Wall clock time and date at job start Fri Apr 10 2020 22:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46926 * 2 1 4 4 C 1.52993 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47016 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46926 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46926 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47016 * 179.97438 * 7 6 5 9 9 O 1.45203 * 109.47239 * 180.02562 * 8 7 6 10 10 C 1.34638 * 116.99915 * 180.02562 * 9 8 7 11 11 O 1.21507 * 120.00209 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99506 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99660 * 175.02163 * 12 10 9 14 14 C 1.50703 * 110.01501 * 62.67204 * 13 12 10 15 15 H 1.07994 * 119.99903 * 237.41770 * 14 13 12 16 16 C 1.37872 * 119.99987 * 57.42102 * 14 13 12 17 17 N 1.31513 * 120.00319 * 354.43595 * 16 14 13 18 18 Si 1.86804 * 120.00155 * 174.43585 * 16 14 13 19 19 H 1.48504 * 109.46956 * 89.99639 * 18 16 14 20 20 H 1.48496 * 109.47304 * 210.00162 * 18 16 14 21 21 H 1.48507 * 109.46631 * 330.00241 * 18 16 14 22 22 C 1.54260 * 110.03535 * 301.22817 * 13 12 10 23 23 C 1.54892 * 104.19723 * 217.10543 * 22 13 12 24 24 C 1.54891 * 102.74711 * 37.94405 * 23 22 13 25 25 C 1.53883 * 110.03011 * 184.06059 * 13 12 10 26 26 H 1.09003 * 109.47091 * 60.00023 * 1 2 3 27 27 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47414 * 299.99980 * 1 2 3 29 29 H 1.09002 * 109.47231 * 240.00264 * 2 1 3 30 30 H 1.08994 * 109.47210 * 120.00289 * 2 1 3 31 31 H 1.09002 * 109.46950 * 60.00092 * 3 2 1 32 32 H 1.09003 * 109.47217 * 299.99900 * 3 2 1 33 33 H 1.09002 * 109.47175 * 60.00243 * 4 3 2 34 34 H 1.08999 * 109.47641 * 300.00449 * 4 3 2 35 35 H 1.09002 * 109.46950 * 60.00106 * 5 4 3 36 36 H 1.08994 * 109.47412 * 300.00178 * 5 4 3 37 37 H 1.09002 * 109.47231 * 60.00264 * 6 5 4 38 38 H 1.09003 * 109.47091 * 299.99977 * 6 5 4 39 39 H 1.09002 * 109.46950 * 60.00092 * 7 6 5 40 40 H 1.08990 * 109.46941 * 300.00140 * 7 6 5 41 41 H 1.08994 * 109.47358 * 60.00000 * 8 7 6 42 42 H 1.09007 * 109.47521 * 300.00137 * 8 7 6 43 43 H 0.97001 * 120.00170 * 355.02148 * 12 10 9 44 44 H 0.97006 * 120.00172 * 185.02275 * 17 16 14 45 45 H 1.09001 * 110.48564 * 335.78386 * 22 13 12 46 46 H 1.08998 * 110.48859 * 98.42994 * 22 13 12 47 47 H 1.08999 * 110.75776 * 279.62883 * 23 22 13 48 48 H 1.09001 * 110.91370 * 156.32529 * 23 22 13 49 49 H 1.08996 * 110.48756 * 203.38450 * 24 23 22 50 50 H 1.08998 * 110.48790 * 80.73661 * 24 23 22 51 51 H 1.09005 * 110.02861 * 238.57215 * 25 13 12 52 52 H 1.08999 * 110.02960 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 6 5.6099 2.8852 0.0013 7 6 6.1199 4.3277 0.0026 8 6 7.6498 4.3278 0.0032 9 8 8.1338 5.6967 0.0051 10 6 9.4686 5.8731 0.0053 11 8 10.2088 4.9095 0.0045 12 7 9.9837 7.1186 0.0064 13 6 11.4316 7.3123 0.1168 14 6 12.1264 6.6959 -1.0700 15 1 12.8821 5.9390 -0.9201 16 6 11.7975 7.0983 -2.3470 17 7 10.8033 7.9382 -2.5362 18 14 12.7638 6.4505 -3.8085 19 1 12.1314 5.2023 -4.3060 20 1 12.7679 7.4684 -4.8897 21 1 14.1603 6.1656 -3.3914 22 6 11.9517 6.6778 1.4232 23 6 13.0545 7.6523 1.9060 24 6 12.4648 9.0395 1.5497 25 6 11.7579 8.8140 0.1972 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 3.7162 3.3987 0.8913 36 1 3.7169 3.3993 -0.8886 37 1 5.9733 2.3718 -0.8890 38 1 5.9733 2.3709 0.8911 39 1 5.7565 4.8407 0.8931 40 1 5.7565 4.8423 -0.8869 41 1 8.0136 3.8146 -0.8869 42 1 8.0129 3.8132 0.8930 43 1 9.3957 7.8867 -0.0658 44 1 10.5247 8.1648 -3.4373 45 1 11.1513 6.6120 2.1602 46 1 12.3730 5.6919 1.2271 47 1 13.9862 7.4787 1.3676 48 1 13.2091 7.5630 2.9813 49 1 13.2606 9.7771 1.4458 50 1 11.7474 9.3551 2.3072 51 1 12.4195 9.0967 -0.6217 52 1 10.8389 9.3985 0.1546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194756217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:23 Heat of formation + Delta-G solvation = -134.939350 kcal Electronic energy + Delta-G solvation = -26069.973091 eV Core-core repulsion = 22453.493667 eV Total energy + Delta-G solvation = -3616.479424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.32270 -37.63926 -37.00995 -35.38889 -34.37194 -32.81095 -31.89068 -31.34593 -28.03923 -27.70842 -27.10569 -24.44743 -23.94405 -21.81777 -21.26336 -20.83020 -20.52294 -19.80756 -18.79064 -17.28085 -16.61622 -16.40789 -15.79445 -15.31878 -14.87818 -14.69341 -14.37800 -14.20670 -14.06993 -13.80067 -13.73553 -13.04761 -12.91008 -12.59937 -12.39992 -12.32689 -12.18383 -11.81646 -11.57477 -11.49954 -11.19880 -11.15838 -10.94996 -10.88749 -10.86010 -10.75045 -10.68763 -10.57943 -10.50109 -10.39691 -10.21325 -10.06001 -9.77812 -9.69276 -9.40094 -9.22394 -9.11482 -8.44861 -7.49246 -6.00216 -4.04518 3.27072 3.36973 3.40212 3.43385 4.25278 4.41452 4.46191 4.61002 4.75871 4.85154 4.93508 5.02259 5.10176 5.21219 5.33092 5.36584 5.39759 5.47070 5.60195 5.62360 5.65547 5.68289 5.71230 5.72222 5.72536 5.80739 5.85273 5.87164 5.89036 5.98776 6.02467 6.09136 6.16438 6.31472 6.33902 6.40502 6.44243 6.60252 6.69225 6.78982 6.85164 6.98635 7.08524 7.26879 7.35452 7.59872 7.92254 8.12271 8.34006 8.90642 9.04551 9.59847 9.83651 11.03928 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002271 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.829885 B =12325.041255 C =13225.483476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.091 3.909 9 O -0.390 6.390 10 C 0.640 3.360 11 O -0.576 6.576 12 N -0.663 5.663 13 C 0.305 3.695 14 C -0.493 4.493 15 H 0.061 0.939 16 C 0.070 3.930 17 N -0.880 5.880 18 Si 0.890 3.110 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.096 4.096 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.259 0.741 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.074 0.926 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 -7.192 6.485 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.156 4.156 8 C 0.015 3.985 9 O -0.306 6.306 10 C 0.392 3.608 11 O -0.465 6.465 12 N -0.318 5.318 13 C 0.224 3.776 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.134 4.134 17 N -0.518 5.518 18 Si 0.719 3.281 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.135 4.135 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.217 0.783 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.072 -7.549 6.360 17.189 hybrid contribution 0.101 -0.154 -1.128 1.143 sum -13.971 -7.703 5.232 16.790 Atomic orbital electron populations 1.21785 0.96047 1.01467 1.01776 1.21551 0.95727 0.97151 1.01969 1.21636 0.95625 0.96556 1.02034 1.21623 0.95131 0.97017 1.02115 1.21580 0.95128 0.96622 1.02223 1.21500 0.95382 0.96048 1.02501 1.21560 0.93600 0.97137 1.03301 1.22640 0.93178 0.80807 1.01873 1.86198 1.25030 1.31093 1.88303 1.18245 0.79467 0.85830 0.77263 1.90869 1.59057 1.40044 1.56543 1.45672 1.08965 1.03085 1.74039 1.18656 0.75182 0.91508 0.92246 1.21293 1.20672 1.21293 0.89977 0.92095 1.24965 0.95171 0.94349 0.98893 1.69926 1.26618 1.33771 1.21468 0.86609 0.80756 0.78467 0.82303 1.20887 1.21371 1.19765 1.22681 0.96713 0.99057 0.97118 1.22394 0.99063 0.95571 0.98611 1.22397 0.98963 0.96771 0.98217 1.22211 0.99271 0.96641 0.95336 0.92793 0.92917 0.92802 0.92098 0.92114 0.92079 0.92050 0.91991 0.92025 0.91926 0.91883 0.91650 0.91725 0.91208 0.91061 0.92033 0.92232 0.78326 0.93125 0.93980 0.91548 0.91631 0.93373 0.92912 0.93096 0.90752 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 5 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 6 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 7 C -0.12 -1.53 5.59 -26.73 -0.15 -1.68 16 8 C 0.09 1.57 5.47 37.15 0.20 1.77 16 9 O -0.39 -8.30 10.27 -40.32 -0.41 -8.72 16 10 C 0.64 15.70 8.16 54.06 0.44 16.15 16 11 O -0.58 -15.60 14.36 -19.28 -0.28 -15.88 16 12 N -0.66 -15.78 4.13 -52.50 -0.22 -15.99 16 13 C 0.31 7.31 0.50 -131.85 -0.07 7.24 16 14 C -0.49 -13.44 6.67 -34.44 -0.23 -13.67 16 15 H 0.06 1.73 7.54 -52.49 -0.40 1.34 16 16 C 0.07 1.90 5.01 -17.82 -0.09 1.81 16 17 N -0.88 -24.06 12.03 55.43 0.67 -23.39 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.12 -2.56 4.85 -25.07 -0.12 -2.68 16 23 C -0.12 -2.18 6.91 -24.74 -0.17 -2.35 16 24 C -0.13 -2.25 6.83 -25.07 -0.17 -2.42 16 25 C -0.10 -2.07 5.56 -25.61 -0.14 -2.21 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.38 8.65 8.19 -40.82 -0.33 8.32 16 44 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 45 H 0.04 0.89 8.02 -51.93 -0.42 0.48 16 46 H 0.07 1.58 7.48 -51.93 -0.39 1.19 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.07 1.75 7.43 -51.93 -0.39 1.37 16 52 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 LS Contribution 409.30 15.07 6.17 6.17 Total: -1.00 -29.82 409.30 -10.26 -40.08 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -10.32 Total: 5.29 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.84 Total: -4.30 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.45 Total: -39.39 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.69 Total: -24.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.82 -10.26 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194756217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.864 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds