Wall clock time and date at job start Fri Apr 10 2020 22:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47452 * 180.02562 * 7 6 5 9 9 O 1.45194 * 109.47460 * 180.02562 * 8 7 6 10 10 C 1.34637 * 117.00385 * 180.02562 * 9 8 7 11 11 O 1.21513 * 119.99463 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00266 * 179.97438 * 10 9 8 13 13 C 1.46930 * 120.63298 * 359.97438 * 12 10 9 14 14 C 1.53187 * 108.77493 * 126.36597 * 13 12 10 15 15 C 1.53044 * 109.31420 * 54.64095 * 14 13 12 16 16 C 1.53044 * 109.53635 * 298.63277 * 15 14 13 17 17 H 1.08994 * 109.49590 * 301.38271 * 16 15 14 18 18 C 1.50692 * 109.49805 * 181.31281 * 16 15 14 19 19 H 1.08000 * 120.00578 * 359.97438 * 18 16 15 20 20 C 1.37882 * 120.00157 * 179.97438 * 18 16 15 21 21 N 1.31518 * 119.99902 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00100 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46823 * 60.00471 * 22 20 18 24 24 H 1.48502 * 109.46973 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47475 * 300.00313 * 22 20 18 26 26 C 1.46923 * 120.63183 * 179.71827 * 12 10 9 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 31 31 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 32 32 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 33 33 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 36 36 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 37 37 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 38 38 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 39 39 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 40 40 H 1.09002 * 109.47153 * 300.00216 * 7 6 5 41 41 H 1.09001 * 109.47289 * 60.00300 * 7 6 5 42 42 H 1.09002 * 109.46935 * 300.00125 * 8 7 6 43 43 H 1.09001 * 109.46812 * 59.99783 * 8 7 6 44 44 H 1.08996 * 109.58754 * 246.15847 * 13 12 10 45 45 H 1.09008 * 109.58102 * 6.44151 * 13 12 10 46 46 H 1.09004 * 109.49542 * 174.58952 * 14 13 12 47 47 H 1.08999 * 109.50358 * 294.68645 * 14 13 12 48 48 H 1.09004 * 109.45841 * 58.65043 * 15 14 13 49 49 H 1.08994 * 109.46739 * 178.62538 * 15 14 13 50 50 H 0.96991 * 120.00253 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.58768 * 353.41576 * 26 12 10 52 52 H 1.09002 * 109.58715 * 113.84345 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6098 2.8851 -0.0013 7 6 6.1198 4.3276 -0.0013 8 6 7.6499 4.3277 -0.0032 9 8 8.1338 5.6966 -0.0026 10 6 9.4686 5.8731 -0.0047 11 8 10.2088 4.9095 -0.0065 12 7 9.9837 7.1185 -0.0048 13 6 9.1015 8.2935 -0.0032 14 6 9.4947 9.2036 1.1646 15 6 10.9852 9.5370 1.0671 16 6 11.8051 8.2482 1.1619 17 1 11.5862 7.7462 2.1043 18 6 13.2735 8.5804 1.0981 19 1 13.5910 9.6080 0.9994 20 6 14.2120 7.5725 1.1659 21 7 13.8256 6.3211 1.2856 22 14 16.0323 7.9843 1.0861 23 1 16.3868 8.8810 2.2155 24 1 16.8273 6.7335 1.1795 25 1 16.3298 8.6658 -0.1992 26 6 11.4380 7.3271 -0.0008 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 3.7162 3.3994 -0.8895 37 1 3.7170 3.3984 0.8904 38 1 5.9740 2.3706 0.8880 39 1 5.9725 2.3720 -0.8920 40 1 5.7557 4.8417 -0.8908 41 1 5.7573 4.8412 0.8892 42 1 8.0143 3.8135 0.8861 43 1 8.0121 3.8142 -0.8939 44 1 9.2129 8.8354 -0.9424 45 1 8.0662 7.9729 0.1131 46 1 8.9124 10.1241 1.1205 47 1 9.2971 8.6925 2.1068 48 1 11.1863 10.0260 0.1139 49 1 11.2623 10.2042 1.8831 50 1 14.4857 5.6121 1.3329 51 1 11.9442 6.3693 0.1197 52 1 11.7435 7.7887 -0.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194739954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:13 Heat of formation + Delta-G solvation = -149.256977 kcal Electronic energy + Delta-G solvation = -25652.382396 eV Core-core repulsion = 22035.282112 eV Total energy + Delta-G solvation = -3617.100283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58222 -39.23798 -37.89378 -37.22192 -35.56069 -35.22237 -33.54498 -32.33469 -31.57086 -28.86649 -27.12077 -26.41851 -25.02515 -23.49118 -22.66659 -22.25995 -21.78551 -21.61042 -20.51594 -19.06246 -18.18949 -17.88788 -17.75281 -16.89786 -16.55020 -16.02421 -15.62639 -15.35913 -15.08125 -15.04643 -14.79948 -14.57525 -14.43683 -14.23326 -14.14858 -13.67138 -13.53435 -13.29149 -13.08573 -12.84398 -12.77233 -12.71522 -12.46291 -12.29929 -12.25620 -12.03821 -12.00921 -11.90715 -11.73164 -11.66815 -11.55145 -11.51485 -11.39157 -11.29775 -11.21309 -11.00552 -10.89596 -10.52468 -9.55426 -8.10981 -6.28500 1.20179 1.43073 1.45048 1.52762 1.81436 2.42648 2.95992 3.18470 3.74565 3.87999 3.97773 4.06115 4.09424 4.15959 4.20842 4.26548 4.27531 4.28981 4.39331 4.53517 4.54196 4.58380 4.70777 4.75577 4.80252 4.82659 4.83912 4.86012 4.89040 5.00726 5.06688 5.08575 5.09680 5.14589 5.19671 5.23995 5.26490 5.28369 5.32904 5.33405 5.41776 5.46236 5.53261 5.53991 5.57070 5.60423 5.87186 5.98065 6.31168 6.51282 6.84205 7.33544 7.42298 8.92570 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.028634 B = 0.001910 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.635399 B =14659.686551 C =15408.962829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.105 4.105 8 C 0.078 3.922 9 O -0.366 6.366 10 C 0.636 3.364 11 O -0.616 6.616 12 N -0.591 5.591 13 C 0.110 3.890 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.036 3.964 17 H -0.013 1.013 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.266 1.266 26 C 0.139 3.861 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.260 0.740 51 H 0.080 0.920 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.029 -4.959 -3.855 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.142 4.142 8 C 0.004 3.996 9 O -0.280 6.280 10 C 0.391 3.609 11 O -0.508 6.508 12 N -0.330 5.330 13 C -0.012 4.012 14 C -0.164 4.164 15 C -0.143 4.143 16 C 0.017 3.983 17 H 0.005 0.995 18 C -0.574 4.574 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.191 1.191 26 C 0.018 3.982 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.810 -5.470 -3.849 25.696 hybrid contribution 1.564 -0.440 0.167 1.633 sum -23.247 -5.910 -3.682 24.267 Atomic orbital electron populations 1.21785 0.95607 1.01811 1.01897 1.21557 0.96153 0.96913 1.01893 1.21608 0.95065 0.96811 1.02126 1.21603 0.95616 0.96531 1.02037 1.21528 0.93636 0.97190 1.02673 1.21495 0.96586 0.94405 1.02701 1.21558 0.89403 0.98976 1.04293 1.23224 0.96318 0.78188 1.01901 1.86180 1.20712 1.33939 1.87183 1.18326 0.81385 0.84555 0.76644 1.90955 1.60813 1.40985 1.58039 1.47521 1.08624 1.03012 1.73854 1.21948 0.93871 0.85491 0.99869 1.21919 0.96710 1.00183 0.97544 1.21529 0.94190 0.97226 1.01330 1.18885 0.94457 0.92549 0.92420 0.99497 1.21475 0.91480 0.93568 1.50834 0.91568 1.25928 1.03774 0.94835 0.94473 1.70076 1.35231 1.00090 1.50124 0.85577 0.79462 0.77286 0.79156 1.19293 1.21599 1.19053 1.21809 0.74796 1.02944 0.98672 0.92640 0.92546 0.92699 0.92164 0.92252 0.92007 0.91894 0.92217 0.92048 0.91340 0.91544 0.91766 0.91464 0.89916 0.90306 0.92635 0.91989 0.89835 0.88055 0.87496 0.93364 0.91973 0.92595 0.93061 0.90156 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.36 5.93 30.59 0.18 -1.18 16 3 C -0.12 -1.30 5.21 30.59 0.16 -1.14 16 4 C -0.12 -1.45 5.21 30.59 0.16 -1.29 16 5 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 6 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 7 C -0.10 -1.99 5.59 30.60 0.17 -1.82 16 8 C 0.08 2.23 5.47 71.98 0.39 2.63 16 9 O -0.37 -12.79 8.86 -55.47 -0.49 -13.28 16 10 C 0.64 28.36 8.43 129.79 1.09 29.46 16 11 O -0.62 -32.84 15.55 19.80 0.31 -32.53 16 12 N -0.59 -25.28 2.98 -950.01 -2.83 -28.11 16 13 C 0.11 3.42 6.45 86.36 0.56 3.98 16 14 C -0.13 -3.86 6.08 30.67 0.19 -3.67 16 15 C -0.11 -4.05 5.11 30.62 0.16 -3.90 16 16 C 0.04 1.84 2.24 -11.59 -0.03 1.81 16 17 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 18 C -0.54 -29.33 8.56 25.60 0.22 -29.11 16 19 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.01 0.53 5.31 84.66 0.45 0.97 16 21 N -0.92 -55.91 11.39 21.45 0.24 -55.67 16 22 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.14 7.03 5.38 86.23 0.46 7.50 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.10 2.72 6.93 -2.38 -0.02 2.70 16 46 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.08 4.86 5.12 -2.39 -0.01 4.84 16 52 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.91 408.45 5.29 -64.62 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.83 Total: 18.28 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.20 Total: 0.59 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.58 Total: -83.78 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.18 Total: -45.81 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.91 5.29 -64.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194739954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.634 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds