Wall clock time and date at job start Fri Apr 10 2020 22:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 O 1.45207 * 109.47307 * 180.02562 * 8 7 6 10 10 C 1.34635 * 116.99784 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00495 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99732 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99755 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.41543 * 324.86214 * 13 12 10 15 15 C 1.52955 * 109.41179 * 84.65009 * 13 12 10 16 16 C 1.53231 * 109.40609 * 183.70258 * 15 13 12 17 17 C 1.51277 * 108.53548 * 305.37317 * 16 15 13 18 18 C 1.37874 * 120.84640 * 231.37196 * 17 16 15 19 19 N 1.31515 * 119.99633 * 179.97438 * 18 17 16 20 20 Si 1.86795 * 120.00474 * 359.96967 * 18 17 16 21 21 H 1.48500 * 109.46714 * 90.00432 * 20 18 17 22 22 H 1.48500 * 109.47294 * 210.00293 * 20 18 17 23 23 H 1.48497 * 109.47186 * 330.00853 * 20 18 17 24 24 C 1.51269 * 118.29781 * 51.34379 * 17 16 15 25 25 C 1.52961 * 109.41208 * 204.99971 * 13 12 10 26 26 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 27 27 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 28 28 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 30 30 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 31 31 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 34 34 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 35 35 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 36 36 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 37 37 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 38 38 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 39 39 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 40 40 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 41 41 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 42 42 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 43 43 H 0.96997 * 119.99973 * 0.02562 * 12 10 9 44 44 H 1.08997 * 109.48617 * 303.68151 * 15 13 12 45 45 H 1.09001 * 109.48574 * 63.72204 * 15 13 12 46 46 H 1.08999 * 109.63003 * 185.66350 * 16 15 13 47 47 H 1.08994 * 109.78531 * 65.17531 * 16 15 13 48 48 H 0.97004 * 120.00135 * 179.97438 * 19 18 17 49 49 H 1.09005 * 109.62296 * 188.94464 * 24 17 16 50 50 H 1.08993 * 109.62474 * 68.36951 * 24 17 16 51 51 H 1.09001 * 109.48442 * 296.27818 * 25 13 12 52 52 H 1.08998 * 109.48187 * 56.31794 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8853 0.0013 7 6 6.1197 4.3277 0.0026 8 6 7.6497 4.3278 0.0032 9 8 8.1337 5.6969 0.0051 10 6 9.4684 5.8733 0.0064 11 8 10.2087 4.9097 0.0055 12 7 9.9835 7.1188 0.0076 13 6 11.4359 7.3107 0.0096 14 1 11.9045 6.5246 0.6015 15 6 11.9594 7.2446 -1.4261 16 6 13.4878 7.3528 -1.4162 17 6 13.8761 8.6092 -0.6683 18 6 14.7426 9.5249 -1.2265 19 7 15.0685 10.6118 -0.5617 20 14 15.4538 9.2217 -2.9270 21 1 14.5585 9.8172 -3.9513 22 1 16.7975 9.8470 -3.0203 23 1 15.5706 7.7600 -3.1613 24 6 13.2889 8.8353 0.7073 25 6 11.7678 8.6733 0.6203 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9336 0.9287 -0.8892 34 1 3.9330 0.9289 0.8907 35 1 3.7168 3.3993 -0.8886 36 1 3.7162 3.3987 0.8913 37 1 5.9732 2.3710 0.8910 38 1 5.9732 2.3719 -0.8889 39 1 5.7564 4.8423 -0.8869 40 1 5.7564 4.8407 0.8930 41 1 8.0127 3.8133 0.8930 42 1 8.0135 3.8147 -0.8870 43 1 9.3926 7.8880 0.0079 44 1 11.6650 6.2970 -1.8772 45 1 11.5404 8.0683 -2.0042 46 1 13.8577 7.4073 -2.4400 47 1 13.9160 6.4832 -0.9179 48 1 15.6784 11.2559 -0.9542 49 1 13.5310 9.8421 1.0477 50 1 13.6959 8.1025 1.4040 51 1 11.3533 9.4632 -0.0062 52 1 11.3375 8.7383 1.6196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194747511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:17 Heat of formation + Delta-G solvation = -146.107168 kcal Electronic energy + Delta-G solvation = -25077.070746 eV Core-core repulsion = 21460.107049 eV Total energy + Delta-G solvation = -3616.963697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19192 -37.77877 -37.17893 -35.99667 -34.82961 -33.78538 -31.92580 -31.41479 -29.69768 -28.28306 -27.16580 -24.69823 -22.68086 -21.92247 -21.56306 -21.41145 -21.12634 -20.62972 -19.63554 -18.19682 -16.79715 -16.50230 -16.26335 -16.04440 -15.30048 -14.84436 -14.45280 -14.41027 -14.17441 -14.13795 -13.58794 -13.33434 -13.07345 -12.77406 -12.65304 -12.54569 -12.36130 -12.13707 -12.06310 -11.83090 -11.70762 -11.47328 -11.41114 -11.23970 -11.05520 -11.00436 -10.85494 -10.82892 -10.77058 -10.73194 -10.41901 -10.34345 -10.05948 -9.99016 -9.64615 -9.06100 -8.91428 -8.48356 -8.38027 -6.12081 -4.02872 2.43635 3.16920 3.27161 3.36063 3.38808 4.14148 4.37997 4.44586 4.49544 4.58163 4.61098 4.75318 4.84094 4.88571 5.06202 5.09856 5.16426 5.19179 5.29607 5.35739 5.36875 5.40527 5.48250 5.59578 5.61938 5.62812 5.65337 5.69276 5.79611 5.83710 5.84542 5.92012 6.00515 6.02922 6.15650 6.37988 6.45609 6.53127 6.68922 6.77987 6.87133 6.93568 7.07611 7.19984 7.42643 7.62869 7.69443 7.74101 7.88698 8.35917 8.69701 8.94180 9.53047 10.97375 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.001620 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.237282 B =17282.712144 C =17593.335623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.119 4.119 8 C 0.087 3.913 9 O -0.378 6.378 10 C 0.642 3.358 11 O -0.576 6.576 12 N -0.702 5.702 13 C 0.170 3.830 14 H 0.081 0.919 15 C -0.116 4.116 16 C -0.013 4.013 17 C -0.491 4.491 18 C 0.077 3.923 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.014 3.986 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.400 0.600 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.032 0.968 47 H 0.020 0.980 48 H 0.264 0.736 49 H 0.062 0.938 50 H 0.007 0.993 51 H 0.057 0.943 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.948 -14.812 1.299 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.157 4.157 8 C 0.012 3.988 9 O -0.293 6.293 10 C 0.394 3.606 11 O -0.465 6.465 12 N -0.359 5.359 13 C 0.068 3.932 14 H 0.099 0.901 15 C -0.155 4.155 16 C -0.051 4.051 17 C -0.510 4.510 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.024 4.024 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.026 0.974 51 H 0.076 0.924 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.510 -15.171 1.300 28.855 hybrid contribution 0.133 0.205 -0.988 1.018 sum -24.377 -14.966 0.313 28.606 Atomic orbital electron populations 1.21785 0.95976 1.01551 1.01794 1.21547 0.95805 0.97046 1.01986 1.21635 0.95486 0.96680 1.02068 1.21621 0.95290 0.96821 1.02172 1.21578 0.94815 0.96867 1.02328 1.21502 0.95718 0.95574 1.02692 1.21591 0.92714 0.97718 1.03686 1.22905 0.93943 0.79314 1.02634 1.86204 1.23057 1.32567 1.87490 1.18255 0.80570 0.85093 0.76676 1.90976 1.59610 1.39852 1.56098 1.45338 1.09383 1.04405 1.76806 1.21139 0.74468 0.99352 0.98215 0.90111 1.21965 0.99580 0.99179 0.94819 1.19715 0.90873 0.97447 0.97048 1.20055 1.26192 1.03422 1.01300 1.24836 0.95689 0.94562 0.97520 1.69831 1.34650 1.10298 1.37930 0.86650 0.78427 0.78606 0.84640 1.20437 1.21615 1.19149 1.19343 0.88115 0.99134 0.95821 1.21973 1.01742 0.93966 0.97610 0.92779 0.92784 0.92857 0.92091 0.92091 0.92044 0.92035 0.91958 0.91963 0.91823 0.91820 0.91538 0.91525 0.90823 0.90836 0.91415 0.91398 0.76602 0.94363 0.92823 0.94997 0.96130 0.92560 0.91907 0.97418 0.92443 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.13 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.65 5.21 -26.73 -0.14 -0.79 16 4 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 5 C -0.12 -0.72 5.21 -26.73 -0.14 -0.86 16 6 C -0.12 -0.82 5.21 -26.74 -0.14 -0.96 16 7 C -0.12 -1.03 5.59 -26.74 -0.15 -1.18 16 8 C 0.09 1.04 5.47 37.16 0.20 1.24 16 9 O -0.38 -5.62 10.27 -40.31 -0.41 -6.04 16 10 C 0.64 11.44 8.71 54.06 0.47 11.91 16 11 O -0.58 -12.06 15.80 -19.28 -0.30 -12.37 16 12 N -0.70 -11.95 5.08 -58.77 -0.30 -12.25 16 13 C 0.17 3.37 2.35 -67.97 -0.16 3.21 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 15 C -0.12 -2.47 5.50 -26.63 -0.15 -2.62 16 16 C -0.01 -0.30 5.59 -27.48 -0.15 -0.45 16 17 C -0.49 -12.80 5.51 -98.92 -0.55 -13.35 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 19 N -0.89 -25.21 12.73 55.43 0.71 -24.51 16 20 Si 0.89 21.09 27.27 -169.99 -4.64 16.45 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.20 6.46 56.52 0.37 -5.83 16 24 C 0.01 0.33 5.97 -27.49 -0.16 0.17 16 25 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 5.74 8.71 -40.82 -0.36 5.38 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 50 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 51 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 52 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 407.79 15.07 6.15 6.15 Total: -1.00 -29.51 407.79 -10.29 -39.81 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -10.26 Total: -1.06 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.23 Total: -6.18 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.41 Total: -36.75 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.72 Total: -18.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.64 Total: 16.45 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.51 -10.29 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194747511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.298 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds