Wall clock time and date at job start Fri Apr 10 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47370 * 2 1 4 4 C 1.52997 * 109.47074 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47314 * 181.34802 * 4 3 2 6 6 H 1.08999 * 109.47043 * 305.86857 * 5 4 3 7 7 C 1.52998 * 109.47214 * 185.86547 * 5 4 3 8 8 C 1.52998 * 109.46882 * 65.15126 * 7 5 4 9 9 C 1.52998 * 109.47010 * 65.86399 * 5 4 3 10 10 O 1.45203 * 109.47388 * 185.00369 * 9 5 4 11 11 C 1.34635 * 117.00142 * 180.02562 * 10 9 5 12 12 O 1.21513 * 120.00134 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99787 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99818 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.41380 * 325.00099 * 14 13 11 16 16 C 1.52962 * 109.41072 * 84.85703 * 14 13 11 17 17 C 1.53238 * 109.39683 * 183.77350 * 16 14 13 18 18 C 1.51276 * 108.48241 * 305.26721 * 17 16 14 19 19 C 1.37878 * 120.84649 * 231.41120 * 18 17 16 20 20 N 1.31516 * 119.99852 * 179.97438 * 19 18 17 21 21 Si 1.86794 * 120.00358 * 359.97438 * 19 18 17 22 22 H 1.48499 * 109.47203 * 90.00016 * 21 19 18 23 23 H 1.48505 * 109.47434 * 210.00022 * 21 19 18 24 24 H 1.48500 * 109.47378 * 330.00326 * 21 19 18 25 25 C 1.51259 * 118.30266 * 51.39137 * 18 17 16 26 26 C 1.52961 * 109.41437 * 205.14011 * 14 13 11 27 27 H 1.09007 * 109.47039 * 59.99861 * 1 2 3 28 28 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47017 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.47017 * 239.99708 * 2 1 3 31 31 H 1.08999 * 109.46675 * 120.00147 * 2 1 3 32 32 H 1.09003 * 109.46773 * 59.99952 * 3 2 1 33 33 H 1.08999 * 109.47342 * 299.99739 * 3 2 1 34 34 H 1.08997 * 109.47505 * 61.35083 * 4 3 2 35 35 H 1.08999 * 109.47647 * 301.34820 * 4 3 2 36 36 H 1.09004 * 109.47092 * 185.14465 * 7 5 4 37 37 H 1.09001 * 109.47256 * 305.14837 * 7 5 4 38 38 H 1.09002 * 109.46971 * 173.08074 * 8 7 5 39 39 H 1.09006 * 109.46926 * 293.07773 * 8 7 5 40 40 H 1.08993 * 109.47490 * 53.07978 * 8 7 5 41 41 H 1.09002 * 109.47382 * 64.99912 * 9 5 4 42 42 H 1.09002 * 109.47475 * 305.00271 * 9 5 4 43 43 H 0.96997 * 119.99996 * 359.97438 * 13 11 10 44 44 H 1.08993 * 109.48501 * 303.68502 * 16 14 13 45 45 H 1.09001 * 109.47951 * 63.72918 * 16 14 13 46 46 H 1.09002 * 109.62034 * 185.58993 * 17 16 14 47 47 H 1.08995 * 109.84741 * 65.07787 * 17 16 14 48 48 H 0.96995 * 120.00254 * 180.02562 * 20 19 18 49 49 H 1.09001 * 109.62753 * 188.93785 * 25 18 17 50 50 H 1.09003 * 109.78739 * 68.45601 * 25 18 17 51 51 H 1.08998 * 109.47948 * 296.27749 * 26 14 13 52 52 H 1.09003 * 109.48177 * 56.31451 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0802 2.8844 0.0346 6 1 3.6340 3.4470 -0.7855 7 6 5.6031 2.8903 -0.1121 8 6 5.9841 2.3621 -1.4965 9 6 3.6935 3.5309 1.3663 10 8 4.0726 4.9325 1.3520 11 6 3.8004 5.6506 2.4579 12 8 3.2604 5.1208 3.4088 13 7 4.1268 6.9572 2.5102 14 6 3.8301 7.7388 3.7133 15 1 2.8949 7.3895 4.1507 16 6 4.9624 7.5619 4.7264 17 6 4.6080 8.3028 6.0202 18 6 4.2984 9.7435 5.6784 19 6 4.9152 10.7777 6.3500 20 7 4.6340 12.0242 6.0389 21 14 6.1503 10.4084 7.7018 22 1 7.5109 10.3079 7.1153 23 1 6.1245 11.5005 8.7078 24 1 5.7977 9.1233 8.3571 25 6 3.2953 10.0206 4.5807 26 6 3.6964 9.2160 3.3398 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9495 -0.9009 35 1 3.9331 0.9079 0.8785 36 1 5.9753 3.9083 0.0034 37 1 6.0444 2.2529 0.6541 38 1 7.0570 2.4805 -1.6479 39 1 5.7214 1.3066 -1.5676 40 1 5.4454 2.9228 -2.2603 41 1 4.2105 3.0230 2.1805 42 1 2.6165 3.4474 1.5117 43 1 4.5582 7.3801 1.7513 44 1 5.0962 6.5017 4.9408 45 1 5.8858 7.9691 4.3144 46 1 5.4528 8.2630 6.7078 47 1 3.7364 7.8412 6.4840 48 1 5.0681 12.7517 6.5110 49 1 3.2967 11.0844 4.3434 50 1 2.2996 9.7193 4.9061 51 1 4.6504 9.5831 2.9613 52 1 2.9323 9.3288 2.5707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193972737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:57 Heat of formation + Delta-G solvation = -154.878961 kcal Electronic energy + Delta-G solvation = -26357.739945 eV Core-core repulsion = 22740.395874 eV Total energy + Delta-G solvation = -3617.344071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59286 -39.43647 -38.42993 -36.97588 -35.49759 -35.20958 -33.43354 -31.54571 -31.45750 -29.56733 -28.66822 -25.55689 -24.23877 -23.92193 -23.35673 -22.22368 -21.88065 -21.34901 -20.92540 -19.64644 -18.02589 -17.94940 -17.50215 -16.59002 -16.39803 -16.13634 -15.77254 -15.37568 -15.23665 -14.96509 -14.60003 -14.43194 -14.15331 -14.04977 -13.97250 -13.85851 -13.78765 -13.51754 -13.20080 -12.81939 -12.78596 -12.67718 -12.55608 -12.39471 -12.24406 -12.00920 -11.96066 -11.87500 -11.73711 -11.70225 -11.59381 -11.47367 -11.45520 -11.17430 -11.08436 -10.92731 -10.72252 -10.54055 -10.02330 -8.17291 -6.11360 1.16962 1.38791 1.42810 1.50925 1.76901 2.41277 3.07780 3.24462 3.65876 3.73150 3.94177 3.99889 4.13318 4.15645 4.17601 4.29365 4.37035 4.44943 4.45619 4.52005 4.59672 4.69631 4.70161 4.77760 4.79210 4.83034 4.87653 4.94646 5.01821 5.04472 5.05393 5.10142 5.12132 5.16032 5.20352 5.21325 5.24655 5.32869 5.33176 5.43122 5.45558 5.51873 5.52792 5.54450 5.57038 5.65271 5.75512 5.81967 6.34142 6.48145 6.94037 7.34865 7.46884 8.93169 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.002406 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.603611 B =11632.868631 C =12070.988384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.077 4.077 6 H 0.084 0.916 7 C -0.121 4.121 8 C -0.148 4.148 9 C 0.084 3.916 10 O -0.367 6.367 11 C 0.644 3.356 12 O -0.610 6.610 13 N -0.692 5.692 14 C 0.183 3.817 15 H 0.062 0.938 16 C -0.109 4.109 17 C -0.015 4.015 18 C -0.500 4.500 19 C 0.026 3.974 20 N -0.926 5.926 21 Si 0.938 3.062 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.259 1.259 25 C 0.009 3.991 26 C -0.101 4.101 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.416 0.584 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.015 0.985 48 H 0.264 0.736 49 H 0.037 0.963 50 H 0.000 1.000 51 H 0.061 0.939 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -21.943 -16.869 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.165 4.165 4 C -0.144 4.144 5 C -0.096 4.096 6 H 0.103 0.897 7 C -0.158 4.158 8 C -0.205 4.205 9 C 0.010 3.990 10 O -0.280 6.280 11 C 0.397 3.603 12 O -0.502 6.502 13 N -0.350 5.350 14 C 0.080 3.920 15 H 0.080 0.920 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.519 4.519 19 C -0.172 4.172 20 N -0.566 5.566 21 Si 0.764 3.236 22 H -0.197 1.197 23 H -0.218 1.218 24 H -0.184 1.184 25 C -0.029 4.029 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.252 0.748 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.018 0.982 51 H 0.079 0.921 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.662 -22.093 -16.414 27.531 hybrid contribution 0.578 0.569 0.885 1.200 sum -0.084 -21.524 -15.528 26.541 Atomic orbital electron populations 1.21806 0.96060 1.01873 1.01632 1.21516 0.95795 0.96350 1.02364 1.21742 0.95463 0.97379 1.01917 1.21623 0.95239 0.93854 1.03689 1.21285 0.97056 0.96677 0.94582 0.89726 1.21555 0.94153 1.01427 0.98709 1.21784 1.01387 1.01614 0.95756 1.23341 1.00400 0.75288 1.00020 1.86226 1.77819 1.25717 1.38264 1.18314 0.77632 0.83132 0.81249 1.90960 1.49036 1.71530 1.38653 1.44961 1.63582 1.06166 1.20295 1.20736 0.97868 0.90498 0.82921 0.91963 1.21842 0.98034 0.98016 0.96889 1.19723 0.96743 0.94804 0.94055 1.20567 1.23053 0.90274 1.18026 1.25545 0.98361 0.94641 0.98698 1.69944 1.44431 0.99307 1.42894 0.85845 0.79995 0.77765 0.79946 1.19665 1.21794 1.18389 1.19303 0.94375 0.96654 0.92592 1.21734 1.01165 0.92203 0.98799 0.92574 0.92198 0.93512 0.91051 0.92157 0.93123 0.91508 0.89028 0.91536 0.92632 0.91955 0.92571 0.91487 0.92453 0.92050 0.91477 0.74780 0.94112 0.92243 0.94822 0.96701 0.92696 0.94456 0.98181 0.92076 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.43 5.93 30.59 0.18 -1.25 16 3 C -0.13 -1.69 5.02 30.59 0.15 -1.53 16 4 C -0.11 -1.30 4.56 30.59 0.14 -1.16 16 5 C -0.08 -1.23 2.09 -10.79 -0.02 -1.25 16 6 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.12 -1.87 5.35 30.59 0.16 -1.71 16 8 C -0.15 -1.73 9.50 71.98 0.68 -1.04 16 9 C 0.08 1.92 4.73 71.98 0.34 2.26 16 10 O -0.37 -10.17 9.73 -55.44 -0.54 -10.71 16 11 C 0.64 21.89 8.71 129.79 1.13 23.02 16 12 O -0.61 -25.01 15.79 19.80 0.31 -24.69 16 13 N -0.69 -22.11 5.08 -570.25 -2.90 -25.00 16 14 C 0.18 7.00 2.35 44.97 0.11 7.10 16 15 H 0.06 2.66 7.57 -2.39 -0.02 2.64 16 16 C -0.11 -4.46 5.50 30.66 0.17 -4.29 16 17 C -0.02 -0.71 5.60 30.11 0.17 -0.54 16 18 C -0.50 -26.06 5.51 -16.17 -0.09 -26.15 16 19 C 0.03 1.43 5.46 84.65 0.46 1.89 16 20 N -0.93 -53.34 12.73 21.45 0.27 -53.07 16 21 Si 0.94 43.11 27.27 68.60 1.87 44.98 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.26 -11.49 6.46 99.48 0.64 -10.85 16 25 C 0.01 0.43 5.97 30.10 0.18 0.61 16 26 C -0.10 -3.95 5.40 30.66 0.17 -3.78 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.83 6.43 -2.39 -0.02 0.81 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.85 6.47 -2.39 -0.02 0.83 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.04 7.69 -2.38 -0.02 1.02 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.62 6.79 -2.38 -0.02 0.60 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.59 6.35 -2.39 -0.02 1.58 16 43 H 0.42 10.82 8.71 -92.71 -0.81 10.01 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.03 1.54 4.78 -2.39 -0.01 1.52 16 47 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.04 2.00 7.07 -2.39 -0.02 1.98 16 50 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -62.42 399.59 3.67 -58.75 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.00 Total: 18.75 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.65 Total: -9.00 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -2.62 Total: -78.07 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.23 Total: -35.40 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.87 Total: 44.98 kcal Total: -62.42 3.67 -58.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.129 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds