Wall clock time and date at job start Fri Apr 10 2020 22:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47396 * 179.97438 * 8 7 6 10 10 C 1.34629 * 117.00574 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99955 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00524 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00683 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.40916 * 35.14080 * 13 12 10 15 15 C 1.52961 * 109.41766 * 155.00084 * 13 12 10 16 16 C 1.53225 * 109.40409 * 183.70787 * 15 13 12 17 17 C 1.51267 * 108.53493 * 305.37078 * 16 15 13 18 18 C 1.37877 * 120.84998 * 231.32695 * 17 16 15 19 19 N 1.31521 * 120.00126 * 359.97438 * 18 17 16 20 20 Si 1.86801 * 120.00294 * 180.02562 * 18 17 16 21 21 H 1.48507 * 109.47028 * 89.99587 * 20 18 17 22 22 H 1.48498 * 109.47435 * 210.00026 * 20 18 17 23 23 H 1.48500 * 109.47162 * 330.00414 * 20 18 17 24 24 C 1.51269 * 118.30145 * 51.35270 * 17 16 15 25 25 C 1.52962 * 109.41272 * 275.35682 * 13 12 10 26 26 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 28 28 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00008 * 2 1 3 30 30 H 1.09001 * 109.47289 * 119.99924 * 2 1 3 31 31 H 1.09002 * 109.46935 * 59.99874 * 3 2 1 32 32 H 1.09001 * 109.46812 * 300.00216 * 3 2 1 33 33 H 1.09002 * 109.47153 * 60.00008 * 4 3 2 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 3 2 35 35 H 1.09002 * 109.47103 * 59.99753 * 5 4 3 36 36 H 1.08998 * 109.46862 * 300.00565 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 38 38 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 39 39 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 40 40 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 41 41 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 42 42 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 43 43 H 0.97003 * 119.99724 * 0.02562 * 12 10 9 44 44 H 1.09007 * 109.47631 * 303.68440 * 15 13 12 45 45 H 1.08994 * 109.48222 * 63.71303 * 15 13 12 46 46 H 1.09003 * 109.62803 * 65.08538 * 16 15 13 47 47 H 1.08993 * 109.62760 * 185.46390 * 16 15 13 48 48 H 0.96993 * 120.00109 * 179.97438 * 19 18 17 49 49 H 1.08994 * 109.62732 * 68.36493 * 24 17 16 50 50 H 1.09002 * 109.62747 * 188.93794 * 24 17 16 51 51 H 1.09005 * 109.47848 * 296.26880 * 25 13 12 52 52 H 1.08997 * 109.48444 * 56.31396 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 6 6.1201 4.3274 0.0013 8 6 7.6501 4.3274 0.0006 9 8 8.1342 5.6963 0.0013 10 6 9.4689 5.8727 0.0013 11 8 10.2091 4.9091 0.0014 12 7 9.9841 7.1180 0.0014 13 6 11.4364 7.3101 0.0009 14 1 11.9055 6.5242 -0.5912 15 6 11.7690 8.6730 -0.6086 16 6 13.2903 8.8349 -0.6941 17 6 13.8761 8.6078 0.6819 18 6 14.7429 9.5227 1.2411 19 7 15.0706 10.6094 0.5767 20 14 15.4529 9.2181 2.9418 21 1 16.7247 8.4612 2.8190 22 1 15.7134 10.5186 3.6097 23 1 14.4853 8.4322 3.7488 24 6 13.4871 7.3510 1.4285 25 6 11.9586 7.2429 1.4371 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.7171 3.3982 0.8904 36 1 3.7163 3.3993 -0.8895 37 1 5.9734 2.3714 -0.8902 38 1 5.9734 2.3707 0.8898 39 1 5.7568 4.8420 -0.8883 40 1 5.7568 4.8405 0.8916 41 1 8.0138 3.8127 0.8900 42 1 8.0131 3.8144 -0.8900 43 1 9.3932 7.8873 0.0017 44 1 11.3396 8.7385 -1.6085 45 1 11.3538 9.4624 0.0178 46 1 13.6978 8.1025 -1.3910 47 1 13.5327 9.8407 -1.0369 48 1 15.6801 11.2532 0.9702 49 1 13.9129 6.4814 0.9282 50 1 13.8560 7.4047 2.4528 51 1 11.5391 8.0663 2.0152 52 1 11.6638 6.2950 1.8872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194747515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:20 Heat of formation + Delta-G solvation = -145.506690 kcal Electronic energy + Delta-G solvation = -25078.091381 eV Core-core repulsion = 21461.153722 eV Total energy + Delta-G solvation = -3616.937659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.19062 -37.77694 -37.17801 -35.99438 -34.82864 -33.78291 -31.92476 -31.41244 -29.69539 -28.28257 -27.16305 -24.69759 -22.67843 -21.92163 -21.56006 -21.41020 -21.12589 -20.62807 -19.63176 -18.19704 -16.79647 -16.50078 -16.26292 -16.04599 -15.29929 -14.84381 -14.46409 -14.41114 -14.17648 -14.13745 -13.58698 -13.32951 -13.07424 -12.77517 -12.65699 -12.54426 -12.38594 -12.17933 -12.06588 -11.83002 -11.65756 -11.47269 -11.40794 -11.23913 -11.03760 -11.00678 -10.86028 -10.83013 -10.77055 -10.73447 -10.41708 -10.34126 -10.09445 -9.98155 -9.55994 -9.05215 -8.90910 -8.50969 -8.35163 -6.11656 -4.02711 2.43847 3.17133 3.27896 3.36049 3.37325 4.14179 4.37880 4.44596 4.49580 4.58215 4.61137 4.75371 4.84124 4.88608 5.06261 5.09892 5.16159 5.19243 5.29644 5.35789 5.36907 5.40573 5.48299 5.59648 5.61973 5.62842 5.65508 5.69486 5.79719 5.83992 5.85021 5.92050 6.00553 6.02961 6.15922 6.38428 6.46150 6.53442 6.69448 6.78362 6.87811 6.94065 7.09226 7.20989 7.42579 7.63136 7.69277 7.74426 7.88993 8.36184 8.69910 8.94297 9.53098 10.97733 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.043712 B = 0.001620 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.398784 B =17282.990685 C =17593.810536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.119 4.119 8 C 0.087 3.913 9 O -0.379 6.379 10 C 0.642 3.358 11 O -0.576 6.576 12 N -0.702 5.702 13 C 0.169 3.831 14 H 0.081 0.919 15 C -0.114 4.114 16 C 0.014 3.986 17 C -0.489 4.489 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.264 1.264 24 C -0.018 4.018 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.007 0.993 47 H 0.062 0.938 48 H 0.264 0.736 49 H 0.020 0.980 50 H 0.036 0.964 51 H 0.053 0.947 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 -14.808 -1.277 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.157 4.157 8 C 0.012 3.988 9 O -0.293 6.293 10 C 0.394 3.606 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.068 3.932 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.024 4.024 17 C -0.508 4.508 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.189 1.189 24 C -0.057 4.057 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.234 0.766 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.026 0.974 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.503 -15.167 -1.279 28.846 hybrid contribution 0.147 0.194 0.963 0.993 sum -24.356 -14.973 -0.316 28.592 Atomic orbital electron populations 1.21782 0.95976 1.01552 1.01794 1.21548 0.95805 0.97045 1.01987 1.21635 0.95485 0.96681 1.02067 1.21620 0.95290 0.96824 1.02172 1.21576 0.94816 0.96867 1.02329 1.21504 0.95717 0.95574 1.02691 1.21592 0.92714 0.97716 1.03685 1.22904 0.93939 0.79317 1.02631 1.86201 1.23062 1.32571 1.87489 1.18250 0.80568 0.85095 0.76679 1.90977 1.59618 1.39846 1.56115 1.45338 1.09392 1.04404 1.76789 1.21149 0.74459 0.99334 0.98248 0.90122 1.21971 1.01728 0.93971 0.97605 1.19339 0.88121 0.99118 0.95812 1.20056 1.26027 1.03511 1.01228 1.24843 0.95687 0.94560 0.97526 1.69833 1.34596 1.10351 1.37993 0.86671 0.79588 0.77295 0.84877 1.20368 1.21649 1.18948 1.19795 0.91046 0.97362 0.97449 1.21947 0.99606 0.99143 0.94738 0.92779 0.92786 0.92855 0.92092 0.92091 0.92036 0.92044 0.91959 0.91963 0.91823 0.91822 0.91531 0.91529 0.90838 0.90823 0.91400 0.91418 0.76609 0.94346 0.92446 0.97449 0.91947 0.92571 0.96165 0.94513 0.92861 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.13 -0.66 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.66 5.21 -26.73 -0.14 -0.79 16 4 C -0.12 -0.69 5.21 -26.74 -0.14 -0.83 16 5 C -0.12 -0.72 5.21 -26.74 -0.14 -0.86 16 6 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 7 C -0.12 -1.03 5.59 -26.73 -0.15 -1.18 16 8 C 0.09 1.04 5.47 37.16 0.20 1.24 16 9 O -0.38 -5.63 10.27 -40.29 -0.41 -6.05 16 10 C 0.64 11.46 8.71 54.05 0.47 11.93 16 11 O -0.58 -12.08 15.80 -19.28 -0.30 -12.39 16 12 N -0.70 -11.98 5.08 -58.77 -0.30 -12.27 16 13 C 0.17 3.37 2.35 -67.97 -0.16 3.21 16 14 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 15 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 16 C 0.01 0.34 5.96 -27.49 -0.16 0.18 16 17 C -0.49 -12.76 5.51 -98.92 -0.55 -13.31 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 19 N -0.89 -25.23 12.74 55.43 0.71 -24.53 16 20 Si 0.89 21.00 27.53 -169.99 -4.68 16.32 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.08 6.10 56.52 0.34 -5.74 16 24 C -0.02 -0.44 5.59 -27.49 -0.15 -0.59 16 25 C -0.12 -2.46 5.50 -26.63 -0.15 -2.60 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.40 5.75 8.71 -40.82 -0.36 5.40 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.87 4.60 -51.93 -0.24 0.63 16 51 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -29.52 407.52 -10.35 -39.87 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -10.27 Total: -0.85 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.23 Total: -6.24 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.41 Total: -36.80 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.72 Total: -18.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.68 Total: 16.32 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.52 -10.35 -39.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194747515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.636 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds