Wall clock time and date at job start Fri Apr 10 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 C 1.53006 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46862 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46862 * 180.02562 * 6 5 4 8 8 O 1.45203 * 109.46909 * 179.97438 * 7 6 5 9 9 C 1.34637 * 116.99510 * 179.97438 * 8 7 6 10 10 O 1.21508 * 120.00401 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99439 * 180.02562 * 9 8 7 12 12 C 1.46508 * 119.99859 * 185.07897 * 11 9 8 13 13 C 1.50700 * 109.46794 * 270.00000 * 12 11 9 14 14 H 1.07995 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00061 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99650 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47171 * 90.00372 * 17 15 13 19 19 H 1.48502 * 109.46961 * 210.00507 * 17 15 13 20 20 H 1.48498 * 109.47372 * 329.99830 * 17 15 13 21 21 C 1.46503 * 120.00363 * 5.07337 * 11 9 8 22 22 C 1.54266 * 110.03209 * 117.86746 * 21 11 9 23 23 C 1.54959 * 104.16197 * 95.75350 * 22 21 11 24 24 C 1.54890 * 102.77513 * 37.89007 * 23 22 21 25 25 C 1.53873 * 110.03545 * 235.08436 * 21 11 9 26 26 H 1.09000 * 109.47402 * 299.99604 * 1 2 3 27 27 H 1.08998 * 109.47388 * 59.99800 * 1 2 3 28 28 H 1.09006 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47224 * 240.00701 * 2 1 3 30 30 H 1.08998 * 109.47388 * 120.00200 * 2 1 3 31 31 H 1.08997 * 109.47157 * 60.00431 * 3 2 1 32 32 H 1.08998 * 109.47308 * 300.00249 * 3 2 1 33 33 H 1.08997 * 109.47197 * 60.00039 * 4 3 2 34 34 H 1.09007 * 109.46873 * 299.99773 * 4 3 2 35 35 H 1.09000 * 109.47122 * 59.99413 * 5 4 3 36 36 H 1.08998 * 109.46970 * 299.99645 * 5 4 3 37 37 H 1.08997 * 109.47220 * 59.99678 * 6 5 4 38 38 H 1.08998 * 109.47054 * 299.99613 * 6 5 4 39 39 H 1.08997 * 109.47466 * 59.99828 * 7 6 5 40 40 H 1.08998 * 109.46970 * 299.99665 * 7 6 5 41 41 H 1.09000 * 109.46852 * 29.99423 * 12 11 9 42 42 H 1.08997 * 109.47202 * 149.99601 * 12 11 9 43 43 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 44 44 H 1.09001 * 110.01405 * 356.47575 * 21 11 9 45 45 H 1.08997 * 110.48942 * 214.40911 * 22 21 11 46 46 H 1.09007 * 110.48265 * 337.04655 * 22 21 11 47 47 H 1.09001 * 110.72230 * 279.57581 * 23 22 21 48 48 H 1.09003 * 110.91944 * 156.29582 * 23 22 21 49 49 H 1.09002 * 110.48723 * 203.40012 * 24 23 22 50 50 H 1.09005 * 110.60190 * 80.81843 * 24 23 22 51 51 H 1.08997 * 110.02969 * 359.94983 * 25 21 11 52 52 H 1.09003 * 110.03356 * 121.37955 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1198 4.3277 0.0013 8 8 7.5718 4.3277 0.0019 9 6 8.1830 5.5274 0.0025 10 8 7.5212 6.5465 0.0021 11 7 9.5289 5.5980 0.0026 12 6 10.1943 6.8983 0.1156 13 6 10.4158 7.4704 -1.2609 14 1 10.0937 6.9203 -2.1326 15 6 11.0307 8.6958 -1.4074 16 7 11.2245 9.1948 -2.6086 17 14 11.5886 9.6470 0.1004 18 1 12.9835 9.2658 0.4381 19 1 11.5281 11.1035 -0.1828 20 1 10.6974 9.3279 1.2447 21 6 10.3266 4.3743 -0.1102 22 6 11.1767 4.4144 -1.3969 23 6 12.5543 4.9441 -0.9248 24 6 12.7291 4.2620 0.4547 25 6 11.3131 4.2778 1.0667 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.7168 3.3985 0.8904 36 1 3.7162 3.3994 -0.8895 37 1 5.9732 2.3717 -0.8902 38 1 5.9732 2.3710 0.8898 39 1 5.7565 4.8408 0.8917 40 1 5.7565 4.8423 -0.8883 41 1 9.5687 7.5774 0.6949 42 1 11.1545 6.7729 0.6159 43 1 11.6568 10.0571 -2.7116 44 1 9.6727 3.5024 -0.1217 45 1 11.2768 3.4147 -1.8193 46 1 10.7347 5.0947 -2.1250 47 1 12.5350 6.0289 -0.8197 48 1 13.3447 4.6379 -1.6102 49 1 13.4200 4.8310 1.0768 50 1 13.0811 3.2374 0.3342 51 1 11.1990 5.1418 1.7214 52 1 11.1379 3.3590 1.6264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194003332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:07 Heat of formation + Delta-G solvation = -121.997313 kcal Electronic energy + Delta-G solvation = -26506.460034 eV Core-core repulsion = 22890.541818 eV Total energy + Delta-G solvation = -3615.918216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96928 -38.10701 -36.99078 -35.86595 -33.98483 -33.68458 -32.39663 -30.32754 -28.64335 -28.18574 -26.87294 -25.99729 -23.17878 -22.24027 -21.30219 -21.02616 -20.67830 -20.12234 -19.09525 -17.35295 -16.87922 -16.49020 -16.28661 -15.86397 -14.98325 -14.83879 -14.74284 -14.31791 -14.17460 -13.87995 -13.58349 -13.31486 -12.92391 -12.82948 -12.61910 -12.48632 -12.30592 -11.98982 -11.75903 -11.62307 -11.38894 -11.28067 -11.17996 -11.09285 -10.93145 -10.91935 -10.72241 -10.71580 -10.67154 -10.54467 -10.46092 -10.32126 -10.11138 -10.02673 -9.84658 -9.63649 -9.32362 -8.56912 -7.74948 -6.06308 -4.03440 2.81287 3.26922 3.36509 3.39429 3.61681 4.27944 4.40445 4.58914 4.59290 4.73069 4.81769 4.94434 5.04901 5.09390 5.11816 5.15065 5.26493 5.30343 5.37474 5.39422 5.44078 5.48379 5.61171 5.65189 5.68604 5.70868 5.79380 5.85900 5.86831 5.94769 5.99300 6.00735 6.02363 6.04306 6.14938 6.16189 6.16472 6.29060 6.33403 6.50101 6.60575 6.68806 6.81470 6.95647 7.08088 7.17467 7.34297 7.61566 8.26861 8.49428 8.97305 9.12397 9.53539 11.06605 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002567 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.826050 B =10906.605634 C =11795.399953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.118 4.118 7 C 0.087 3.913 8 O -0.380 6.380 9 C 0.642 3.358 10 O -0.569 6.569 11 N -0.566 5.566 12 C 0.229 3.771 13 C -0.517 4.517 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.866 3.134 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.142 3.858 22 C -0.131 4.131 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.135 4.135 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 -18.188 6.839 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.155 4.155 7 C 0.011 3.989 8 O -0.295 6.295 9 C 0.395 3.605 10 O -0.458 6.458 11 N -0.305 5.305 12 C 0.110 3.890 13 C -0.556 4.556 14 H 0.096 0.904 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.693 3.307 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.189 1.189 21 C 0.037 3.963 22 C -0.169 4.169 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.807 -17.723 6.753 21.828 hybrid contribution 0.297 0.738 0.640 1.021 sum -10.510 -16.984 7.393 21.297 Atomic orbital electron populations 1.21785 0.96022 1.01481 1.01818 1.21545 0.95757 0.97075 1.01970 1.21640 0.95459 0.96649 1.02172 1.21585 0.95235 0.96507 1.02257 1.21502 0.94117 0.97219 1.02653 1.21567 0.95248 0.95257 1.03474 1.22819 0.76163 0.97437 1.02436 1.86170 1.22850 1.32564 1.87895 1.18067 0.83729 0.81406 0.77299 1.90960 1.64199 1.34721 1.55907 1.46998 1.00841 1.09171 1.73444 1.19708 0.92062 0.78540 0.98692 1.21295 1.38544 1.04013 0.91738 0.90351 1.24810 0.95621 0.96900 0.95564 1.69884 1.43242 1.18866 1.21432 0.86989 0.79422 0.80030 0.84227 1.20016 1.20976 1.18921 1.21678 0.92800 0.86695 0.95103 1.22733 0.96103 1.00478 0.97577 1.22575 0.96152 1.02621 0.94783 1.22349 0.96092 1.00002 0.97599 1.22555 0.95076 1.01790 0.97898 0.92792 0.92761 0.92906 0.92068 0.92110 0.92000 0.91945 0.91825 0.91906 0.91634 0.91520 0.90898 0.91045 0.91769 0.91525 0.94451 0.94711 0.92631 0.89466 0.92400 0.89135 0.88961 0.92575 0.92185 0.92326 0.91002 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 4 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 5 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 6 C -0.12 -1.25 5.59 -26.73 -0.15 -1.40 16 7 C 0.09 1.27 5.47 37.16 0.20 1.48 16 8 O -0.38 -6.88 8.80 -40.31 -0.35 -7.24 16 9 C 0.64 14.22 8.38 54.06 0.45 14.68 16 10 O -0.57 -14.61 15.76 -19.28 -0.30 -14.92 16 11 N -0.57 -12.17 2.34 -171.94 -0.40 -12.57 16 12 C 0.23 5.54 3.10 -5.19 -0.02 5.53 16 13 C -0.52 -14.32 7.75 -34.44 -0.27 -14.59 16 14 H 0.08 2.39 6.73 -52.49 -0.35 2.04 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 17 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 21 C 0.14 2.47 3.36 -66.81 -0.22 2.25 16 22 C -0.13 -2.31 5.88 -25.03 -0.15 -2.46 16 23 C -0.12 -2.13 6.36 -24.70 -0.16 -2.29 16 24 C -0.12 -1.76 6.83 -25.07 -0.17 -1.94 16 25 C -0.13 -2.05 5.97 -25.62 -0.15 -2.20 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.99 6.56 -51.93 -0.34 0.64 16 42 H 0.04 0.79 5.05 -51.93 -0.26 0.53 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 1.41 6.87 -51.93 -0.36 1.05 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.94 6.02 -51.93 -0.31 1.62 16 47 H 0.09 1.91 5.91 -51.93 -0.31 1.60 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 1.18 6.67 -51.93 -0.35 0.83 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -31.69 399.70 -9.77 -41.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -9.90 Total: 0.68 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.94 Total: -3.66 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.37 Total: -38.85 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.66 Total: -22.16 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.69 -9.77 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194003332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.542 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds