Wall clock time and date at job start Fri Apr 10 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47370 * 2 1 4 4 C 1.52997 * 109.47074 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47314 * 181.34802 * 4 3 2 6 6 H 1.08999 * 109.47043 * 305.86857 * 5 4 3 7 7 C 1.52998 * 109.47214 * 185.86547 * 5 4 3 8 8 C 1.52998 * 109.46882 * 65.15126 * 7 5 4 9 9 C 1.52998 * 109.47010 * 65.86399 * 5 4 3 10 10 O 1.45203 * 109.47388 * 185.00369 * 9 5 4 11 11 C 1.34635 * 117.00142 * 180.02562 * 10 9 5 12 12 O 1.21513 * 120.00134 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99787 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99818 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.41380 * 325.00099 * 14 13 11 16 16 C 1.52962 * 109.41072 * 84.85703 * 14 13 11 17 17 C 1.53238 * 109.39683 * 183.77350 * 16 14 13 18 18 C 1.51276 * 108.48241 * 305.26721 * 17 16 14 19 19 C 1.37878 * 120.84649 * 231.41120 * 18 17 16 20 20 N 1.31516 * 119.99852 * 179.97438 * 19 18 17 21 21 Si 1.86794 * 120.00358 * 359.97438 * 19 18 17 22 22 H 1.48499 * 109.47203 * 90.00016 * 21 19 18 23 23 H 1.48505 * 109.47434 * 210.00022 * 21 19 18 24 24 H 1.48500 * 109.47378 * 330.00326 * 21 19 18 25 25 C 1.51259 * 118.30266 * 51.39137 * 18 17 16 26 26 C 1.52961 * 109.41437 * 205.14011 * 14 13 11 27 27 H 1.09007 * 109.47039 * 59.99861 * 1 2 3 28 28 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47017 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.47017 * 239.99708 * 2 1 3 31 31 H 1.08999 * 109.46675 * 120.00147 * 2 1 3 32 32 H 1.09003 * 109.46773 * 59.99952 * 3 2 1 33 33 H 1.08999 * 109.47342 * 299.99739 * 3 2 1 34 34 H 1.08997 * 109.47505 * 61.35083 * 4 3 2 35 35 H 1.08999 * 109.47647 * 301.34820 * 4 3 2 36 36 H 1.09004 * 109.47092 * 185.14465 * 7 5 4 37 37 H 1.09001 * 109.47256 * 305.14837 * 7 5 4 38 38 H 1.09002 * 109.46971 * 173.08074 * 8 7 5 39 39 H 1.09006 * 109.46926 * 293.07773 * 8 7 5 40 40 H 1.08993 * 109.47490 * 53.07978 * 8 7 5 41 41 H 1.09002 * 109.47382 * 64.99912 * 9 5 4 42 42 H 1.09002 * 109.47475 * 305.00271 * 9 5 4 43 43 H 0.96997 * 119.99996 * 359.97438 * 13 11 10 44 44 H 1.08993 * 109.48501 * 303.68502 * 16 14 13 45 45 H 1.09001 * 109.47951 * 63.72918 * 16 14 13 46 46 H 1.09002 * 109.62034 * 185.58993 * 17 16 14 47 47 H 1.08995 * 109.84741 * 65.07787 * 17 16 14 48 48 H 0.96995 * 120.00254 * 180.02562 * 20 19 18 49 49 H 1.09001 * 109.62753 * 188.93785 * 25 18 17 50 50 H 1.09003 * 109.78739 * 68.45601 * 25 18 17 51 51 H 1.08998 * 109.47948 * 296.27749 * 26 14 13 52 52 H 1.09003 * 109.48177 * 56.31451 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0802 2.8844 0.0346 6 1 3.6340 3.4470 -0.7855 7 6 5.6031 2.8903 -0.1121 8 6 5.9841 2.3621 -1.4965 9 6 3.6935 3.5309 1.3663 10 8 4.0726 4.9325 1.3520 11 6 3.8004 5.6506 2.4579 12 8 3.2604 5.1208 3.4088 13 7 4.1268 6.9572 2.5102 14 6 3.8301 7.7388 3.7133 15 1 2.8949 7.3895 4.1507 16 6 4.9624 7.5619 4.7264 17 6 4.6080 8.3028 6.0202 18 6 4.2984 9.7435 5.6784 19 6 4.9152 10.7777 6.3500 20 7 4.6340 12.0242 6.0389 21 14 6.1503 10.4084 7.7018 22 1 7.5109 10.3079 7.1153 23 1 6.1245 11.5005 8.7078 24 1 5.7977 9.1233 8.3571 25 6 3.2953 10.0206 4.5807 26 6 3.6964 9.2160 3.3398 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9495 -0.9009 35 1 3.9331 0.9079 0.8785 36 1 5.9753 3.9083 0.0034 37 1 6.0444 2.2529 0.6541 38 1 7.0570 2.4805 -1.6479 39 1 5.7214 1.3066 -1.5676 40 1 5.4454 2.9228 -2.2603 41 1 4.2105 3.0230 2.1805 42 1 2.6165 3.4474 1.5117 43 1 4.5582 7.3801 1.7513 44 1 5.0962 6.5017 4.9408 45 1 5.8858 7.9691 4.3144 46 1 5.4528 8.2630 6.7078 47 1 3.7364 7.8412 6.4840 48 1 5.0681 12.7517 6.5110 49 1 3.2967 11.0844 4.3434 50 1 2.2996 9.7193 4.9061 51 1 4.6504 9.5831 2.9613 52 1 2.9323 9.3288 2.5707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193972737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:58 Heat of formation + Delta-G solvation = -139.893575 kcal Electronic energy + Delta-G solvation = -26357.090130 eV Core-core repulsion = 22740.395874 eV Total energy + Delta-G solvation = -3616.694256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24715 -38.27767 -37.15599 -35.70151 -34.57094 -33.77478 -31.59552 -30.84801 -29.69787 -28.50164 -27.15165 -24.71314 -23.33078 -22.53503 -21.55200 -21.32902 -20.71161 -20.18952 -19.63898 -18.21343 -16.77671 -16.30332 -16.03791 -15.69638 -15.10573 -14.87563 -14.44984 -14.40189 -14.27396 -13.66676 -13.42419 -13.28301 -13.14707 -12.83965 -12.76376 -12.52513 -12.31543 -12.10772 -12.00718 -11.82444 -11.69573 -11.61348 -11.35031 -11.07093 -11.03338 -10.94860 -10.83094 -10.73213 -10.68950 -10.56391 -10.34593 -10.24008 -10.05727 -9.98592 -9.64518 -9.05996 -8.90956 -8.48335 -8.37502 -6.12061 -4.02761 2.46216 3.18443 3.27030 3.35932 3.38665 4.29905 4.35853 4.37953 4.49549 4.63901 4.80742 4.84448 4.89483 5.05748 5.16270 5.19105 5.22908 5.31510 5.34240 5.38353 5.45383 5.48680 5.58825 5.66305 5.68358 5.71809 5.73999 5.83899 5.85555 5.89348 5.96745 6.04636 6.09179 6.14445 6.16106 6.39081 6.45883 6.54240 6.69067 6.78780 6.87293 6.93737 7.07739 7.20302 7.42719 7.62940 7.69502 7.74577 7.89511 8.35961 8.71189 8.94290 9.53061 10.97410 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.002406 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.603611 B =11632.868631 C =12070.988384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.087 4.087 6 H 0.082 0.918 7 C -0.121 4.121 8 C -0.152 4.152 9 C 0.090 3.910 10 O -0.376 6.376 11 C 0.641 3.359 12 O -0.577 6.577 13 N -0.702 5.702 14 C 0.170 3.830 15 H 0.081 0.919 16 C -0.116 4.116 17 C -0.013 4.013 18 C -0.490 4.490 19 C 0.076 3.924 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.266 1.266 25 C 0.013 3.987 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.400 0.600 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.032 0.968 47 H 0.020 0.980 48 H 0.264 0.736 49 H 0.062 0.938 50 H 0.007 0.993 51 H 0.057 0.943 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -19.982 -15.320 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.165 4.165 4 C -0.151 4.151 5 C -0.105 4.105 6 H 0.100 0.900 7 C -0.158 4.158 8 C -0.209 4.209 9 C 0.015 3.985 10 O -0.290 6.290 11 C 0.394 3.606 12 O -0.466 6.466 13 N -0.359 5.359 14 C 0.069 3.931 15 H 0.099 0.901 16 C -0.155 4.155 17 C -0.051 4.051 18 C -0.509 4.509 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.024 4.024 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.026 0.974 51 H 0.075 0.925 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.512 -20.112 -14.825 25.031 hybrid contribution 0.912 0.010 0.439 1.013 sum -0.600 -20.102 -14.386 24.727 Atomic orbital electron populations 1.21789 0.95918 1.01507 1.01970 1.21523 0.95899 0.96854 1.01889 1.21756 0.95292 0.96951 1.02544 1.21643 0.95500 0.95104 1.02813 1.21285 0.96742 0.95944 0.96558 0.90008 1.21566 0.94547 1.02244 0.97492 1.21811 1.01174 1.00923 0.96987 1.23027 1.00528 0.76738 0.98203 1.86197 1.78295 1.24523 1.40015 1.18261 0.78256 0.83048 0.81065 1.90976 1.47589 1.70796 1.37209 1.45328 1.63648 1.06310 1.20661 1.21132 0.99193 0.90598 0.82223 0.90115 1.21962 0.97409 0.98313 0.97806 1.19721 0.96909 0.95859 0.92641 1.20041 1.23490 0.89199 1.18136 1.24840 0.96436 0.94699 0.96672 1.69829 1.42914 0.98518 1.41441 0.86653 0.81669 0.77854 0.82167 1.20430 1.21631 1.19147 1.19342 0.94827 0.97447 0.90828 1.21971 1.00315 0.92691 1.00293 0.92786 0.92888 0.92601 0.92167 0.92032 0.91561 0.91792 0.90777 0.91581 0.91017 0.91982 0.92801 0.92732 0.92686 0.91456 0.91141 0.76636 0.94397 0.92831 0.95000 0.96120 0.92563 0.91918 0.97446 0.92465 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.13 -0.94 5.02 -26.73 -0.13 -1.08 16 4 C -0.11 -0.81 4.56 -26.73 -0.12 -0.93 16 5 C -0.09 -0.77 2.09 -90.62 -0.19 -0.95 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.12 -1.05 5.35 -26.73 -0.14 -1.19 16 8 C -0.15 -1.08 9.50 37.16 0.35 -0.72 16 9 C 0.09 1.07 4.73 37.16 0.18 1.25 16 10 O -0.38 -5.47 9.73 -40.31 -0.39 -5.86 16 11 C 0.64 11.31 8.71 54.06 0.47 11.78 16 12 O -0.58 -11.99 15.79 -19.28 -0.30 -12.29 16 13 N -0.70 -11.86 5.08 -58.77 -0.30 -12.16 16 14 C 0.17 3.36 2.35 -67.97 -0.16 3.20 16 15 H 0.08 1.75 7.57 -51.93 -0.39 1.36 16 16 C -0.12 -2.45 5.50 -26.63 -0.15 -2.60 16 17 C -0.01 -0.31 5.60 -27.48 -0.15 -0.47 16 18 C -0.49 -12.76 5.51 -98.92 -0.55 -13.31 16 19 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 20 N -0.89 -25.21 12.73 55.43 0.71 -24.50 16 21 Si 0.89 21.10 27.27 -169.99 -4.64 16.47 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.20 6.46 56.52 0.37 -5.84 16 25 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 26 C -0.11 -2.31 5.40 -26.63 -0.14 -2.45 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.46 6.47 -51.93 -0.34 0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.34 6.79 -51.93 -0.35 -0.01 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.86 6.35 -51.93 -0.33 0.53 16 43 H 0.40 5.70 8.71 -40.82 -0.36 5.35 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.06 1.65 7.07 -51.93 -0.37 1.29 16 50 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 51 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -29.28 399.59 -9.59 -38.87 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -9.90 Total: 0.45 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.79 Total: -6.99 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.41 Total: -36.66 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.70 Total: -18.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.64 Total: 16.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.28 -9.59 -38.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.023 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds