Wall clock time and date at job start Fri Apr 10 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46640 * 2 1 4 4 C 1.53009 * 109.46842 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46640 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46867 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47221 * 180.02562 * 7 6 5 9 9 O 1.45199 * 109.47352 * 180.02562 * 8 7 6 10 10 C 1.34639 * 117.00312 * 179.97438 * 9 8 7 11 11 O 1.21512 * 119.99628 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00349 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.62692 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77663 * 233.59122 * 13 12 10 15 15 C 1.53046 * 109.31028 * 305.36644 * 14 13 12 16 16 C 1.53046 * 109.53579 * 61.36644 * 15 14 13 17 17 H 1.09003 * 109.49871 * 58.61696 * 16 15 14 18 18 C 1.50700 * 109.49417 * 178.68258 * 16 15 14 19 19 H 1.08000 * 120.00079 * 359.97438 * 18 16 15 20 20 C 1.37880 * 119.99902 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99723 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00135 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47338 * 120.00002 * 22 20 18 25 25 H 1.48500 * 109.47059 * 240.00248 * 22 20 18 26 26 C 1.46919 * 120.63129 * 180.02562 * 12 10 9 27 27 H 1.08994 * 109.47159 * 60.00091 * 1 2 3 28 28 H 1.09002 * 109.46661 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46991 * 299.99686 * 1 2 3 30 30 H 1.08999 * 109.46991 * 240.00314 * 2 1 3 31 31 H 1.09003 * 109.46976 * 119.99686 * 2 1 3 32 32 H 1.08999 * 109.47173 * 60.00425 * 3 2 1 33 33 H 1.08994 * 109.47271 * 299.99841 * 3 2 1 34 34 H 1.08999 * 109.46857 * 60.00271 * 4 3 2 35 35 H 1.08994 * 109.47090 * 299.99991 * 4 3 2 36 36 H 1.08999 * 109.47173 * 60.00465 * 5 4 3 37 37 H 1.09003 * 109.47180 * 299.99601 * 5 4 3 38 38 H 1.08998 * 109.47467 * 60.00547 * 6 5 4 39 39 H 1.08995 * 109.47606 * 299.99621 * 6 5 4 40 40 H 1.08991 * 109.47302 * 60.00062 * 7 6 5 41 41 H 1.09003 * 109.47034 * 299.99611 * 7 6 5 42 42 H 1.08998 * 109.47419 * 59.99268 * 8 7 6 43 43 H 1.09008 * 109.46707 * 299.99993 * 8 7 6 44 44 H 1.09000 * 109.58699 * 353.37880 * 13 12 10 45 45 H 1.08998 * 109.58257 * 113.80833 * 13 12 10 46 46 H 1.09001 * 109.49998 * 185.42005 * 14 13 12 47 47 H 1.08998 * 109.50010 * 65.31705 * 14 13 12 48 48 H 1.08993 * 109.46296 * 301.34732 * 15 14 13 49 49 H 1.09000 * 109.45696 * 181.38288 * 15 14 13 50 50 H 0.97003 * 119.99618 * 179.97438 * 21 20 18 51 51 H 1.09002 * 109.59216 * 6.61793 * 26 12 10 52 52 H 1.09004 * 109.70105 * 246.26484 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1198 4.3277 0.0000 8 6 7.6498 4.3278 -0.0006 9 8 8.1337 5.6968 0.0000 10 6 9.4685 5.8733 0.0000 11 8 10.2087 4.9096 0.0001 12 7 9.9836 7.1187 0.0011 13 6 9.1014 8.2936 0.0028 14 6 9.4932 9.2061 -1.1637 15 6 10.9838 9.5392 -1.0672 16 6 11.8036 8.2505 -1.1655 17 1 11.5836 7.7504 -2.1087 18 6 13.2722 8.5827 -1.1028 19 1 13.5896 9.6102 -1.0033 20 6 14.2105 7.5749 -1.1726 21 7 13.8239 6.3238 -1.2943 22 14 16.0309 7.9866 -1.0956 23 1 16.2009 9.4557 -0.9608 24 1 16.6430 7.3075 0.0746 25 1 16.6961 7.5241 -2.3401 26 6 11.4379 7.3273 0.0007 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9336 0.9287 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 3.7162 3.3994 0.8896 37 1 3.7169 3.3984 -0.8905 38 1 5.9732 2.3710 -0.8898 39 1 5.9733 2.3718 0.8902 40 1 5.7565 4.8415 0.8899 41 1 5.7565 4.8415 -0.8900 42 1 8.0128 3.8141 -0.8908 43 1 8.0135 3.8138 0.8892 44 1 8.0662 7.9734 -0.1155 45 1 9.2140 8.8337 0.9429 46 1 8.9110 10.1264 -1.1171 47 1 9.2945 8.6967 -2.1067 48 1 11.1860 10.0263 -0.1134 49 1 11.2599 10.2082 -1.8822 50 1 14.4840 5.6148 -1.3437 51 1 11.9445 6.3695 -0.1189 52 1 11.7435 7.7873 0.9404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194739953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:10 Heat of formation + Delta-G solvation = -134.594995 kcal Electronic energy + Delta-G solvation = -25650.704804 eV Core-core repulsion = 22034.240312 eV Total energy + Delta-G solvation = -3616.464492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93424 -37.70568 -37.09353 -35.77939 -34.68826 -33.34797 -31.91590 -31.49598 -29.75883 -28.06985 -25.24502 -24.95964 -23.98681 -21.90243 -21.78560 -21.34731 -20.99962 -20.44591 -18.83574 -17.37881 -16.61011 -16.33666 -16.14709 -16.03744 -15.15317 -14.59958 -14.42442 -14.09954 -14.04150 -13.94904 -13.59795 -13.47186 -13.18793 -12.82569 -12.60329 -12.47160 -12.42306 -12.26984 -11.96458 -11.82370 -11.68061 -11.35073 -11.27357 -11.11792 -11.00002 -10.90839 -10.88748 -10.73688 -10.65542 -10.48323 -10.38478 -10.23770 -10.12984 -9.89500 -9.72229 -9.11887 -8.98685 -8.44756 -7.80267 -6.00515 -4.09494 2.75294 3.30469 3.38629 3.41731 3.54319 4.22158 4.41896 4.52433 4.52737 4.66970 4.72486 4.87176 4.94845 4.95932 5.17842 5.21789 5.29571 5.30631 5.38457 5.46711 5.48494 5.50907 5.54048 5.57099 5.57634 5.70303 5.73182 5.73726 5.74116 5.76695 5.89132 5.95330 6.01544 6.07873 6.12816 6.14469 6.25367 6.34829 6.56186 6.65937 6.76633 6.89760 6.97868 7.16782 7.26626 7.64682 7.86028 7.99918 8.23340 8.37705 8.93968 9.04361 9.56323 11.04842 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.001909 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.676734 B =14660.582478 C =15409.834017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.086 3.914 9 O -0.380 6.380 10 C 0.639 3.361 11 O -0.569 6.569 12 N -0.587 5.587 13 C 0.114 3.886 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.038 3.962 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.126 3.874 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.263 0.737 51 H 0.124 0.876 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.227 -6.604 3.289 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.156 4.156 8 C 0.011 3.989 9 O -0.295 6.295 10 C 0.393 3.607 11 O -0.458 6.458 12 N -0.327 5.327 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.149 4.149 16 C 0.019 3.981 17 H 0.048 0.952 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.007 3.993 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.142 0.858 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.958 -7.144 3.280 24.266 hybrid contribution 1.061 0.083 0.028 1.065 sum -21.897 -7.061 3.308 23.243 Atomic orbital electron populations 1.21783 0.96013 1.01515 1.01775 1.21549 0.95765 0.97093 1.01991 1.21635 0.95550 0.96628 1.02037 1.21625 0.95213 0.96907 1.02173 1.21576 0.94938 0.96769 1.02256 1.21504 0.95568 0.95751 1.02679 1.21571 0.92978 0.97522 1.03484 1.22837 0.93668 0.79873 1.02504 1.86169 1.23551 1.31932 1.87822 1.18169 0.80346 0.84940 0.77251 1.90989 1.59355 1.39382 1.56082 1.47539 1.09205 1.01606 1.74315 1.21594 0.93671 0.87011 0.98622 1.21961 0.98684 0.98340 0.98253 1.21633 0.92590 1.00015 1.00627 1.19012 0.94249 0.90337 0.94499 0.95182 1.21114 0.90030 0.93385 1.51309 0.92154 1.25078 0.99170 0.95090 0.94782 1.69902 1.33867 0.99093 1.48913 0.86516 0.85262 0.78473 0.77646 1.19745 1.20962 1.21013 1.22399 0.72740 1.05330 0.98864 0.92789 0.92884 0.92798 0.92082 0.92101 0.92073 0.92044 0.91954 0.91980 0.91885 0.91849 0.91524 0.91593 0.90995 0.90929 0.91526 0.91665 0.90428 0.92111 0.92120 0.92162 0.93090 0.92934 0.92655 0.85798 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.82 5.21 -26.73 -0.14 -0.95 16 5 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 6 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 7 C -0.12 -1.22 5.59 -26.73 -0.15 -1.37 16 8 C 0.09 1.24 5.47 37.16 0.20 1.45 16 9 O -0.38 -6.76 8.86 -40.32 -0.36 -7.12 16 10 C 0.64 14.02 8.43 54.05 0.46 14.47 16 11 O -0.57 -14.51 15.55 -19.28 -0.30 -14.81 16 12 N -0.59 -12.56 2.97 -178.58 -0.53 -13.09 16 13 C 0.11 1.94 6.45 -3.71 -0.02 1.92 16 14 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 15 C -0.11 -2.23 5.11 -26.68 -0.14 -2.36 16 16 C 0.04 0.95 2.25 -91.66 -0.21 0.75 16 17 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.76 11.40 55.43 0.63 -25.13 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.13 3.10 5.40 -3.73 -0.02 3.08 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.08 1.18 6.93 -51.93 -0.36 0.82 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.12 3.56 5.13 -51.93 -0.27 3.29 16 52 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -30.88 408.49 -10.51 -41.39 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -10.31 Total: -1.02 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.78 Total: -2.58 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.10 Total: -38.22 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.66 Total: -21.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.88 -10.51 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194739953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.208 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds