Wall clock time and date at job start Fri Apr 10 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 O 1.45207 * 109.47307 * 180.02562 * 8 7 6 10 10 C 1.34635 * 116.99784 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00495 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99732 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99755 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.41543 * 324.86214 * 13 12 10 15 15 C 1.52955 * 109.41179 * 84.65009 * 13 12 10 16 16 C 1.53231 * 109.40609 * 183.70258 * 15 13 12 17 17 C 1.51277 * 108.53548 * 305.37317 * 16 15 13 18 18 C 1.37874 * 120.84640 * 231.37196 * 17 16 15 19 19 N 1.31515 * 119.99633 * 179.97438 * 18 17 16 20 20 Si 1.86795 * 120.00474 * 359.96967 * 18 17 16 21 21 H 1.48500 * 109.46714 * 90.00432 * 20 18 17 22 22 H 1.48500 * 109.47294 * 210.00293 * 20 18 17 23 23 H 1.48497 * 109.47186 * 330.00853 * 20 18 17 24 24 C 1.51269 * 118.29781 * 51.34379 * 17 16 15 25 25 C 1.52961 * 109.41208 * 204.99971 * 13 12 10 26 26 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 27 27 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 28 28 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 30 30 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 31 31 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 34 34 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 35 35 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 36 36 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 37 37 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 38 38 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 39 39 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 40 40 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 41 41 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 42 42 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 43 43 H 0.96997 * 119.99973 * 0.02562 * 12 10 9 44 44 H 1.08997 * 109.48617 * 303.68151 * 15 13 12 45 45 H 1.09001 * 109.48574 * 63.72204 * 15 13 12 46 46 H 1.08999 * 109.63003 * 185.66350 * 16 15 13 47 47 H 1.08994 * 109.78531 * 65.17531 * 16 15 13 48 48 H 0.97004 * 120.00135 * 179.97438 * 19 18 17 49 49 H 1.09005 * 109.62296 * 188.94464 * 24 17 16 50 50 H 1.08993 * 109.62474 * 68.36951 * 24 17 16 51 51 H 1.09001 * 109.48442 * 296.27818 * 25 13 12 52 52 H 1.08998 * 109.48187 * 56.31794 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8853 0.0013 7 6 6.1197 4.3277 0.0026 8 6 7.6497 4.3278 0.0032 9 8 8.1337 5.6969 0.0051 10 6 9.4684 5.8733 0.0064 11 8 10.2087 4.9097 0.0055 12 7 9.9835 7.1188 0.0076 13 6 11.4359 7.3107 0.0096 14 1 11.9045 6.5246 0.6015 15 6 11.9594 7.2446 -1.4261 16 6 13.4878 7.3528 -1.4162 17 6 13.8761 8.6092 -0.6683 18 6 14.7426 9.5249 -1.2265 19 7 15.0685 10.6118 -0.5617 20 14 15.4538 9.2217 -2.9270 21 1 14.5585 9.8172 -3.9513 22 1 16.7975 9.8470 -3.0203 23 1 15.5706 7.7600 -3.1613 24 6 13.2889 8.8353 0.7073 25 6 11.7678 8.6733 0.6203 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9336 0.9287 -0.8892 34 1 3.9330 0.9289 0.8907 35 1 3.7168 3.3993 -0.8886 36 1 3.7162 3.3987 0.8913 37 1 5.9732 2.3710 0.8910 38 1 5.9732 2.3719 -0.8889 39 1 5.7564 4.8423 -0.8869 40 1 5.7564 4.8407 0.8930 41 1 8.0127 3.8133 0.8930 42 1 8.0135 3.8147 -0.8870 43 1 9.3926 7.8880 0.0079 44 1 11.6650 6.2970 -1.8772 45 1 11.5404 8.0683 -2.0042 46 1 13.8577 7.4073 -2.4400 47 1 13.9160 6.4832 -0.9179 48 1 15.6784 11.2559 -0.9542 49 1 13.5310 9.8421 1.0477 50 1 13.6959 8.1025 1.4040 51 1 11.3533 9.4632 -0.0062 52 1 11.3375 8.7383 1.6196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194747511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:16 Heat of formation + Delta-G solvation = -160.809247 kcal Electronic energy + Delta-G solvation = -25077.708276 eV Core-core repulsion = 21460.107049 eV Total energy + Delta-G solvation = -3617.601227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56231 -39.21202 -37.91830 -37.25665 -35.56143 -35.40891 -33.46641 -32.33660 -31.50567 -29.35451 -28.52289 -25.45393 -24.23933 -23.35907 -22.64223 -22.27986 -21.79312 -21.59454 -21.34101 -19.62837 -17.98567 -17.85415 -17.75274 -16.89773 -16.39646 -16.32034 -15.99015 -15.19868 -15.07660 -14.87876 -14.78520 -14.55249 -14.33322 -14.22691 -13.96923 -13.80349 -13.53235 -13.32011 -13.07797 -12.84254 -12.79421 -12.67123 -12.55556 -12.46745 -12.04387 -12.02579 -11.99466 -11.86853 -11.73427 -11.67510 -11.55788 -11.48017 -11.39441 -11.30044 -11.20824 -10.92254 -10.72397 -10.53721 -10.02737 -8.16982 -6.11204 1.15671 1.39340 1.43401 1.51558 1.75638 2.41777 3.07360 3.21746 3.78061 3.88889 3.98042 3.99231 4.06066 4.15204 4.20017 4.27920 4.28541 4.39022 4.45601 4.53231 4.54478 4.69820 4.73335 4.79293 4.83447 4.83590 4.88443 4.94982 4.97861 5.04275 5.05679 5.09626 5.10237 5.14247 5.20766 5.21637 5.23419 5.31206 5.33295 5.41208 5.46862 5.53021 5.53096 5.55831 5.56960 5.65333 5.75892 5.82216 6.34459 6.47433 6.94311 7.33790 7.47225 8.93471 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.001620 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.237282 B =17282.712144 C =17593.335623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.109 4.109 8 C 0.080 3.920 9 O -0.371 6.371 10 C 0.644 3.356 11 O -0.610 6.610 12 N -0.692 5.692 13 C 0.182 3.818 14 H 0.062 0.938 15 C -0.110 4.110 16 C -0.014 4.014 17 C -0.502 4.502 18 C 0.027 3.973 19 N -0.926 5.926 20 Si 0.938 3.062 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.259 1.259 24 C 0.010 3.990 25 C -0.101 4.101 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.416 0.584 44 H 0.041 0.959 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.015 0.985 48 H 0.264 0.736 49 H 0.036 0.964 50 H 0.000 1.000 51 H 0.061 0.939 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.930 -15.575 0.701 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.147 4.147 8 C 0.005 3.995 9 O -0.285 6.285 10 C 0.397 3.603 11 O -0.501 6.501 12 N -0.350 5.350 13 C 0.079 3.921 14 H 0.081 0.919 15 C -0.149 4.149 16 C -0.052 4.052 17 C -0.521 4.521 18 C -0.172 4.172 19 N -0.566 5.566 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.028 4.028 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.253 0.747 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.019 0.981 51 H 0.079 0.921 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.542 -15.935 0.700 30.966 hybrid contribution 0.706 0.378 -0.738 1.088 sum -25.836 -15.557 -0.037 30.158 Atomic orbital electron populations 1.21790 0.95712 1.01799 1.01859 1.21553 0.96071 0.96918 1.01927 1.21615 0.95241 0.96788 1.02049 1.21598 0.95478 0.96551 1.02106 1.21542 0.93983 0.97143 1.02548 1.21486 0.96331 0.94436 1.02862 1.21576 0.90043 0.98908 1.04162 1.23244 0.95966 0.77840 1.02435 1.86229 1.20986 1.34365 1.86911 1.18305 0.81319 0.84632 0.76034 1.90960 1.60699 1.40956 1.57528 1.44973 1.08443 1.05050 1.76535 1.20745 0.76013 0.98330 0.96983 0.91931 1.21848 0.97666 0.99529 0.95819 1.19712 0.92810 0.96044 0.96679 1.20593 1.25594 1.03925 1.02003 1.25538 0.96329 0.94633 1.00666 1.69947 1.35838 1.11349 1.39470 0.85839 0.77738 0.78773 0.81163 1.19695 1.21767 1.18384 1.19297 0.91174 0.97319 0.95055 1.21737 0.98674 0.94289 0.99242 0.92702 0.92735 0.92554 0.92174 0.92138 0.92029 0.92064 0.92062 0.92011 0.91642 0.91567 0.91369 0.91448 0.90395 0.90289 0.91603 0.91744 0.74728 0.94048 0.92236 0.94834 0.96702 0.92694 0.94486 0.98145 0.92055 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.17 5.93 30.60 0.18 -0.99 16 3 C -0.12 -1.12 5.21 30.59 0.16 -0.96 16 4 C -0.12 -1.18 5.21 30.59 0.16 -1.02 16 5 C -0.11 -1.17 5.21 30.59 0.16 -1.01 16 6 C -0.11 -1.37 5.21 30.59 0.16 -1.21 16 7 C -0.11 -1.64 5.59 30.59 0.17 -1.47 16 8 C 0.08 1.76 5.47 71.98 0.39 2.16 16 9 O -0.37 -10.27 10.27 -55.45 -0.57 -10.84 16 10 C 0.64 21.84 8.71 129.79 1.13 22.97 16 11 O -0.61 -24.89 15.80 19.81 0.31 -24.58 16 12 N -0.69 -22.03 5.08 -570.26 -2.90 -24.92 16 13 C 0.18 6.96 2.35 44.96 0.11 7.06 16 14 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.11 -4.48 5.50 30.66 0.17 -4.31 16 16 C -0.01 -0.67 5.59 30.11 0.17 -0.50 16 17 C -0.50 -26.13 5.51 -16.17 -0.09 -26.22 16 18 C 0.03 1.47 5.46 84.65 0.46 1.93 16 19 N -0.93 -53.28 12.73 21.45 0.27 -53.01 16 20 Si 0.94 43.00 27.27 68.60 1.87 44.87 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.26 -11.45 6.46 99.48 0.64 -10.81 16 24 C 0.01 0.47 5.97 30.10 0.18 0.65 16 25 C -0.10 -3.95 5.40 30.66 0.17 -3.78 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.42 10.74 8.71 -92.71 -0.81 9.94 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.03 1.53 4.78 -2.39 -0.01 1.52 16 47 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.04 1.98 7.07 -2.38 -0.02 1.96 16 50 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.37 407.79 3.37 -59.00 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.01 Total: 16.80 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.39 Total: -7.31 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.62 Total: -77.93 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.26 Total: -35.42 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.87 Total: 44.87 kcal Total: -62.37 3.37 -59.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194747511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.810 kcal (2) G-P(sol) polarization free energy of solvation -62.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds