Wall clock time and date at job start Fri Apr 10 2020 22:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47347 * 185.24167 * 4 3 2 6 6 H 1.09001 * 109.47219 * 54.03762 * 5 4 3 7 7 C 1.53004 * 109.46899 * 294.03729 * 5 4 3 8 8 C 1.52995 * 109.47061 * 173.85284 * 7 5 4 9 9 C 1.53003 * 109.47186 * 174.03809 * 5 4 3 10 10 O 1.45203 * 109.46905 * 186.27773 * 9 5 4 11 11 C 1.34637 * 116.99496 * 180.02562 * 10 9 5 12 12 O 1.21505 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99532 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99584 * 185.33165 * 13 11 10 15 15 C 1.50700 * 110.67535 * 53.12260 * 14 13 11 16 16 H 1.08003 * 119.99749 * 245.89350 * 15 14 13 17 17 C 1.37877 * 120.00014 * 65.88879 * 15 14 13 18 18 N 1.31507 * 120.00156 * 4.27321 * 17 15 14 19 19 Si 1.86796 * 119.99806 * 184.26617 * 17 15 14 20 20 H 1.48508 * 109.47031 * 90.00217 * 19 17 15 21 21 H 1.48500 * 109.47519 * 210.00151 * 19 17 15 22 22 H 1.48500 * 109.47623 * 330.00132 * 19 17 15 23 23 C 1.54894 * 110.75963 * 289.68113 * 14 13 11 24 24 C 1.54269 * 104.19460 * 279.63280 * 23 14 13 25 25 C 1.53880 * 106.59985 * 336.38740 * 24 23 14 26 26 C 1.54269 * 106.59652 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46860 * 299.99821 * 1 2 3 29 29 H 1.08999 * 109.47126 * 59.99936 * 1 2 3 30 30 H 1.09002 * 109.46860 * 240.00179 * 2 1 3 31 31 H 1.08999 * 109.47126 * 120.00064 * 2 1 3 32 32 H 1.08993 * 109.47348 * 60.00336 * 3 2 1 33 33 H 1.08999 * 109.47282 * 299.99968 * 3 2 1 34 34 H 1.09003 * 109.47422 * 65.23340 * 4 3 2 35 35 H 1.09001 * 109.47120 * 305.23691 * 4 3 2 36 36 H 1.09001 * 109.47191 * 293.85646 * 7 5 4 37 37 H 1.08996 * 109.46751 * 53.85371 * 7 5 4 38 38 H 1.09002 * 109.46690 * 68.10144 * 8 7 5 39 39 H 1.08998 * 109.47339 * 188.09971 * 8 7 5 40 40 H 1.09002 * 109.47166 * 308.10318 * 8 7 5 41 41 H 1.09001 * 109.46823 * 66.27872 * 9 5 4 42 42 H 1.08997 * 109.47070 * 306.28153 * 9 5 4 43 43 H 0.96994 * 120.00051 * 5.33119 * 13 11 10 44 44 H 0.96998 * 120.00361 * 185.00376 * 18 17 15 45 45 H 1.08992 * 110.48670 * 160.95393 * 23 14 13 46 46 H 1.08997 * 110.48110 * 38.30294 * 23 14 13 47 47 H 1.09001 * 110.02768 * 217.10454 * 24 23 14 48 48 H 1.09007 * 110.03319 * 95.67126 * 24 23 14 49 49 H 1.08996 * 110.03157 * 119.28606 * 25 24 23 50 50 H 1.09001 * 110.03018 * 240.67087 * 25 24 23 51 51 H 1.08996 * 110.48444 * 142.28847 * 26 25 24 52 52 H 1.09000 * 110.48685 * 264.93172 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8791 0.1311 6 1 3.6325 3.3444 1.0094 7 6 3.6955 3.6734 -1.1187 8 6 4.0688 5.1442 -0.9231 9 6 5.6027 2.8680 0.2799 10 8 6.0721 4.2146 0.5533 11 6 7.3990 4.3789 0.7117 12 8 8.1443 3.4232 0.6244 13 7 7.9005 5.6034 0.9681 14 6 9.3505 5.8039 1.0247 15 6 10.0089 5.2825 -0.2266 16 1 10.6775 4.4360 -0.1724 17 6 9.7577 5.8860 -1.4406 18 7 9.0109 6.9670 -1.4954 19 14 10.4783 5.1681 -3.0073 20 1 9.5286 4.1817 -3.5823 21 1 10.7144 6.2577 -3.9882 22 1 11.7646 4.4941 -2.6972 23 6 9.9489 5.1319 2.2855 24 6 9.6647 6.1370 3.4208 25 6 9.5000 7.5153 2.7567 26 6 9.6892 7.2995 1.2409 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 1.0122 -0.9340 35 1 3.9337 0.8496 0.8385 36 1 4.2294 3.2746 -1.9813 37 1 2.6216 3.5903 -1.2858 38 1 5.1541 5.2435 -0.8998 39 1 3.6677 5.7336 -1.7476 40 1 3.6508 5.5032 0.0174 41 1 6.0553 2.5058 -0.6432 42 1 5.8825 2.2114 1.1037 43 1 7.3013 6.3518 1.1152 44 1 8.7740 7.3499 -2.3546 45 1 11.0222 4.9846 2.1662 46 1 9.4521 4.1822 2.4836 47 1 10.5009 6.1568 4.1197 48 1 8.7479 5.8618 3.9423 49 1 8.5033 7.9090 2.9559 50 1 10.2557 8.2042 3.1340 51 1 9.0033 7.9318 0.6771 52 1 10.7206 7.5020 0.9525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193982042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:00 Heat of formation + Delta-G solvation = -142.865959 kcal Electronic energy + Delta-G solvation = -27614.746819 eV Core-core repulsion = 23997.923670 eV Total energy + Delta-G solvation = -3616.823148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.21837 -39.48736 -38.30238 -36.60214 -34.99370 -34.62919 -33.70645 -31.52864 -29.72045 -29.26911 -28.82717 -26.00841 -25.33245 -23.74053 -22.65456 -21.80763 -21.10318 -21.04274 -20.49192 -19.12609 -18.57330 -17.55436 -17.03011 -16.63309 -16.36670 -16.24902 -15.78288 -15.40940 -15.00222 -14.96032 -14.74065 -14.45820 -14.12278 -13.78444 -13.68555 -13.52060 -13.34841 -13.16433 -12.96561 -12.85222 -12.83559 -12.47823 -12.34082 -12.16151 -12.02472 -11.98121 -11.93263 -11.72767 -11.65031 -11.49978 -11.44130 -11.39689 -11.30819 -11.10677 -11.05264 -11.03964 -10.85459 -10.43373 -9.44108 -8.10278 -6.18772 1.31822 1.36353 1.44679 1.65219 2.35547 2.42711 3.13983 3.59704 3.75483 3.86497 4.03449 4.13837 4.15197 4.15370 4.26284 4.27254 4.33522 4.43311 4.48893 4.56848 4.58581 4.73933 4.80546 4.82760 4.90377 4.96450 4.96911 5.00954 5.05029 5.08953 5.12954 5.16942 5.18086 5.18936 5.24134 5.29143 5.33338 5.38294 5.39518 5.41847 5.50154 5.53694 5.57160 5.67608 5.70478 5.72670 5.94515 6.24375 6.36008 6.80926 7.11764 7.48285 7.96069 8.90706 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003573 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.769826 B = 7833.653195 C = 8705.181947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.109 4.109 5 C -0.076 4.076 6 H 0.087 0.913 7 C -0.112 4.112 8 C -0.150 4.150 9 C 0.089 3.911 10 O -0.370 6.370 11 C 0.636 3.364 12 O -0.609 6.609 13 N -0.664 5.664 14 C 0.299 3.701 15 C -0.512 4.512 16 H 0.032 0.968 17 C 0.040 3.960 18 N -0.885 5.885 19 Si 0.929 3.071 20 H -0.293 1.293 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.125 4.125 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.090 4.090 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.389 0.611 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 -5.091 5.378 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.094 4.094 6 H 0.105 0.895 7 C -0.150 4.150 8 C -0.207 4.207 9 C 0.014 3.986 10 O -0.285 6.285 11 C 0.389 3.611 12 O -0.501 6.501 13 N -0.319 5.319 14 C 0.217 3.783 15 C -0.551 4.551 16 H 0.050 0.950 17 C -0.162 4.162 18 N -0.523 5.523 19 Si 0.757 3.243 20 H -0.220 1.220 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.163 4.163 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.128 4.128 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.222 0.778 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.433 -5.404 5.199 16.266 hybrid contribution 0.539 -0.361 -1.293 1.447 sum -13.894 -5.766 3.907 15.542 Atomic orbital electron populations 1.21772 0.95332 1.01874 1.01977 1.21542 0.96311 0.96488 1.02027 1.21603 0.93507 0.97274 1.02674 1.21538 0.96785 0.93784 1.02515 1.21305 0.90412 0.97740 0.99948 0.89456 1.21579 1.01927 0.94948 0.96503 1.21830 1.01388 0.96394 1.01102 1.23040 0.95554 0.79987 0.99997 1.86362 1.23073 1.34276 1.84804 1.18473 0.80671 0.85198 0.76805 1.90841 1.59753 1.41082 1.58402 1.45384 1.08775 1.05979 1.71722 1.18858 0.74981 0.92979 0.91495 1.21280 1.26927 1.13378 0.93498 0.94959 1.25381 0.95676 0.94492 1.00669 1.69976 1.37543 1.19541 1.25269 0.86011 0.78832 0.78189 0.81285 1.21963 1.20021 1.19954 1.22632 0.99598 0.97894 0.96220 1.22076 1.01132 0.94786 0.96968 1.22242 1.01664 0.96762 0.95240 1.22230 1.00516 0.95817 0.94286 0.92417 0.92550 0.92645 0.92181 0.92020 0.91462 0.91341 0.91857 0.91361 0.93358 0.89477 0.94006 0.93156 0.92380 0.93909 0.92202 0.77792 0.93114 0.92729 0.94315 0.90988 0.92327 0.91577 0.90975 0.91617 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.13 -1.78 5.93 30.59 0.18 -1.59 16 3 C -0.11 -1.75 4.87 30.59 0.15 -1.61 16 4 C -0.11 -2.10 4.67 30.60 0.14 -1.96 16 5 C -0.08 -1.84 2.20 -10.79 -0.02 -1.87 16 6 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 7 C -0.11 -2.77 5.29 30.59 0.16 -2.61 16 8 C -0.15 -4.35 9.01 71.98 0.65 -3.70 16 9 C 0.09 3.01 4.81 71.98 0.35 3.36 16 10 O -0.37 -14.84 7.07 -55.46 -0.39 -15.23 16 11 C 0.64 30.42 8.12 129.79 1.05 31.48 16 12 O -0.61 -33.18 13.99 19.83 0.28 -32.90 16 13 N -0.66 -30.42 4.94 -547.86 -2.71 -33.12 16 14 C 0.30 14.26 0.28 4.14 0.00 14.26 16 15 C -0.51 -28.64 6.59 25.60 0.17 -28.47 16 16 H 0.03 1.94 7.79 -2.91 -0.02 1.92 16 17 C 0.04 2.20 5.31 84.66 0.45 2.65 16 18 N -0.89 -47.83 11.44 21.45 0.25 -47.58 16 19 Si 0.93 45.43 29.54 68.60 2.03 47.46 16 20 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 23 C -0.12 -5.40 5.71 31.67 0.18 -5.22 16 24 C -0.11 -3.77 6.78 31.32 0.21 -3.56 16 25 C -0.12 -4.02 6.78 31.32 0.21 -3.80 16 26 C -0.09 -3.85 4.86 31.66 0.15 -3.70 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.03 6.72 -2.39 -0.02 1.01 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.69 6.45 -2.39 -0.02 1.68 16 38 H 0.04 1.55 5.86 -2.39 -0.01 1.53 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 41 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 42 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 43 H 0.39 16.35 8.64 -92.71 -0.80 15.55 16 44 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 45 H 0.05 2.40 8.05 -2.39 -0.02 2.38 16 46 H 0.04 1.80 6.89 -2.39 -0.02 1.79 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.07 3.00 7.11 -2.39 -0.02 2.99 16 52 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 Total: -1.00 -63.29 399.78 4.26 -59.03 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.06 Total: 29.85 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.75 Total: -7.50 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.46 Total: -80.71 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.11 Total: -48.13 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -63.29 4.26 -59.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193982042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.841 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds