Wall clock time and date at job start Fri Apr 10 2020 22:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 C 1.53000 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47618 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47008 * 305.00099 * 5 4 3 7 7 C 1.52999 * 109.46766 * 65.00167 * 5 4 3 8 8 C 1.53000 * 109.46892 * 184.21686 * 7 5 4 9 9 C 1.53003 * 109.47204 * 184.99816 * 5 4 3 10 10 O 1.45199 * 109.46831 * 172.32470 * 9 5 4 11 11 C 1.34635 * 117.00197 * 180.02562 * 10 9 5 12 12 O 1.21511 * 119.99495 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00465 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00144 * 185.01493 * 13 11 10 15 15 C 1.50696 * 110.67405 * 57.05138 * 14 13 11 16 16 H 1.08008 * 120.00113 * 237.98003 * 15 14 13 17 17 C 1.37873 * 120.00180 * 57.98049 * 15 14 13 18 18 N 1.31514 * 119.99627 * 1.73359 * 17 15 14 19 19 Si 1.86804 * 120.00131 * 181.72789 * 17 15 14 20 20 H 1.48497 * 109.47182 * 60.00287 * 19 17 15 21 21 H 1.48504 * 109.46907 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47374 * 299.99884 * 19 17 15 23 23 C 1.54898 * 110.75421 * 293.61408 * 14 13 11 24 24 C 1.54256 * 104.19667 * 279.63084 * 23 14 13 25 25 C 1.53877 * 106.59787 * 336.38622 * 24 23 14 26 26 C 1.54260 * 106.59957 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47014 * 299.99790 * 1 2 3 28 28 H 1.09001 * 109.47463 * 59.99522 * 1 2 3 29 29 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47014 * 240.00210 * 2 1 3 31 31 H 1.09001 * 109.47463 * 120.00478 * 2 1 3 32 32 H 1.08999 * 109.47364 * 60.00657 * 3 2 1 33 33 H 1.08998 * 109.47739 * 300.00170 * 3 2 1 34 34 H 1.09000 * 109.47126 * 59.99986 * 4 3 2 35 35 H 1.09001 * 109.47099 * 300.00410 * 4 3 2 36 36 H 1.09007 * 109.47259 * 304.20988 * 7 5 4 37 37 H 1.09000 * 109.47342 * 64.21716 * 7 5 4 38 38 H 1.09001 * 109.47265 * 291.12364 * 8 7 5 39 39 H 1.09002 * 109.47118 * 51.12440 * 8 7 5 40 40 H 1.09007 * 109.47172 * 171.12231 * 8 7 5 41 41 H 1.09005 * 109.46585 * 52.33129 * 9 5 4 42 42 H 1.08990 * 109.47019 * 292.32412 * 9 5 4 43 43 H 0.96994 * 119.99869 * 5.00505 * 13 11 10 44 44 H 0.97006 * 119.99770 * 185.01412 * 18 17 15 45 45 H 1.08994 * 110.48550 * 160.94585 * 23 14 13 46 46 H 1.08998 * 110.48350 * 38.30927 * 23 14 13 47 47 H 1.09006 * 110.03216 * 217.10547 * 24 23 14 48 48 H 1.08992 * 110.03655 * 95.67140 * 24 23 14 49 49 H 1.09002 * 110.03362 * 119.28723 * 25 24 23 50 50 H 1.08995 * 110.03417 * 240.66550 * 25 24 23 51 51 H 1.09003 * 110.48905 * 142.28608 * 26 25 24 52 52 H 1.09003 * 110.48783 * 264.92701 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6758 3.5682 1.3080 8 6 4.0935 5.0394 1.2651 9 6 5.6048 2.8868 -0.1263 10 8 6.0737 4.2490 -0.3082 11 6 7.4021 4.4261 -0.4372 12 8 8.1492 3.4686 -0.3984 13 7 7.9033 5.6654 -0.6084 14 6 9.3351 5.8484 -0.8585 15 6 9.7657 5.0731 -2.0769 16 1 10.5447 4.3293 -1.9962 17 6 9.1653 5.3132 -3.2946 18 7 8.2408 6.2426 -3.3999 19 14 9.6652 4.3186 -4.7947 20 1 9.4035 2.8786 -4.5436 21 1 8.8777 4.7675 -5.9711 22 1 11.1119 4.5196 -5.0624 23 6 10.1662 5.4357 0.3818 24 6 10.0725 6.6545 1.3226 25 6 9.7619 7.8723 0.4347 26 6 9.6769 7.3508 -1.0146 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 2.5952 3.5008 1.4343 37 1 4.1709 3.0742 2.1440 38 1 5.1808 5.1096 1.2976 39 1 3.7274 5.4943 0.3446 40 1 3.6698 5.5626 2.1224 41 1 5.8989 2.2836 -0.9853 42 1 6.0449 2.4690 0.7790 43 1 7.3160 6.4362 -0.5661 44 1 7.7669 6.3625 -4.2378 45 1 11.2027 5.2488 0.1014 46 1 9.7332 4.5544 0.8549 47 1 11.0212 6.8013 1.8391 48 1 9.2716 6.5065 2.0469 49 1 8.8101 8.3153 0.7282 50 1 10.5592 8.6104 0.5210 51 1 8.8873 7.8674 -1.5602 52 1 10.6345 7.4731 -1.5208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193982043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:04 Heat of formation + Delta-G solvation = -128.898495 kcal Electronic energy + Delta-G solvation = -27612.627927 eV Core-core repulsion = 23996.410454 eV Total energy + Delta-G solvation = -3616.217473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.46937 -38.00655 -36.98627 -35.11286 -33.92256 -32.75135 -31.70512 -30.58456 -28.26531 -27.68244 -27.36584 -24.38119 -23.92015 -22.81993 -21.35182 -20.65593 -19.92252 -19.47569 -18.69925 -17.34431 -16.61614 -16.15572 -15.59160 -15.30119 -14.68921 -14.57337 -14.32587 -14.05774 -13.84080 -13.74139 -13.66211 -13.03865 -12.78343 -12.62753 -12.39555 -12.07717 -12.01058 -11.73917 -11.66222 -11.30213 -11.26119 -11.14227 -10.94093 -10.79529 -10.74003 -10.62098 -10.57974 -10.52635 -10.40687 -10.32040 -10.17103 -10.04188 -9.63679 -9.55831 -9.45450 -9.19331 -9.05297 -8.41206 -7.51472 -6.02149 -4.06382 3.27012 3.37517 3.38134 3.44815 4.25754 4.45891 4.62089 4.72691 4.84449 4.92721 5.08363 5.13511 5.26501 5.30691 5.48254 5.55467 5.59107 5.62935 5.66669 5.70402 5.73402 5.73868 5.76150 5.80176 5.84088 5.88730 5.97766 6.01510 6.07968 6.13055 6.22152 6.27077 6.35925 6.37869 6.44762 6.49995 6.64216 6.66940 6.70648 6.82664 6.85520 7.06457 7.14371 7.27225 7.36712 7.57407 7.91022 8.13417 8.29258 8.90520 9.02637 9.59144 9.81775 11.02603 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003683 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.443696 B = 7601.473919 C = 8836.071075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.089 4.089 6 H 0.080 0.920 7 C -0.114 4.114 8 C -0.151 4.151 9 C 0.096 3.904 10 O -0.378 6.378 11 C 0.642 3.358 12 O -0.577 6.577 13 N -0.662 5.662 14 C 0.313 3.687 15 C -0.499 4.499 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.879 5.879 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.103 4.103 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.382 0.618 44 H 0.260 0.740 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.048 0.952 51 H 0.075 0.925 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -3.881 8.439 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.107 4.107 6 H 0.099 0.901 7 C -0.152 4.152 8 C -0.208 4.208 9 C 0.020 3.980 10 O -0.294 6.294 11 C 0.394 3.606 12 O -0.467 6.467 13 N -0.316 5.316 14 C 0.231 3.769 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.517 5.517 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.202 1.202 23 C -0.167 4.167 24 C -0.160 4.160 25 C -0.168 4.168 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.214 0.786 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.106 -4.252 8.304 14.505 hybrid contribution -0.108 -0.359 -0.984 1.053 sum -11.214 -4.612 7.320 14.164 Atomic orbital electron populations 1.21778 0.96087 1.01375 1.01762 1.21545 0.95654 0.97166 1.01996 1.21650 0.95149 0.96527 1.02317 1.21551 0.95483 0.95615 1.02432 1.21301 0.93772 0.96322 0.99336 0.90143 1.21581 1.00375 0.96664 0.96541 1.21861 1.03193 0.95123 1.00633 1.22675 0.92830 0.81165 1.01285 1.86318 1.25127 1.31243 1.86697 1.18255 0.79808 0.85464 0.77119 1.90863 1.58585 1.40308 1.56897 1.45339 1.10380 1.03360 1.72514 1.18728 0.74895 0.92123 0.91167 1.21138 1.20695 1.20646 0.91297 0.92192 1.24935 0.95147 0.94349 0.98554 1.69911 1.24151 1.31097 1.26500 0.86707 0.78593 0.80910 0.82120 1.20304 1.21467 1.20165 1.22734 1.00420 0.96549 0.96960 1.22135 0.99474 0.96409 0.97952 1.22279 0.99687 0.97043 0.97749 1.22452 1.01904 0.96729 0.93102 0.92832 0.92788 0.92985 0.92071 0.92109 0.91636 0.91931 0.91634 0.91727 0.92182 0.92430 0.90914 0.92723 0.94042 0.92100 0.92259 0.78583 0.93051 0.92000 0.91825 0.93442 0.93364 0.93224 0.93337 0.90677 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.09 4.97 -26.73 -0.13 -1.23 16 4 C -0.11 -1.21 4.68 -26.73 -0.13 -1.34 16 5 C -0.09 -1.15 2.21 -90.62 -0.20 -1.35 16 6 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.11 -1.36 5.26 -26.73 -0.14 -1.50 16 8 C -0.15 -2.02 8.89 37.16 0.33 -1.68 16 9 C 0.10 1.62 4.77 37.16 0.18 1.80 16 10 O -0.38 -7.58 7.12 -40.31 -0.29 -7.87 16 11 C 0.64 15.15 8.13 54.05 0.44 15.59 16 12 O -0.58 -15.26 13.86 -19.28 -0.27 -15.53 16 13 N -0.66 -15.15 4.43 -51.69 -0.23 -15.38 16 14 C 0.31 7.38 0.26 -130.99 -0.03 7.34 16 15 C -0.50 -13.56 6.82 -34.44 -0.23 -13.80 16 16 H 0.06 1.70 7.78 -52.48 -0.41 1.29 16 17 C 0.07 2.00 5.29 -17.82 -0.09 1.91 16 18 N -0.88 -23.73 11.71 55.43 0.65 -23.08 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.13 -2.77 5.67 -25.07 -0.14 -2.91 16 24 C -0.12 -2.19 6.78 -25.62 -0.17 -2.37 16 25 C -0.13 -2.30 6.78 -25.61 -0.17 -2.47 16 26 C -0.10 -2.21 5.21 -25.09 -0.13 -2.34 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.58 6.48 -51.93 -0.34 0.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 6.38 -51.92 -0.33 0.29 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 39 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 42 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 43 H 0.38 8.23 8.62 -40.82 -0.35 7.88 16 44 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 45 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 46 H 0.06 1.48 6.56 -51.93 -0.34 1.13 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.07 1.70 7.48 -51.93 -0.39 1.32 16 52 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -28.94 399.73 -9.60 -38.54 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -10.05 Total: 6.88 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.43 Total: -6.32 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.42 Total: -38.46 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.55 Total: -23.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.94 -9.60 -38.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193982043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.357 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds