Wall clock time and date at job start Fri Apr 10 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 C 1.53000 * 109.47310 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47618 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47008 * 305.00099 * 5 4 3 7 7 C 1.52999 * 109.46766 * 65.00167 * 5 4 3 8 8 C 1.53000 * 109.46892 * 184.21686 * 7 5 4 9 9 C 1.53003 * 109.47204 * 184.99816 * 5 4 3 10 10 O 1.45199 * 109.46831 * 172.32470 * 9 5 4 11 11 C 1.34635 * 117.00197 * 180.02562 * 10 9 5 12 12 O 1.21511 * 119.99495 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00465 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00144 * 185.01493 * 13 11 10 15 15 C 1.50696 * 110.67405 * 57.05138 * 14 13 11 16 16 H 1.08008 * 120.00113 * 237.98003 * 15 14 13 17 17 C 1.37873 * 120.00180 * 57.98049 * 15 14 13 18 18 N 1.31514 * 119.99627 * 1.73359 * 17 15 14 19 19 Si 1.86804 * 120.00131 * 181.72789 * 17 15 14 20 20 H 1.48497 * 109.47182 * 60.00287 * 19 17 15 21 21 H 1.48504 * 109.46907 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47374 * 299.99884 * 19 17 15 23 23 C 1.54898 * 110.75421 * 293.61408 * 14 13 11 24 24 C 1.54256 * 104.19667 * 279.63084 * 23 14 13 25 25 C 1.53877 * 106.59787 * 336.38622 * 24 23 14 26 26 C 1.54260 * 106.59957 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47014 * 299.99790 * 1 2 3 28 28 H 1.09001 * 109.47463 * 59.99522 * 1 2 3 29 29 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47014 * 240.00210 * 2 1 3 31 31 H 1.09001 * 109.47463 * 120.00478 * 2 1 3 32 32 H 1.08999 * 109.47364 * 60.00657 * 3 2 1 33 33 H 1.08998 * 109.47739 * 300.00170 * 3 2 1 34 34 H 1.09000 * 109.47126 * 59.99986 * 4 3 2 35 35 H 1.09001 * 109.47099 * 300.00410 * 4 3 2 36 36 H 1.09007 * 109.47259 * 304.20988 * 7 5 4 37 37 H 1.09000 * 109.47342 * 64.21716 * 7 5 4 38 38 H 1.09001 * 109.47265 * 291.12364 * 8 7 5 39 39 H 1.09002 * 109.47118 * 51.12440 * 8 7 5 40 40 H 1.09007 * 109.47172 * 171.12231 * 8 7 5 41 41 H 1.09005 * 109.46585 * 52.33129 * 9 5 4 42 42 H 1.08990 * 109.47019 * 292.32412 * 9 5 4 43 43 H 0.96994 * 119.99869 * 5.00505 * 13 11 10 44 44 H 0.97006 * 119.99770 * 185.01412 * 18 17 15 45 45 H 1.08994 * 110.48550 * 160.94585 * 23 14 13 46 46 H 1.08998 * 110.48350 * 38.30927 * 23 14 13 47 47 H 1.09006 * 110.03216 * 217.10547 * 24 23 14 48 48 H 1.08992 * 110.03655 * 95.67140 * 24 23 14 49 49 H 1.09002 * 110.03362 * 119.28723 * 25 24 23 50 50 H 1.08995 * 110.03417 * 240.66550 * 25 24 23 51 51 H 1.09003 * 110.48905 * 142.28608 * 26 25 24 52 52 H 1.09003 * 110.48783 * 264.92701 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6758 3.5682 1.3080 8 6 4.0935 5.0394 1.2651 9 6 5.6048 2.8868 -0.1263 10 8 6.0737 4.2490 -0.3082 11 6 7.4021 4.4261 -0.4372 12 8 8.1492 3.4686 -0.3984 13 7 7.9033 5.6654 -0.6084 14 6 9.3351 5.8484 -0.8585 15 6 9.7657 5.0731 -2.0769 16 1 10.5447 4.3293 -1.9962 17 6 9.1653 5.3132 -3.2946 18 7 8.2408 6.2426 -3.3999 19 14 9.6652 4.3186 -4.7947 20 1 9.4035 2.8786 -4.5436 21 1 8.8777 4.7675 -5.9711 22 1 11.1119 4.5196 -5.0624 23 6 10.1662 5.4357 0.3818 24 6 10.0725 6.6545 1.3226 25 6 9.7619 7.8723 0.4347 26 6 9.6769 7.3508 -1.0146 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 2.5952 3.5008 1.4343 37 1 4.1709 3.0742 2.1440 38 1 5.1808 5.1096 1.2976 39 1 3.7274 5.4943 0.3446 40 1 3.6698 5.5626 2.1224 41 1 5.8989 2.2836 -0.9853 42 1 6.0449 2.4690 0.7790 43 1 7.3160 6.4362 -0.5661 44 1 7.7669 6.3625 -4.2378 45 1 11.2027 5.2488 0.1014 46 1 9.7332 4.5544 0.8549 47 1 11.0212 6.8013 1.8391 48 1 9.2716 6.5065 2.0469 49 1 8.8101 8.3153 0.7282 50 1 10.5592 8.6104 0.5210 51 1 8.8873 7.8674 -1.5602 52 1 10.6345 7.4731 -1.5208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193982043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:03 Heat of formation + Delta-G solvation = -143.004333 kcal Electronic energy + Delta-G solvation = -27613.239602 eV Core-core repulsion = 23996.410454 eV Total energy + Delta-G solvation = -3616.829148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21304 -39.48734 -38.29730 -36.59162 -34.98629 -34.65985 -33.62519 -31.51235 -29.72602 -29.29984 -28.83902 -25.99469 -25.33210 -23.74655 -22.64883 -21.81587 -21.09989 -21.02702 -20.48060 -19.08376 -18.58938 -17.59370 -17.00962 -16.63669 -16.37353 -16.23101 -15.70348 -15.54471 -14.99973 -14.89031 -14.72416 -14.44762 -14.02688 -13.94269 -13.64792 -13.55640 -13.31158 -13.14739 -12.94411 -12.85613 -12.77622 -12.50545 -12.33487 -12.17412 -12.03808 -11.98357 -11.92775 -11.71822 -11.64013 -11.50035 -11.45185 -11.39159 -11.30203 -11.13323 -11.07332 -11.05734 -10.82580 -10.45303 -9.41894 -8.09580 -6.18340 1.34165 1.36709 1.43836 1.66949 2.37456 2.43957 3.14854 3.59305 3.76503 3.87418 4.03668 4.13008 4.13501 4.14663 4.26081 4.27804 4.33283 4.42433 4.49088 4.56947 4.60723 4.75114 4.80924 4.81556 4.90655 4.95346 4.97890 5.00416 5.03862 5.07579 5.11765 5.16193 5.18290 5.21333 5.24419 5.28872 5.32819 5.36779 5.39448 5.43201 5.49320 5.53647 5.57580 5.65141 5.70055 5.71640 5.89496 6.22970 6.36651 6.80047 7.13545 7.48610 7.97832 8.91737 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003683 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.443696 B = 7601.473919 C = 8836.071075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.109 4.109 5 C -0.079 4.079 6 H 0.073 0.927 7 C -0.110 4.110 8 C -0.150 4.150 9 C 0.091 3.909 10 O -0.371 6.371 11 C 0.637 3.363 12 O -0.612 6.612 13 N -0.655 5.655 14 C 0.301 3.699 15 C -0.518 4.518 16 H 0.035 0.965 17 C 0.039 3.961 18 N -0.887 5.887 19 Si 0.931 3.069 20 H -0.293 1.293 21 H -0.279 1.279 22 H -0.268 1.268 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.119 4.119 26 C -0.096 4.096 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.389 0.611 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 -3.230 9.722 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.098 4.098 6 H 0.092 0.908 7 C -0.147 4.147 8 C -0.207 4.207 9 C 0.016 3.984 10 O -0.286 6.286 11 C 0.390 3.610 12 O -0.504 6.504 13 N -0.310 5.310 14 C 0.219 3.781 15 C -0.557 4.557 16 H 0.053 0.947 17 C -0.164 4.164 18 N -0.525 5.525 19 Si 0.758 3.242 20 H -0.220 1.220 21 H -0.204 1.204 22 H -0.193 1.193 23 C -0.165 4.165 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.222 0.778 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.078 0.922 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.464 -3.580 9.586 16.126 hybrid contribution 0.300 -0.633 -1.381 1.548 sum -12.164 -4.213 8.205 15.266 Atomic orbital electron populations 1.21771 0.95290 1.01897 1.01977 1.21538 0.96346 0.96446 1.02026 1.21613 0.93547 0.97317 1.02643 1.21536 0.96782 0.93789 1.02517 1.21301 0.90394 0.98094 0.99968 0.90822 1.21578 1.01958 0.95449 0.95731 1.21827 1.01383 0.96408 1.01060 1.23007 0.95582 0.79416 1.00415 1.86356 1.22915 1.33097 1.86215 1.18429 0.80689 0.85218 0.76698 1.90833 1.59794 1.41355 1.58446 1.45137 1.10395 1.03463 1.71971 1.18830 0.75308 0.93226 0.90771 1.21325 1.20532 1.20608 0.93270 0.94706 1.25405 0.95481 0.95257 1.00212 1.69962 1.24410 1.31466 1.26684 0.86052 0.78915 0.78883 0.80345 1.21966 1.20444 1.19282 1.22644 0.99317 0.97556 0.96999 1.22068 1.01244 0.94348 0.97309 1.22200 1.01617 0.97291 0.94539 1.22287 1.00545 0.95039 0.95619 0.92304 0.92891 0.92372 0.92508 0.91694 0.90680 0.92192 0.92340 0.90970 0.89648 0.91928 0.93568 0.93565 0.92172 0.94002 0.92222 0.77772 0.93181 0.92719 0.94039 0.90928 0.92492 0.91631 0.90779 0.92171 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.13 -1.86 5.93 30.59 0.18 -1.68 16 3 C -0.11 -1.86 4.97 30.59 0.15 -1.71 16 4 C -0.11 -2.19 4.68 30.59 0.14 -2.05 16 5 C -0.08 -1.98 2.21 -10.79 -0.02 -2.01 16 6 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 7 C -0.11 -2.40 5.26 30.59 0.16 -2.24 16 8 C -0.15 -3.80 8.89 71.98 0.64 -3.16 16 9 C 0.09 3.13 4.77 71.98 0.34 3.47 16 10 O -0.37 -15.16 7.12 -55.45 -0.39 -15.56 16 11 C 0.64 30.83 8.13 129.79 1.05 31.88 16 12 O -0.61 -33.55 13.86 19.81 0.27 -33.28 16 13 N -0.66 -30.39 4.43 -547.87 -2.43 -32.81 16 14 C 0.30 14.37 0.26 4.14 0.00 14.37 16 15 C -0.52 -28.96 6.82 25.60 0.17 -28.78 16 16 H 0.03 2.06 7.78 -2.91 -0.02 2.04 16 17 C 0.04 2.13 5.29 84.65 0.45 2.57 16 18 N -0.89 -48.30 11.71 21.45 0.25 -48.04 16 19 Si 0.93 45.28 29.54 68.60 2.03 47.31 16 20 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.13 -5.49 5.67 31.67 0.18 -5.31 16 24 C -0.11 -3.78 6.78 31.32 0.21 -3.56 16 25 C -0.12 -3.89 6.78 31.32 0.21 -3.68 16 26 C -0.10 -4.07 5.21 31.66 0.16 -3.90 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.10 6.48 -2.39 -0.02 1.08 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.48 6.38 -2.38 -0.02 1.47 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.42 6.00 -2.39 -0.01 1.40 16 39 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.04 1.58 8.12 -2.38 -0.02 1.56 16 42 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 43 H 0.39 16.80 8.62 -92.71 -0.80 16.00 16 44 H 0.26 13.77 8.32 -92.70 -0.77 12.99 16 45 H 0.05 2.39 8.04 -2.39 -0.02 2.37 16 46 H 0.04 1.96 6.56 -2.39 -0.02 1.94 16 47 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 48 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.06 2.70 7.48 -2.39 -0.02 2.69 16 52 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -63.51 399.73 4.55 -58.96 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.06 Total: 30.47 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.76 Total: -7.04 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.18 Total: -80.86 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.12 Total: -48.84 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -63.51 4.55 -58.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193982043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.047 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds