Wall clock time and date at job start Fri Apr 10 2020 22:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46640 * 2 1 4 4 C 1.53009 * 109.46842 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46640 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46867 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47221 * 180.02562 * 7 6 5 9 9 O 1.45199 * 109.47352 * 180.02562 * 8 7 6 10 10 C 1.34639 * 117.00312 * 179.97438 * 9 8 7 11 11 O 1.21512 * 119.99628 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00349 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.62692 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77663 * 233.59122 * 13 12 10 15 15 C 1.53046 * 109.31028 * 305.36644 * 14 13 12 16 16 C 1.53046 * 109.53579 * 61.36644 * 15 14 13 17 17 H 1.09003 * 109.49871 * 58.61696 * 16 15 14 18 18 C 1.50700 * 109.49417 * 178.68258 * 16 15 14 19 19 H 1.08000 * 120.00079 * 359.97438 * 18 16 15 20 20 C 1.37880 * 119.99902 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99723 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00135 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47338 * 120.00002 * 22 20 18 25 25 H 1.48500 * 109.47059 * 240.00248 * 22 20 18 26 26 C 1.46919 * 120.63129 * 180.02562 * 12 10 9 27 27 H 1.08994 * 109.47159 * 60.00091 * 1 2 3 28 28 H 1.09002 * 109.46661 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46991 * 299.99686 * 1 2 3 30 30 H 1.08999 * 109.46991 * 240.00314 * 2 1 3 31 31 H 1.09003 * 109.46976 * 119.99686 * 2 1 3 32 32 H 1.08999 * 109.47173 * 60.00425 * 3 2 1 33 33 H 1.08994 * 109.47271 * 299.99841 * 3 2 1 34 34 H 1.08999 * 109.46857 * 60.00271 * 4 3 2 35 35 H 1.08994 * 109.47090 * 299.99991 * 4 3 2 36 36 H 1.08999 * 109.47173 * 60.00465 * 5 4 3 37 37 H 1.09003 * 109.47180 * 299.99601 * 5 4 3 38 38 H 1.08998 * 109.47467 * 60.00547 * 6 5 4 39 39 H 1.08995 * 109.47606 * 299.99621 * 6 5 4 40 40 H 1.08991 * 109.47302 * 60.00062 * 7 6 5 41 41 H 1.09003 * 109.47034 * 299.99611 * 7 6 5 42 42 H 1.08998 * 109.47419 * 59.99268 * 8 7 6 43 43 H 1.09008 * 109.46707 * 299.99993 * 8 7 6 44 44 H 1.09000 * 109.58699 * 353.37880 * 13 12 10 45 45 H 1.08998 * 109.58257 * 113.80833 * 13 12 10 46 46 H 1.09001 * 109.49998 * 185.42005 * 14 13 12 47 47 H 1.08998 * 109.50010 * 65.31705 * 14 13 12 48 48 H 1.08993 * 109.46296 * 301.34732 * 15 14 13 49 49 H 1.09000 * 109.45696 * 181.38288 * 15 14 13 50 50 H 0.97003 * 119.99618 * 179.97438 * 21 20 18 51 51 H 1.09002 * 109.59216 * 6.61793 * 26 12 10 52 52 H 1.09004 * 109.70105 * 246.26484 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1198 4.3277 0.0000 8 6 7.6498 4.3278 -0.0006 9 8 8.1337 5.6968 0.0000 10 6 9.4685 5.8733 0.0000 11 8 10.2087 4.9096 0.0001 12 7 9.9836 7.1187 0.0011 13 6 9.1014 8.2936 0.0028 14 6 9.4932 9.2061 -1.1637 15 6 10.9838 9.5392 -1.0672 16 6 11.8036 8.2505 -1.1655 17 1 11.5836 7.7504 -2.1087 18 6 13.2722 8.5827 -1.1028 19 1 13.5896 9.6102 -1.0033 20 6 14.2105 7.5749 -1.1726 21 7 13.8239 6.3238 -1.2943 22 14 16.0309 7.9866 -1.0956 23 1 16.2009 9.4557 -0.9608 24 1 16.6430 7.3075 0.0746 25 1 16.6961 7.5241 -2.3401 26 6 11.4379 7.3273 0.0007 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9336 0.9287 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 3.7162 3.3994 0.8896 37 1 3.7169 3.3984 -0.8905 38 1 5.9732 2.3710 -0.8898 39 1 5.9733 2.3718 0.8902 40 1 5.7565 4.8415 0.8899 41 1 5.7565 4.8415 -0.8900 42 1 8.0128 3.8141 -0.8908 43 1 8.0135 3.8138 0.8892 44 1 8.0662 7.9734 -0.1155 45 1 9.2140 8.8337 0.9429 46 1 8.9110 10.1264 -1.1171 47 1 9.2945 8.6967 -2.1067 48 1 11.1860 10.0263 -0.1134 49 1 11.2599 10.2082 -1.8822 50 1 14.4840 5.6148 -1.3437 51 1 11.9445 6.3695 -0.1189 52 1 11.7435 7.7873 0.9404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194739953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:09 Heat of formation + Delta-G solvation = -149.381219 kcal Electronic energy + Delta-G solvation = -25651.345983 eV Core-core repulsion = 22034.240312 eV Total energy + Delta-G solvation = -3617.105671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57984 -39.22775 -37.89239 -37.22150 -35.55942 -35.22088 -33.54519 -32.33495 -31.55980 -28.86646 -27.12357 -26.41613 -25.02311 -23.49290 -22.66525 -22.25727 -21.78516 -21.61041 -20.52034 -19.06222 -18.19330 -17.88863 -17.75324 -16.89804 -16.54556 -16.02424 -15.62750 -15.35504 -15.08089 -15.04569 -14.79975 -14.57565 -14.44027 -14.23095 -14.15294 -13.67322 -13.53626 -13.29150 -13.08541 -12.90760 -12.76612 -12.68886 -12.46120 -12.30837 -12.21213 -12.03855 -12.00951 -11.90346 -11.73167 -11.66722 -11.55166 -11.51269 -11.39191 -11.29822 -11.21223 -11.01136 -10.88301 -10.54163 -9.55189 -8.11529 -6.28696 1.20173 1.42002 1.43044 1.55082 1.81403 2.42277 2.95993 3.18256 3.74568 3.87997 3.97773 4.06125 4.09483 4.16148 4.20829 4.26608 4.27541 4.29003 4.39361 4.53504 4.54205 4.58485 4.70636 4.75362 4.80041 4.82539 4.83922 4.86050 4.89027 5.00712 5.06681 5.08512 5.09685 5.14579 5.19682 5.23971 5.26464 5.28387 5.32920 5.33416 5.41853 5.46284 5.53268 5.54140 5.57061 5.60663 5.87030 5.97668 6.31078 6.51249 6.84413 7.33539 7.42179 8.92482 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.001909 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.676734 B =14660.582478 C =15409.834017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.105 4.105 8 C 0.078 3.922 9 O -0.366 6.366 10 C 0.636 3.364 11 O -0.616 6.616 12 N -0.591 5.591 13 C 0.110 3.890 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.036 3.964 17 H -0.013 1.013 18 C -0.533 4.533 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.259 1.259 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.138 3.862 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.260 0.740 51 H 0.080 0.920 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.058 -4.941 3.885 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.142 4.142 8 C 0.004 3.996 9 O -0.280 6.280 10 C 0.391 3.609 11 O -0.508 6.508 12 N -0.330 5.330 13 C -0.012 4.012 14 C -0.164 4.164 15 C -0.143 4.143 16 C 0.017 3.983 17 H 0.006 0.994 18 C -0.571 4.571 19 H 0.084 0.916 20 C -0.191 4.191 21 N -0.556 5.556 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.018 3.982 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.840 -5.443 3.876 25.723 hybrid contribution 1.570 -0.469 -0.169 1.647 sum -23.270 -5.912 3.707 24.294 Atomic orbital electron populations 1.21785 0.95607 1.01810 1.01897 1.21557 0.96154 0.96914 1.01891 1.21609 0.95066 0.96810 1.02126 1.21604 0.95617 0.96533 1.02035 1.21530 0.93634 0.97189 1.02672 1.21498 0.96586 0.94404 1.02699 1.21558 0.89404 0.98977 1.04294 1.23223 0.96319 0.78189 1.01899 1.86181 1.20710 1.33936 1.87184 1.18329 0.81385 0.84559 0.76645 1.90955 1.60812 1.40992 1.58041 1.47516 1.08621 1.03009 1.73856 1.21950 0.93868 0.85476 0.99876 1.21922 0.96709 1.00169 0.97562 1.21529 0.94194 0.97217 1.01332 1.18960 0.94466 0.92531 0.92386 0.99444 1.21536 0.91478 0.93567 1.50530 0.91572 1.25926 1.03760 0.94852 0.94520 1.70096 1.35061 1.00132 1.50278 0.85472 0.79766 0.78846 0.77382 1.18252 1.20868 1.20982 1.21874 0.74790 1.02914 0.98658 0.92706 0.92545 0.92633 0.92255 0.92161 0.91894 0.92007 0.92220 0.92047 0.91330 0.91549 0.91765 0.91466 0.89909 0.90311 0.92624 0.92005 0.88057 0.89815 0.87500 0.93363 0.91972 0.92601 0.93081 0.90214 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.36 5.93 30.59 0.18 -1.18 16 3 C -0.12 -1.30 5.21 30.60 0.16 -1.14 16 4 C -0.12 -1.45 5.21 30.60 0.16 -1.29 16 5 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 6 C -0.11 -1.78 5.21 30.60 0.16 -1.62 16 7 C -0.10 -1.99 5.59 30.60 0.17 -1.82 16 8 C 0.08 2.23 5.47 71.98 0.39 2.63 16 9 O -0.37 -12.78 8.86 -55.48 -0.49 -13.27 16 10 C 0.64 28.35 8.43 129.79 1.09 29.44 16 11 O -0.62 -32.84 15.55 19.80 0.31 -32.53 16 12 N -0.59 -25.26 2.97 -949.31 -2.82 -28.08 16 13 C 0.11 3.42 6.45 86.36 0.56 3.98 16 14 C -0.13 -3.85 6.08 30.67 0.19 -3.67 16 15 C -0.11 -4.05 5.11 30.63 0.16 -3.89 16 16 C 0.04 1.82 2.25 -11.47 -0.03 1.80 16 17 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 18 C -0.53 -29.18 8.56 25.60 0.22 -28.96 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.01 0.49 5.30 84.66 0.45 0.94 16 21 N -0.92 -55.92 11.40 21.45 0.24 -55.67 16 22 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 C 0.14 7.02 5.40 86.35 0.47 7.49 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.10 2.72 6.93 -2.39 -0.02 2.70 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 51 H 0.08 4.82 5.13 -2.39 -0.01 4.81 16 52 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -70.02 408.49 5.30 -64.72 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.83 Total: 18.02 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.20 Total: 0.67 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.58 Total: -83.75 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.18 Total: -45.81 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.02 5.30 -64.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194739953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.664 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds