Wall clock time and date at job start Fri Apr 10 2020 22:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47347 * 185.24167 * 4 3 2 6 6 H 1.09001 * 109.47219 * 54.03762 * 5 4 3 7 7 C 1.53004 * 109.46899 * 294.03729 * 5 4 3 8 8 C 1.52995 * 109.47061 * 173.85284 * 7 5 4 9 9 C 1.53003 * 109.47186 * 174.03809 * 5 4 3 10 10 O 1.45203 * 109.46905 * 186.27773 * 9 5 4 11 11 C 1.34637 * 116.99496 * 180.02562 * 10 9 5 12 12 O 1.21505 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99532 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99584 * 185.33165 * 13 11 10 15 15 C 1.50700 * 110.67535 * 53.12260 * 14 13 11 16 16 H 1.08003 * 119.99749 * 245.89350 * 15 14 13 17 17 C 1.37877 * 120.00014 * 65.88879 * 15 14 13 18 18 N 1.31507 * 120.00156 * 4.27321 * 17 15 14 19 19 Si 1.86796 * 119.99806 * 184.26617 * 17 15 14 20 20 H 1.48508 * 109.47031 * 90.00217 * 19 17 15 21 21 H 1.48500 * 109.47519 * 210.00151 * 19 17 15 22 22 H 1.48500 * 109.47623 * 330.00132 * 19 17 15 23 23 C 1.54894 * 110.75963 * 289.68113 * 14 13 11 24 24 C 1.54269 * 104.19460 * 279.63280 * 23 14 13 25 25 C 1.53880 * 106.59985 * 336.38740 * 24 23 14 26 26 C 1.54269 * 106.59652 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46860 * 299.99821 * 1 2 3 29 29 H 1.08999 * 109.47126 * 59.99936 * 1 2 3 30 30 H 1.09002 * 109.46860 * 240.00179 * 2 1 3 31 31 H 1.08999 * 109.47126 * 120.00064 * 2 1 3 32 32 H 1.08993 * 109.47348 * 60.00336 * 3 2 1 33 33 H 1.08999 * 109.47282 * 299.99968 * 3 2 1 34 34 H 1.09003 * 109.47422 * 65.23340 * 4 3 2 35 35 H 1.09001 * 109.47120 * 305.23691 * 4 3 2 36 36 H 1.09001 * 109.47191 * 293.85646 * 7 5 4 37 37 H 1.08996 * 109.46751 * 53.85371 * 7 5 4 38 38 H 1.09002 * 109.46690 * 68.10144 * 8 7 5 39 39 H 1.08998 * 109.47339 * 188.09971 * 8 7 5 40 40 H 1.09002 * 109.47166 * 308.10318 * 8 7 5 41 41 H 1.09001 * 109.46823 * 66.27872 * 9 5 4 42 42 H 1.08997 * 109.47070 * 306.28153 * 9 5 4 43 43 H 0.96994 * 120.00051 * 5.33119 * 13 11 10 44 44 H 0.96998 * 120.00361 * 185.00376 * 18 17 15 45 45 H 1.08992 * 110.48670 * 160.95393 * 23 14 13 46 46 H 1.08997 * 110.48110 * 38.30294 * 23 14 13 47 47 H 1.09001 * 110.02768 * 217.10454 * 24 23 14 48 48 H 1.09007 * 110.03319 * 95.67126 * 24 23 14 49 49 H 1.08996 * 110.03157 * 119.28606 * 25 24 23 50 50 H 1.09001 * 110.03018 * 240.67087 * 25 24 23 51 51 H 1.08996 * 110.48444 * 142.28847 * 26 25 24 52 52 H 1.09000 * 110.48685 * 264.93172 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8791 0.1311 6 1 3.6325 3.3444 1.0094 7 6 3.6955 3.6734 -1.1187 8 6 4.0688 5.1442 -0.9231 9 6 5.6027 2.8680 0.2799 10 8 6.0721 4.2146 0.5533 11 6 7.3990 4.3789 0.7117 12 8 8.1443 3.4232 0.6244 13 7 7.9005 5.6034 0.9681 14 6 9.3505 5.8039 1.0247 15 6 10.0089 5.2825 -0.2266 16 1 10.6775 4.4360 -0.1724 17 6 9.7577 5.8860 -1.4406 18 7 9.0109 6.9670 -1.4954 19 14 10.4783 5.1681 -3.0073 20 1 9.5286 4.1817 -3.5823 21 1 10.7144 6.2577 -3.9882 22 1 11.7646 4.4941 -2.6972 23 6 9.9489 5.1319 2.2855 24 6 9.6647 6.1370 3.4208 25 6 9.5000 7.5153 2.7567 26 6 9.6892 7.2995 1.2409 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 1.0122 -0.9340 35 1 3.9337 0.8496 0.8385 36 1 4.2294 3.2746 -1.9813 37 1 2.6216 3.5903 -1.2858 38 1 5.1541 5.2435 -0.8998 39 1 3.6677 5.7336 -1.7476 40 1 3.6508 5.5032 0.0174 41 1 6.0553 2.5058 -0.6432 42 1 5.8825 2.2114 1.1037 43 1 7.3013 6.3518 1.1152 44 1 8.7740 7.3499 -2.3546 45 1 11.0222 4.9846 2.1662 46 1 9.4521 4.1822 2.4836 47 1 10.5009 6.1568 4.1197 48 1 8.7479 5.8618 3.9423 49 1 8.5033 7.9090 2.9559 50 1 10.2557 8.2042 3.1340 51 1 9.0033 7.9318 0.6771 52 1 10.7206 7.5020 0.9525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193982042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:01 Heat of formation + Delta-G solvation = -128.684079 kcal Electronic energy + Delta-G solvation = -27614.131846 eV Core-core repulsion = 23997.923670 eV Total energy + Delta-G solvation = -3616.208176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.48627 -37.99890 -36.99537 -35.13627 -33.92828 -32.72158 -31.79832 -30.54669 -28.27224 -27.66874 -27.32106 -24.38070 -23.93450 -22.75198 -21.36738 -20.67553 -19.93842 -19.45491 -18.71333 -17.40230 -16.63293 -16.07588 -15.57712 -15.36664 -14.65317 -14.61470 -14.31637 -14.00511 -13.93756 -13.66323 -13.61930 -13.06903 -12.84609 -12.61014 -12.28832 -12.18411 -11.90734 -11.74902 -11.66036 -11.28379 -11.26387 -11.11017 -10.93185 -10.84608 -10.74819 -10.61389 -10.57615 -10.49346 -10.38289 -10.29120 -10.17937 -10.00188 -9.62711 -9.54159 -9.47586 -9.14085 -9.07624 -8.39970 -7.55311 -6.03465 -4.07360 3.23711 3.36387 3.40079 3.44542 4.21851 4.45382 4.60365 4.71783 4.83555 4.93000 5.07860 5.12213 5.27959 5.30560 5.51114 5.55345 5.59079 5.63656 5.67346 5.71922 5.73168 5.74641 5.78427 5.79635 5.86190 5.87967 5.96217 6.02333 6.06192 6.15002 6.28475 6.31193 6.36265 6.39704 6.45753 6.53857 6.65204 6.69924 6.84341 6.86566 6.87604 7.07154 7.14780 7.32495 7.33396 7.65290 7.91825 8.13232 8.28060 8.90498 9.00890 9.58416 9.78101 11.00766 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003573 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.769826 B = 7833.653195 C = 8705.181947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.087 4.087 6 H 0.078 0.922 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.095 3.905 10 O -0.379 6.379 11 C 0.640 3.360 12 O -0.573 6.573 13 N -0.669 5.669 14 C 0.309 3.691 15 C -0.493 4.493 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.273 1.273 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.097 4.097 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.380 0.620 44 H 0.259 0.741 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.048 0.952 50 H 0.047 0.953 51 H 0.081 0.919 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 -5.502 4.407 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.106 4.106 6 H 0.097 0.903 7 C -0.152 4.152 8 C -0.210 4.210 9 C 0.020 3.980 10 O -0.295 6.295 11 C 0.392 3.608 12 O -0.462 6.462 13 N -0.324 5.324 14 C 0.228 3.772 15 C -0.532 4.532 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.516 5.516 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.170 4.170 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.212 0.788 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.099 0.901 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.650 -5.835 4.228 14.559 hybrid contribution 0.009 -0.170 -0.963 0.978 sum -12.641 -6.005 3.265 14.371 Atomic orbital electron populations 1.21778 0.96085 1.01382 1.01765 1.21549 0.95659 0.97161 1.01996 1.21640 0.95133 0.96503 1.02290 1.21555 0.95482 0.95651 1.02416 1.21306 0.93704 0.95932 0.99628 0.90338 1.21575 1.00332 0.96385 0.96922 1.21884 1.04112 0.94749 1.00251 1.22704 0.92947 0.81439 1.00959 1.86325 1.25357 1.32491 1.85320 1.18317 0.79764 0.85471 0.77261 1.90871 1.58488 1.39980 1.56885 1.45638 1.08835 1.05858 1.72112 1.18790 0.74846 0.91528 0.92063 1.21155 1.26559 1.14073 0.91385 0.92098 1.24943 0.95099 0.93993 0.99004 1.69930 1.37236 1.19424 1.25059 0.86628 0.79745 0.78653 0.83219 1.20849 1.21433 1.19792 1.22718 1.00570 0.97822 0.95372 1.22143 0.99590 0.96189 0.98062 1.22325 0.99770 0.96304 0.98602 1.22415 1.02088 0.97755 0.91337 0.92980 0.92804 0.92814 0.92084 0.92089 0.91952 0.91674 0.91647 0.91708 0.92327 0.92323 0.90115 0.93986 0.93186 0.91979 0.92290 0.78795 0.93090 0.91886 0.92298 0.93448 0.93400 0.93303 0.93366 0.90051 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.06 4.87 -26.73 -0.13 -1.19 16 4 C -0.11 -1.19 4.67 -26.73 -0.12 -1.31 16 5 C -0.09 -1.12 2.20 -90.62 -0.20 -1.32 16 6 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 7 C -0.11 -1.50 5.29 -26.73 -0.14 -1.64 16 8 C -0.15 -2.28 9.01 37.16 0.33 -1.95 16 9 C 0.10 1.59 4.81 37.16 0.18 1.77 16 10 O -0.38 -7.49 7.07 -40.32 -0.28 -7.78 16 11 C 0.64 14.96 8.12 54.06 0.44 15.40 16 12 O -0.57 -15.06 13.99 -19.28 -0.27 -15.33 16 13 N -0.67 -15.18 4.94 -51.69 -0.26 -15.43 16 14 C 0.31 7.28 0.28 -130.99 -0.04 7.24 16 15 C -0.49 -13.37 6.59 -34.44 -0.23 -13.60 16 16 H 0.06 1.75 7.79 -52.48 -0.41 1.34 16 17 C 0.07 1.97 5.31 -17.82 -0.09 1.88 16 18 N -0.88 -23.48 11.44 55.43 0.63 -22.85 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.13 -2.72 5.71 -25.07 -0.14 -2.87 16 24 C -0.12 -2.20 6.78 -25.61 -0.17 -2.37 16 25 C -0.13 -2.36 6.78 -25.61 -0.17 -2.54 16 26 C -0.10 -2.11 4.86 -25.08 -0.12 -2.23 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 6.72 -51.93 -0.35 0.24 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.65 6.45 -51.93 -0.33 0.32 16 38 H 0.08 1.49 5.86 -51.93 -0.30 1.18 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 41 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 42 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 43 H 0.38 8.01 8.64 -40.82 -0.35 7.66 16 44 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 45 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 46 H 0.06 1.35 6.89 -51.93 -0.36 0.99 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.87 7.11 -51.93 -0.37 1.50 16 52 H 0.06 1.48 8.04 -51.93 -0.42 1.06 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -28.67 399.78 -9.63 -38.30 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -10.05 Total: 6.96 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.40 Total: -6.64 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.38 Total: -38.28 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.55 Total: -23.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.67 -9.63 -38.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193982042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.386 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds