Wall clock time and date at job start Fri Apr 10 2020 22:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47396 * 179.97438 * 8 7 6 10 10 C 1.34629 * 117.00574 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99955 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00524 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00683 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.40916 * 35.14080 * 13 12 10 15 15 C 1.52961 * 109.41766 * 155.00084 * 13 12 10 16 16 C 1.53225 * 109.40409 * 183.70787 * 15 13 12 17 17 C 1.51267 * 108.53493 * 305.37078 * 16 15 13 18 18 C 1.37877 * 120.84998 * 231.32695 * 17 16 15 19 19 N 1.31521 * 120.00126 * 359.97438 * 18 17 16 20 20 Si 1.86801 * 120.00294 * 180.02562 * 18 17 16 21 21 H 1.48507 * 109.47028 * 89.99587 * 20 18 17 22 22 H 1.48498 * 109.47435 * 210.00026 * 20 18 17 23 23 H 1.48500 * 109.47162 * 330.00414 * 20 18 17 24 24 C 1.51269 * 118.30145 * 51.35270 * 17 16 15 25 25 C 1.52962 * 109.41272 * 275.35682 * 13 12 10 26 26 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 28 28 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00008 * 2 1 3 30 30 H 1.09001 * 109.47289 * 119.99924 * 2 1 3 31 31 H 1.09002 * 109.46935 * 59.99874 * 3 2 1 32 32 H 1.09001 * 109.46812 * 300.00216 * 3 2 1 33 33 H 1.09002 * 109.47153 * 60.00008 * 4 3 2 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 3 2 35 35 H 1.09002 * 109.47103 * 59.99753 * 5 4 3 36 36 H 1.08998 * 109.46862 * 300.00565 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 38 38 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 39 39 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 40 40 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 41 41 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 42 42 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 43 43 H 0.97003 * 119.99724 * 0.02562 * 12 10 9 44 44 H 1.09007 * 109.47631 * 303.68440 * 15 13 12 45 45 H 1.08994 * 109.48222 * 63.71303 * 15 13 12 46 46 H 1.09003 * 109.62803 * 65.08538 * 16 15 13 47 47 H 1.08993 * 109.62760 * 185.46390 * 16 15 13 48 48 H 0.96993 * 120.00109 * 179.97438 * 19 18 17 49 49 H 1.08994 * 109.62732 * 68.36493 * 24 17 16 50 50 H 1.09002 * 109.62747 * 188.93794 * 24 17 16 51 51 H 1.09005 * 109.47848 * 296.26880 * 25 13 12 52 52 H 1.08997 * 109.48444 * 56.31396 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 6 6.1201 4.3274 0.0013 8 6 7.6501 4.3274 0.0006 9 8 8.1342 5.6963 0.0013 10 6 9.4689 5.8727 0.0013 11 8 10.2091 4.9091 0.0014 12 7 9.9841 7.1180 0.0014 13 6 11.4364 7.3101 0.0009 14 1 11.9055 6.5242 -0.5912 15 6 11.7690 8.6730 -0.6086 16 6 13.2903 8.8349 -0.6941 17 6 13.8761 8.6078 0.6819 18 6 14.7429 9.5227 1.2411 19 7 15.0706 10.6094 0.5767 20 14 15.4529 9.2181 2.9418 21 1 16.7247 8.4612 2.8190 22 1 15.7134 10.5186 3.6097 23 1 14.4853 8.4322 3.7488 24 6 13.4871 7.3510 1.4285 25 6 11.9586 7.2429 1.4371 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.7171 3.3982 0.8904 36 1 3.7163 3.3993 -0.8895 37 1 5.9734 2.3714 -0.8902 38 1 5.9734 2.3707 0.8898 39 1 5.7568 4.8420 -0.8883 40 1 5.7568 4.8405 0.8916 41 1 8.0138 3.8127 0.8900 42 1 8.0131 3.8144 -0.8900 43 1 9.3932 7.8873 0.0017 44 1 11.3396 8.7385 -1.6085 45 1 11.3538 9.4624 0.0178 46 1 13.6978 8.1025 -1.3910 47 1 13.5327 9.8407 -1.0369 48 1 15.6801 11.2532 0.9702 49 1 13.9129 6.4814 0.9282 50 1 13.8560 7.4047 2.4528 51 1 11.5391 8.0663 2.0152 52 1 11.6638 6.2950 1.8872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194747515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:19 Heat of formation + Delta-G solvation = -160.171292 kcal Electronic energy + Delta-G solvation = -25078.727285 eV Core-core repulsion = 21461.153722 eV Total energy + Delta-G solvation = -3617.573564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56313 -39.21149 -37.91798 -37.25639 -35.56047 -35.40770 -33.46388 -32.33699 -31.50484 -29.35330 -28.52246 -25.45401 -24.23810 -23.35584 -22.64243 -22.28005 -21.79286 -21.59465 -21.33941 -19.63075 -17.98561 -17.85655 -17.75210 -16.89758 -16.40759 -16.32107 -15.99153 -15.19538 -15.07429 -14.88341 -14.78533 -14.55876 -14.34786 -14.24695 -13.99804 -13.80163 -13.48588 -13.32023 -13.07647 -12.82920 -12.80770 -12.65253 -12.56994 -12.46769 -12.04567 -12.03067 -12.00131 -11.88900 -11.73401 -11.66078 -11.55786 -11.40270 -11.38911 -11.30028 -11.20918 -10.90861 -10.72617 -10.54491 -10.01882 -8.16398 -6.10969 1.15861 1.40362 1.43493 1.51036 1.75607 2.42006 3.06956 3.22006 3.78040 3.88869 3.98012 3.99284 4.06037 4.15827 4.20030 4.27883 4.28524 4.38984 4.45619 4.53239 4.54450 4.70158 4.73338 4.79495 4.83428 4.83655 4.88433 4.95638 4.97940 5.04303 5.05935 5.09605 5.10281 5.14251 5.20955 5.22534 5.24170 5.31208 5.33272 5.41199 5.46857 5.53001 5.53218 5.55976 5.56945 5.65602 5.75990 5.82367 6.34774 6.47381 6.94495 7.33744 7.47405 8.93934 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.043712 B = 0.001620 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.398784 B =17282.990685 C =17593.810536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.109 4.109 8 C 0.080 3.920 9 O -0.371 6.371 10 C 0.644 3.356 11 O -0.610 6.610 12 N -0.692 5.692 13 C 0.182 3.818 14 H 0.062 0.938 15 C -0.101 4.101 16 C 0.010 3.990 17 C -0.501 4.501 18 C 0.027 3.973 19 N -0.927 5.927 20 Si 0.937 3.063 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.252 1.252 24 C -0.020 4.020 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.000 1.000 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.016 0.984 50 H 0.038 0.962 51 H 0.058 0.942 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.929 -15.601 -0.669 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.147 4.147 8 C 0.005 3.995 9 O -0.285 6.285 10 C 0.397 3.603 11 O -0.502 6.502 12 N -0.350 5.350 13 C 0.079 3.921 14 H 0.081 0.919 15 C -0.139 4.139 16 C -0.028 4.028 17 C -0.520 4.520 18 C -0.172 4.172 19 N -0.567 5.567 20 Si 0.764 3.236 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.176 1.176 24 C -0.058 4.058 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.253 0.747 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.056 0.944 51 H 0.076 0.924 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -26.541 -15.961 -0.670 30.978 hybrid contribution 0.722 0.375 0.708 1.079 sum -25.818 -15.586 0.038 30.158 Atomic orbital electron populations 1.21788 0.95710 1.01800 1.01859 1.21554 0.96071 0.96918 1.01928 1.21615 0.95240 0.96789 1.02048 1.21597 0.95477 0.96552 1.02106 1.21540 0.93982 0.97144 1.02549 1.21487 0.96330 0.94433 1.02862 1.21577 0.90038 0.98909 1.04162 1.23244 0.95966 0.77840 1.02433 1.86225 1.20986 1.34374 1.86910 1.18300 0.81320 0.84634 0.76037 1.90960 1.60706 1.40949 1.57541 1.44975 1.08455 1.05052 1.76522 1.20753 0.76003 0.98320 0.96997 0.91930 1.21736 0.98668 0.94293 0.99233 1.19293 0.91176 0.97294 0.95068 1.20594 1.25432 1.04029 1.01919 1.25551 0.96324 0.94621 1.00716 1.69950 1.35797 1.11416 1.39539 0.85855 0.79090 0.77206 0.81442 1.20307 1.21634 1.17603 1.19789 0.92910 0.96013 0.97078 1.21835 0.97775 0.99440 0.95745 0.92728 0.92709 0.92551 0.92140 0.92174 0.92066 0.92029 0.92005 0.92069 0.91643 0.91567 0.91359 0.91455 0.90288 0.90395 0.91750 0.91600 0.74737 0.91940 0.92056 0.98188 0.94538 0.92717 0.96577 0.94376 0.92351 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.17 5.93 30.60 0.18 -0.99 16 3 C -0.12 -1.12 5.21 30.60 0.16 -0.96 16 4 C -0.12 -1.18 5.21 30.59 0.16 -1.02 16 5 C -0.11 -1.18 5.21 30.59 0.16 -1.02 16 6 C -0.11 -1.37 5.21 30.59 0.16 -1.21 16 7 C -0.11 -1.65 5.59 30.59 0.17 -1.48 16 8 C 0.08 1.77 5.47 71.98 0.39 2.16 16 9 O -0.37 -10.29 10.27 -55.38 -0.57 -10.86 16 10 C 0.64 21.87 8.71 129.79 1.13 23.00 16 11 O -0.61 -24.93 15.80 19.79 0.31 -24.61 16 12 N -0.69 -22.08 5.08 -570.27 -2.90 -24.98 16 13 C 0.18 6.97 2.35 44.97 0.11 7.07 16 14 H 0.06 2.67 7.58 -2.38 -0.02 2.65 16 15 C -0.10 -3.95 5.40 30.66 0.17 -3.78 16 16 C 0.01 0.47 5.96 30.10 0.18 0.65 16 17 C -0.50 -26.04 5.51 -16.17 -0.09 -26.13 16 18 C 0.03 1.44 5.46 84.65 0.46 1.90 16 19 N -0.93 -53.38 12.74 21.45 0.27 -53.10 16 20 Si 0.94 42.82 27.53 68.60 1.89 44.71 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.25 -10.86 6.10 99.48 0.61 -10.26 16 24 C -0.02 -0.92 5.59 30.11 0.17 -0.75 16 25 C -0.11 -4.47 5.50 30.66 0.17 -4.30 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.42 10.77 8.71 -92.71 -0.81 9.97 16 44 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.04 1.95 7.08 -2.39 -0.02 1.94 16 48 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.04 1.74 4.60 -2.39 -0.01 1.73 16 51 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 52 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -62.39 407.52 3.35 -59.04 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.05 Total: 17.24 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.39 Total: -7.44 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.62 Total: -78.08 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.26 Total: -35.47 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.89 Total: 44.71 kcal Total: -62.39 3.35 -59.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194747515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.131 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds