Wall clock time and date at job start Fri Apr 10 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 C 1.53006 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46862 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46862 * 180.02562 * 6 5 4 8 8 O 1.45203 * 109.46909 * 179.97438 * 7 6 5 9 9 C 1.34637 * 116.99510 * 179.97438 * 8 7 6 10 10 O 1.21508 * 120.00401 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99439 * 180.02562 * 9 8 7 12 12 C 1.46508 * 119.99859 * 185.07897 * 11 9 8 13 13 C 1.50700 * 109.46794 * 270.00000 * 12 11 9 14 14 H 1.07995 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00061 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99650 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47171 * 90.00372 * 17 15 13 19 19 H 1.48502 * 109.46961 * 210.00507 * 17 15 13 20 20 H 1.48498 * 109.47372 * 329.99830 * 17 15 13 21 21 C 1.46503 * 120.00363 * 5.07337 * 11 9 8 22 22 C 1.54266 * 110.03209 * 117.86746 * 21 11 9 23 23 C 1.54959 * 104.16197 * 95.75350 * 22 21 11 24 24 C 1.54890 * 102.77513 * 37.89007 * 23 22 21 25 25 C 1.53873 * 110.03545 * 235.08436 * 21 11 9 26 26 H 1.09000 * 109.47402 * 299.99604 * 1 2 3 27 27 H 1.08998 * 109.47388 * 59.99800 * 1 2 3 28 28 H 1.09006 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47224 * 240.00701 * 2 1 3 30 30 H 1.08998 * 109.47388 * 120.00200 * 2 1 3 31 31 H 1.08997 * 109.47157 * 60.00431 * 3 2 1 32 32 H 1.08998 * 109.47308 * 300.00249 * 3 2 1 33 33 H 1.08997 * 109.47197 * 60.00039 * 4 3 2 34 34 H 1.09007 * 109.46873 * 299.99773 * 4 3 2 35 35 H 1.09000 * 109.47122 * 59.99413 * 5 4 3 36 36 H 1.08998 * 109.46970 * 299.99645 * 5 4 3 37 37 H 1.08997 * 109.47220 * 59.99678 * 6 5 4 38 38 H 1.08998 * 109.47054 * 299.99613 * 6 5 4 39 39 H 1.08997 * 109.47466 * 59.99828 * 7 6 5 40 40 H 1.08998 * 109.46970 * 299.99665 * 7 6 5 41 41 H 1.09000 * 109.46852 * 29.99423 * 12 11 9 42 42 H 1.08997 * 109.47202 * 149.99601 * 12 11 9 43 43 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 44 44 H 1.09001 * 110.01405 * 356.47575 * 21 11 9 45 45 H 1.08997 * 110.48942 * 214.40911 * 22 21 11 46 46 H 1.09007 * 110.48265 * 337.04655 * 22 21 11 47 47 H 1.09001 * 110.72230 * 279.57581 * 23 22 21 48 48 H 1.09003 * 110.91944 * 156.29582 * 23 22 21 49 49 H 1.09002 * 110.48723 * 203.40012 * 24 23 22 50 50 H 1.09005 * 110.60190 * 80.81843 * 24 23 22 51 51 H 1.08997 * 110.02969 * 359.94983 * 25 21 11 52 52 H 1.09003 * 110.03356 * 121.37955 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1198 4.3277 0.0013 8 8 7.5718 4.3277 0.0019 9 6 8.1830 5.5274 0.0025 10 8 7.5212 6.5465 0.0021 11 7 9.5289 5.5980 0.0026 12 6 10.1943 6.8983 0.1156 13 6 10.4158 7.4704 -1.2609 14 1 10.0937 6.9203 -2.1326 15 6 11.0307 8.6958 -1.4074 16 7 11.2245 9.1948 -2.6086 17 14 11.5886 9.6470 0.1004 18 1 12.9835 9.2658 0.4381 19 1 11.5281 11.1035 -0.1828 20 1 10.6974 9.3279 1.2447 21 6 10.3266 4.3743 -0.1102 22 6 11.1767 4.4144 -1.3969 23 6 12.5543 4.9441 -0.9248 24 6 12.7291 4.2620 0.4547 25 6 11.3131 4.2778 1.0667 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.7168 3.3985 0.8904 36 1 3.7162 3.3994 -0.8895 37 1 5.9732 2.3717 -0.8902 38 1 5.9732 2.3710 0.8898 39 1 5.7565 4.8408 0.8917 40 1 5.7565 4.8423 -0.8883 41 1 9.5687 7.5774 0.6949 42 1 11.1545 6.7729 0.6159 43 1 11.6568 10.0571 -2.7116 44 1 9.6727 3.5024 -0.1217 45 1 11.2768 3.4147 -1.8193 46 1 10.7347 5.0947 -2.1250 47 1 12.5350 6.0289 -0.8197 48 1 13.3447 4.6379 -1.6102 49 1 13.4200 4.8310 1.0768 50 1 13.0811 3.2374 0.3342 51 1 11.1990 5.1418 1.7214 52 1 11.1379 3.3590 1.6264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194003332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:06 Heat of formation + Delta-G solvation = -138.259287 kcal Electronic energy + Delta-G solvation = -26507.165206 eV Core-core repulsion = 22890.541818 eV Total energy + Delta-G solvation = -3616.623388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61628 -39.53599 -37.93014 -37.16913 -35.46027 -34.84679 -34.37959 -31.23699 -30.42601 -29.49391 -28.26726 -27.00205 -24.80697 -23.37840 -22.32960 -21.94063 -21.71503 -21.41412 -20.62359 -19.17447 -18.77227 -17.91223 -17.69883 -16.80771 -16.57156 -16.10876 -16.01283 -15.68692 -15.25321 -14.94832 -14.73237 -14.63581 -14.29447 -14.09432 -13.93607 -13.64609 -13.42754 -13.32257 -13.03883 -12.90706 -12.77825 -12.56022 -12.32071 -12.28804 -12.11984 -12.01223 -11.89468 -11.87054 -11.78599 -11.71011 -11.66447 -11.52054 -11.40810 -11.35788 -11.31370 -11.23378 -11.19448 -10.76478 -9.52494 -8.27736 -6.29807 1.23466 1.31893 1.38456 1.46042 1.86082 2.33180 2.94030 3.07398 3.73170 3.80940 3.84684 3.88747 4.00748 4.09996 4.12349 4.22749 4.33855 4.35874 4.44521 4.59570 4.62007 4.63432 4.67442 4.68075 4.70192 4.74349 4.80471 4.84440 4.93407 4.94855 4.98806 4.99634 5.08614 5.10495 5.15911 5.17012 5.23409 5.26842 5.27838 5.37271 5.40497 5.43872 5.48399 5.50799 5.55358 5.56485 5.60341 5.73328 6.28544 6.57264 6.69711 7.26246 7.42730 8.88664 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002567 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.826050 B =10906.605634 C =11795.399953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.105 4.105 7 C 0.078 3.922 8 O -0.368 6.368 9 C 0.638 3.362 10 O -0.614 6.614 11 N -0.570 5.570 12 C 0.242 3.758 13 C -0.511 4.511 14 H 0.034 0.966 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.932 3.068 18 H -0.250 1.250 19 H -0.284 1.284 20 H -0.257 1.257 21 C 0.134 3.866 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.111 4.111 25 C -0.130 4.130 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.058 0.942 43 H 0.266 0.734 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.058 0.942 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -20.678 9.123 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.004 3.996 8 O -0.282 6.282 9 C 0.392 3.608 10 O -0.506 6.506 11 N -0.307 5.307 12 C 0.122 3.878 13 C -0.550 4.550 14 H 0.052 0.948 15 C -0.183 4.183 16 N -0.584 5.584 17 Si 0.755 3.245 18 H -0.174 1.174 19 H -0.210 1.210 20 H -0.181 1.181 21 C 0.032 3.968 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.149 4.149 25 C -0.169 4.169 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.077 0.923 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.175 -20.276 9.044 24.422 hybrid contribution 0.010 1.431 -0.189 1.443 sum -10.165 -18.845 8.855 23.171 Atomic orbital electron populations 1.21794 0.95765 1.01858 1.01787 1.21541 0.96014 0.96604 1.02151 1.21624 0.95088 0.97095 1.02032 1.21541 0.95511 0.95365 1.02672 1.21493 0.92617 0.98347 1.02694 1.21553 0.96299 0.92152 1.04228 1.23208 0.74170 1.00368 1.01862 1.86184 1.24757 1.30000 1.87257 1.18272 0.83945 0.81915 0.76670 1.90919 1.65312 1.36525 1.57895 1.47044 1.01150 1.09651 1.72904 1.19369 0.92682 0.79638 0.96136 1.21366 1.37675 1.03831 0.92118 0.94802 1.25684 0.95845 0.97999 0.98763 1.70036 1.44798 1.19567 1.23970 0.85944 0.80189 0.78144 0.80222 1.17415 1.20982 1.18076 1.22046 0.93278 0.85331 0.96185 1.22690 0.96263 1.00997 0.96787 1.22521 0.96205 1.00341 0.97441 1.22323 0.95815 1.01557 0.95180 1.22560 0.94622 1.02983 0.96697 0.92741 0.92904 0.92352 0.92012 0.91794 0.91992 0.92289 0.91631 0.91251 0.91342 0.91877 0.90525 0.89828 0.91795 0.92845 0.96537 0.92456 0.92498 0.87648 0.89194 0.94002 0.93101 0.91340 0.91314 0.89120 0.92317 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.42 5.93 30.59 0.18 -1.23 16 3 C -0.12 -1.51 5.21 30.60 0.16 -1.35 16 4 C -0.11 -1.48 5.21 30.60 0.16 -1.32 16 5 C -0.11 -1.83 5.21 30.59 0.16 -1.67 16 6 C -0.10 -2.06 5.59 30.59 0.17 -1.89 16 7 C 0.08 2.29 5.47 71.98 0.39 2.68 16 8 O -0.37 -13.18 8.80 -55.46 -0.49 -13.67 16 9 C 0.64 28.78 8.38 129.79 1.09 29.87 16 10 O -0.61 -32.69 15.76 19.81 0.31 -32.38 16 11 N -0.57 -24.69 2.34 -928.32 -2.17 -26.86 16 12 C 0.24 11.91 3.10 85.63 0.27 12.18 16 13 C -0.51 -29.59 7.75 25.60 0.20 -29.39 16 14 H 0.03 2.22 6.73 -2.91 -0.02 2.20 16 15 C 0.01 0.87 5.47 84.66 0.46 1.33 16 16 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 17 Si 0.93 44.11 27.47 68.60 1.88 46.00 16 18 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 21 C 0.13 4.48 3.36 45.71 0.15 4.64 16 22 C -0.13 -4.50 5.88 31.69 0.19 -4.32 16 23 C -0.13 -4.25 6.36 31.91 0.20 -4.04 16 24 C -0.11 -2.79 6.83 31.67 0.22 -2.57 16 25 C -0.13 -3.52 5.97 31.32 0.19 -3.33 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.02 0.89 6.56 -2.39 -0.02 0.87 16 42 H 0.06 2.57 5.05 -2.39 -0.01 2.56 16 43 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 44 H 0.11 3.13 6.87 -2.39 -0.02 3.12 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.87 6.02 -2.38 -0.01 1.86 16 47 H 0.05 2.11 5.91 -2.39 -0.01 2.10 16 48 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 51 H 0.06 1.76 6.67 -2.39 -0.02 1.75 16 52 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -72.80 399.70 5.53 -67.27 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.80 Total: 19.95 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.90 Total: -1.35 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.87 Total: -85.82 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.18 Total: -46.05 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -72.80 5.53 -67.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194003332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.991 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds