Wall clock time and date at job start Fri Apr 10 2020 22:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47452 * 180.02562 * 7 6 5 9 9 O 1.45194 * 109.47460 * 180.02562 * 8 7 6 10 10 C 1.34637 * 117.00385 * 180.02562 * 9 8 7 11 11 O 1.21513 * 119.99463 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00266 * 179.97438 * 10 9 8 13 13 C 1.46930 * 120.63298 * 359.97438 * 12 10 9 14 14 C 1.53187 * 108.77493 * 126.36597 * 13 12 10 15 15 C 1.53044 * 109.31420 * 54.64095 * 14 13 12 16 16 C 1.53044 * 109.53635 * 298.63277 * 15 14 13 17 17 H 1.08994 * 109.49590 * 301.38271 * 16 15 14 18 18 C 1.50692 * 109.49805 * 181.31281 * 16 15 14 19 19 H 1.08000 * 120.00578 * 359.97438 * 18 16 15 20 20 C 1.37882 * 120.00157 * 179.97438 * 18 16 15 21 21 N 1.31518 * 119.99902 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00100 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46823 * 60.00471 * 22 20 18 24 24 H 1.48502 * 109.46973 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47475 * 300.00313 * 22 20 18 26 26 C 1.46923 * 120.63183 * 179.71827 * 12 10 9 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 31 31 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 32 32 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 33 33 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 36 36 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 37 37 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 38 38 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 39 39 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 40 40 H 1.09002 * 109.47153 * 300.00216 * 7 6 5 41 41 H 1.09001 * 109.47289 * 60.00300 * 7 6 5 42 42 H 1.09002 * 109.46935 * 300.00125 * 8 7 6 43 43 H 1.09001 * 109.46812 * 59.99783 * 8 7 6 44 44 H 1.08996 * 109.58754 * 246.15847 * 13 12 10 45 45 H 1.09008 * 109.58102 * 6.44151 * 13 12 10 46 46 H 1.09004 * 109.49542 * 174.58952 * 14 13 12 47 47 H 1.08999 * 109.50358 * 294.68645 * 14 13 12 48 48 H 1.09004 * 109.45841 * 58.65043 * 15 14 13 49 49 H 1.08994 * 109.46739 * 178.62538 * 15 14 13 50 50 H 0.96991 * 120.00253 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.58768 * 353.41576 * 26 12 10 52 52 H 1.09002 * 109.58715 * 113.84345 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6098 2.8851 -0.0013 7 6 6.1198 4.3276 -0.0013 8 6 7.6499 4.3277 -0.0032 9 8 8.1338 5.6966 -0.0026 10 6 9.4686 5.8731 -0.0047 11 8 10.2088 4.9095 -0.0065 12 7 9.9837 7.1185 -0.0048 13 6 9.1015 8.2935 -0.0032 14 6 9.4947 9.2036 1.1646 15 6 10.9852 9.5370 1.0671 16 6 11.8051 8.2482 1.1619 17 1 11.5862 7.7462 2.1043 18 6 13.2735 8.5804 1.0981 19 1 13.5910 9.6080 0.9994 20 6 14.2120 7.5725 1.1659 21 7 13.8256 6.3211 1.2856 22 14 16.0323 7.9843 1.0861 23 1 16.3868 8.8810 2.2155 24 1 16.8273 6.7335 1.1795 25 1 16.3298 8.6658 -0.1992 26 6 11.4380 7.3271 -0.0008 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 3.7162 3.3994 -0.8895 37 1 3.7170 3.3984 0.8904 38 1 5.9740 2.3706 0.8880 39 1 5.9725 2.3720 -0.8920 40 1 5.7557 4.8417 -0.8908 41 1 5.7573 4.8412 0.8892 42 1 8.0143 3.8135 0.8861 43 1 8.0121 3.8142 -0.8939 44 1 9.2129 8.8354 -0.9424 45 1 8.0662 7.9729 0.1131 46 1 8.9124 10.1241 1.1205 47 1 9.2971 8.6925 2.1068 48 1 11.1863 10.0260 0.1139 49 1 11.2623 10.2042 1.8831 50 1 14.4857 5.6121 1.3329 51 1 11.9442 6.3693 0.1197 52 1 11.7435 7.7887 -0.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194739954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:14 Heat of formation + Delta-G solvation = -134.520360 kcal Electronic energy + Delta-G solvation = -25651.743368 eV Core-core repulsion = 22035.282112 eV Total energy + Delta-G solvation = -3616.461256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93559 -37.71239 -37.09606 -35.77986 -34.68825 -33.35188 -31.91504 -31.49503 -29.76922 -28.06970 -25.24374 -24.95941 -23.98922 -21.90303 -21.78377 -21.34726 -20.99912 -20.44969 -18.82961 -17.37885 -16.60989 -16.33488 -16.14570 -16.03612 -15.15262 -14.60364 -14.42501 -14.09958 -14.04046 -13.94662 -13.60168 -13.47291 -13.18862 -12.82762 -12.59687 -12.47169 -12.42380 -12.26986 -11.95984 -11.82251 -11.68024 -11.35078 -11.27321 -11.11778 -10.97238 -10.91106 -10.88787 -10.73599 -10.65498 -10.51546 -10.39173 -10.23468 -10.12892 -9.89372 -9.72235 -9.11231 -9.00158 -8.43929 -7.80380 -6.00041 -4.09304 2.75342 3.32663 3.38324 3.39666 3.54400 4.22201 4.42023 4.52494 4.52730 4.67009 4.72486 4.87217 4.94871 4.95942 5.17875 5.21811 5.29751 5.30672 5.38475 5.46706 5.48519 5.50903 5.54084 5.57101 5.57674 5.70320 5.73190 5.73748 5.74127 5.76691 5.89159 5.95343 6.01573 6.08014 6.12830 6.14497 6.25303 6.34953 6.56702 6.66015 6.76685 6.89971 6.98074 7.16645 7.27116 7.64686 7.86310 8.00249 8.23494 8.37888 8.93642 9.04468 9.56389 11.05233 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.028634 B = 0.001910 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.635399 B =14659.686551 C =15408.962829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.086 3.914 9 O -0.380 6.380 10 C 0.639 3.361 11 O -0.569 6.569 12 N -0.587 5.587 13 C 0.114 3.886 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.039 3.961 17 H 0.030 0.970 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.126 3.874 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.265 0.735 51 H 0.125 0.875 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.209 -6.629 -3.257 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.156 4.156 8 C 0.011 3.989 9 O -0.295 6.295 10 C 0.393 3.607 11 O -0.458 6.458 12 N -0.327 5.327 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.149 4.149 16 C 0.019 3.981 17 H 0.048 0.952 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.007 3.993 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.142 0.858 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.939 -7.180 -3.251 24.255 hybrid contribution 1.059 0.113 -0.031 1.066 sum -21.880 -7.067 -3.281 23.226 Atomic orbital electron populations 1.21783 0.96012 1.01516 1.01775 1.21549 0.95764 0.97093 1.01992 1.21633 0.95550 0.96628 1.02038 1.21624 0.95212 0.96906 1.02174 1.21573 0.94940 0.96769 1.02257 1.21502 0.95567 0.95753 1.02679 1.21572 0.92978 0.97520 1.03484 1.22838 0.93667 0.79874 1.02503 1.86167 1.23554 1.31933 1.87822 1.18166 0.80346 0.84937 0.77252 1.90989 1.59357 1.39377 1.56084 1.47545 1.09210 1.01607 1.74311 1.21592 0.93671 0.87021 0.98620 1.21958 0.98680 0.98354 0.98238 1.21633 0.92588 1.00023 1.00624 1.18935 0.94222 0.90359 0.94549 0.95222 1.21033 0.90031 0.93319 1.51601 0.92257 1.25074 0.99158 0.95084 0.94756 1.69874 1.34108 0.99072 1.48733 0.86624 0.84957 0.77623 0.78603 1.20262 1.21264 1.20208 1.22337 0.72740 1.05355 0.98896 0.92803 0.92885 0.92784 0.92103 0.92081 0.92044 0.92072 0.91953 0.91981 0.91892 0.91846 0.91525 0.91593 0.91002 0.90923 0.91535 0.91655 0.92124 0.90432 0.92118 0.92162 0.93090 0.92928 0.92528 0.85753 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.82 5.21 -26.73 -0.14 -0.95 16 5 C -0.12 -0.85 5.21 -26.74 -0.14 -0.99 16 6 C -0.12 -1.00 5.21 -26.74 -0.14 -1.14 16 7 C -0.12 -1.22 5.59 -26.73 -0.15 -1.37 16 8 C 0.09 1.24 5.47 37.16 0.20 1.45 16 9 O -0.38 -6.76 8.86 -40.32 -0.36 -7.12 16 10 C 0.64 14.02 8.43 54.05 0.46 14.48 16 11 O -0.57 -14.51 15.55 -19.28 -0.30 -14.81 16 12 N -0.59 -12.57 2.98 -178.80 -0.53 -13.10 16 13 C 0.11 1.94 6.45 -3.71 -0.02 1.92 16 14 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 15 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 16 C 0.04 0.96 2.24 -91.85 -0.21 0.76 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 21 N -0.88 -25.76 11.39 55.43 0.63 -25.13 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.13 3.10 5.38 -3.91 -0.02 3.08 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.18 6.93 -51.92 -0.36 0.82 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.12 3.57 5.12 -51.93 -0.27 3.30 16 52 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 408.45 15.07 6.16 6.16 Total: -1.00 -30.81 408.45 -10.51 -41.32 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -10.31 Total: -0.94 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.78 Total: -2.59 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.10 Total: -38.23 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.66 Total: -21.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.81 -10.51 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194739954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.195 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds