Wall clock time and date at job start Fri Apr 10 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46926 * 2 1 4 4 C 1.52993 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47016 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46926 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46926 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47016 * 179.97438 * 7 6 5 9 9 O 1.45203 * 109.47239 * 180.02562 * 8 7 6 10 10 C 1.34638 * 116.99915 * 180.02562 * 9 8 7 11 11 O 1.21507 * 120.00209 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99506 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99660 * 175.02163 * 12 10 9 14 14 C 1.50703 * 110.01501 * 62.67204 * 13 12 10 15 15 H 1.07994 * 119.99903 * 237.41770 * 14 13 12 16 16 C 1.37872 * 119.99987 * 57.42102 * 14 13 12 17 17 N 1.31513 * 120.00319 * 354.43595 * 16 14 13 18 18 Si 1.86804 * 120.00155 * 174.43585 * 16 14 13 19 19 H 1.48504 * 109.46956 * 89.99639 * 18 16 14 20 20 H 1.48496 * 109.47304 * 210.00162 * 18 16 14 21 21 H 1.48507 * 109.46631 * 330.00241 * 18 16 14 22 22 C 1.54260 * 110.03535 * 301.22817 * 13 12 10 23 23 C 1.54892 * 104.19723 * 217.10543 * 22 13 12 24 24 C 1.54891 * 102.74711 * 37.94405 * 23 22 13 25 25 C 1.53883 * 110.03011 * 184.06059 * 13 12 10 26 26 H 1.09003 * 109.47091 * 60.00023 * 1 2 3 27 27 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47414 * 299.99980 * 1 2 3 29 29 H 1.09002 * 109.47231 * 240.00264 * 2 1 3 30 30 H 1.08994 * 109.47210 * 120.00289 * 2 1 3 31 31 H 1.09002 * 109.46950 * 60.00092 * 3 2 1 32 32 H 1.09003 * 109.47217 * 299.99900 * 3 2 1 33 33 H 1.09002 * 109.47175 * 60.00243 * 4 3 2 34 34 H 1.08999 * 109.47641 * 300.00449 * 4 3 2 35 35 H 1.09002 * 109.46950 * 60.00106 * 5 4 3 36 36 H 1.08994 * 109.47412 * 300.00178 * 5 4 3 37 37 H 1.09002 * 109.47231 * 60.00264 * 6 5 4 38 38 H 1.09003 * 109.47091 * 299.99977 * 6 5 4 39 39 H 1.09002 * 109.46950 * 60.00092 * 7 6 5 40 40 H 1.08990 * 109.46941 * 300.00140 * 7 6 5 41 41 H 1.08994 * 109.47358 * 60.00000 * 8 7 6 42 42 H 1.09007 * 109.47521 * 300.00137 * 8 7 6 43 43 H 0.97001 * 120.00170 * 355.02148 * 12 10 9 44 44 H 0.97006 * 120.00172 * 185.02275 * 17 16 14 45 45 H 1.09001 * 110.48564 * 335.78386 * 22 13 12 46 46 H 1.08998 * 110.48859 * 98.42994 * 22 13 12 47 47 H 1.08999 * 110.75776 * 279.62883 * 23 22 13 48 48 H 1.09001 * 110.91370 * 156.32529 * 23 22 13 49 49 H 1.08996 * 110.48756 * 203.38450 * 24 23 22 50 50 H 1.08998 * 110.48790 * 80.73661 * 24 23 22 51 51 H 1.09005 * 110.02861 * 238.57215 * 25 13 12 52 52 H 1.08999 * 110.02960 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 6 5.6099 2.8852 0.0013 7 6 6.1199 4.3277 0.0026 8 6 7.6498 4.3278 0.0032 9 8 8.1338 5.6967 0.0051 10 6 9.4686 5.8731 0.0053 11 8 10.2088 4.9095 0.0045 12 7 9.9837 7.1186 0.0064 13 6 11.4316 7.3123 0.1168 14 6 12.1264 6.6959 -1.0700 15 1 12.8821 5.9390 -0.9201 16 6 11.7975 7.0983 -2.3470 17 7 10.8033 7.9382 -2.5362 18 14 12.7638 6.4505 -3.8085 19 1 12.1314 5.2023 -4.3060 20 1 12.7679 7.4684 -4.8897 21 1 14.1603 6.1656 -3.3914 22 6 11.9517 6.6778 1.4232 23 6 13.0545 7.6523 1.9060 24 6 12.4648 9.0395 1.5497 25 6 11.7579 8.8140 0.1972 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 3.7162 3.3987 0.8913 36 1 3.7169 3.3993 -0.8886 37 1 5.9733 2.3718 -0.8890 38 1 5.9733 2.3709 0.8911 39 1 5.7565 4.8407 0.8931 40 1 5.7565 4.8423 -0.8869 41 1 8.0136 3.8146 -0.8869 42 1 8.0129 3.8132 0.8930 43 1 9.3957 7.8867 -0.0658 44 1 10.5247 8.1648 -3.4373 45 1 11.1513 6.6120 2.1602 46 1 12.3730 5.6919 1.2271 47 1 13.9862 7.4787 1.3676 48 1 13.2091 7.5630 2.9813 49 1 13.2606 9.7771 1.4458 50 1 11.7474 9.3551 2.3072 51 1 12.4195 9.0967 -0.6217 52 1 10.8389 9.3985 0.1546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194756217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:22 Heat of formation + Delta-G solvation = -149.319196 kcal Electronic energy + Delta-G solvation = -26070.596648 eV Core-core repulsion = 22453.493667 eV Total energy + Delta-G solvation = -3617.102981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16266 -39.29893 -37.84625 -36.90201 -35.41799 -34.69561 -33.79881 -32.30441 -29.46670 -29.26331 -28.51570 -26.06130 -25.19322 -22.80510 -22.34493 -21.81348 -21.62782 -21.35045 -20.68489 -19.07783 -18.61204 -17.54769 -17.09750 -16.82912 -16.62750 -16.05083 -15.85748 -15.72248 -14.92793 -14.90114 -14.69901 -14.57319 -14.20922 -14.08901 -13.72199 -13.41008 -13.24814 -13.07470 -12.90691 -12.84000 -12.64056 -12.52952 -12.41458 -12.24092 -12.03617 -11.96183 -11.81607 -11.73754 -11.68241 -11.50605 -11.36240 -11.30923 -11.29646 -11.27276 -11.25792 -11.18410 -11.01526 -10.50888 -9.44598 -8.08236 -6.17053 1.33565 1.37540 1.45984 1.65064 2.31653 2.43310 3.14763 3.58924 3.89278 3.93725 4.01114 4.06188 4.06774 4.14913 4.21901 4.27804 4.28756 4.33681 4.44659 4.54303 4.54947 4.74889 4.78173 4.83561 4.83979 4.88702 4.94837 4.98890 5.02252 5.05846 5.08443 5.09422 5.14118 5.19827 5.22367 5.23851 5.29220 5.31521 5.32760 5.42501 5.43885 5.52362 5.55695 5.60978 5.63941 5.75308 5.86436 6.20843 6.38015 6.80935 7.10375 7.48772 7.94332 8.92948 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002271 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.829885 B =12325.041255 C =13225.483476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.106 4.106 8 C 0.084 3.916 9 O -0.390 6.390 10 C 0.636 3.364 11 O -0.609 6.609 12 N -0.659 5.659 13 C 0.292 3.708 14 C -0.508 4.508 15 H 0.037 0.963 16 C 0.031 3.969 17 N -0.892 5.892 18 Si 0.936 3.064 19 H -0.294 1.294 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.090 4.090 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.390 0.610 44 H 0.258 0.742 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.048 0.952 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -6.667 7.541 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.144 4.144 8 C 0.009 3.991 9 O -0.305 6.305 10 C 0.388 3.612 11 O -0.501 6.501 12 N -0.314 5.314 13 C 0.211 3.789 14 C -0.547 4.547 15 H 0.055 0.945 16 C -0.170 4.170 17 N -0.530 5.530 18 Si 0.763 3.237 19 H -0.221 1.221 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.223 0.777 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.067 0.933 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.895 -7.009 7.418 18.056 hybrid contribution 0.311 -0.393 -1.455 1.539 sum -14.584 -7.401 5.963 17.408 Atomic orbital electron populations 1.21786 0.95567 1.01852 1.01884 1.21555 0.96181 0.96785 1.01953 1.21611 0.95008 0.96925 1.02089 1.21595 0.95659 0.96300 1.02110 1.21537 0.93625 0.97371 1.02545 1.21485 0.96597 0.94182 1.02683 1.21553 0.90051 0.99037 1.03762 1.23018 0.95922 0.78869 1.01296 1.86204 1.23015 1.33450 1.87840 1.18414 0.80297 0.85634 0.76888 1.90840 1.60185 1.41033 1.58032 1.45582 1.09172 1.03141 1.73507 1.18846 0.74936 0.93094 0.92057 1.21431 1.20711 1.20889 0.91676 0.94520 1.25476 0.96031 0.94901 1.00634 1.69976 1.27139 1.34290 1.21615 0.85906 0.79820 0.77637 0.80328 1.22085 1.20183 1.19405 1.22569 0.97873 0.98355 0.96366 1.22373 0.97370 0.94689 1.00467 1.22355 0.99720 0.96890 0.96250 1.22072 0.99231 0.94680 0.96925 0.92782 0.92432 0.92607 0.92254 0.92019 0.91853 0.92156 0.92243 0.91823 0.91305 0.91879 0.91952 0.91164 0.90127 0.91171 0.93527 0.91986 0.77666 0.93244 0.93614 0.94519 0.92246 0.90106 0.90646 0.90808 0.93284 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.56 5.93 30.60 0.18 -1.38 16 3 C -0.12 -1.56 5.21 30.59 0.16 -1.40 16 4 C -0.12 -1.73 5.21 30.59 0.16 -1.57 16 5 C -0.11 -1.83 5.21 30.60 0.16 -1.67 16 6 C -0.11 -2.20 5.21 30.60 0.16 -2.04 16 7 C -0.11 -2.65 5.59 30.59 0.17 -2.48 16 8 C 0.08 2.90 5.47 71.98 0.39 3.30 16 9 O -0.39 -16.65 10.27 -55.47 -0.57 -17.22 16 10 C 0.64 31.63 8.16 129.79 1.06 32.69 16 11 O -0.61 -33.90 14.36 19.82 0.28 -33.62 16 12 N -0.66 -31.57 4.13 -550.41 -2.27 -33.84 16 13 C 0.29 14.05 0.50 3.58 0.00 14.05 16 14 C -0.51 -28.27 6.67 25.60 0.17 -28.10 16 15 H 0.04 2.16 7.54 -2.91 -0.02 2.14 16 16 C 0.03 1.72 5.01 84.65 0.42 2.14 16 17 N -0.89 -49.08 12.03 21.45 0.26 -48.82 16 18 Si 0.94 45.23 29.54 68.60 2.03 47.26 16 19 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 C -0.11 -4.91 4.85 31.67 0.15 -4.76 16 23 C -0.11 -3.86 6.91 31.89 0.22 -3.64 16 24 C -0.11 -3.76 6.83 31.67 0.22 -3.54 16 25 C -0.09 -3.81 5.56 31.32 0.17 -3.64 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.39 17.53 8.19 -92.71 -0.76 16.77 16 44 H 0.26 13.83 8.32 -92.70 -0.77 13.06 16 45 H 0.05 1.91 8.02 -2.39 -0.02 1.89 16 46 H 0.04 1.78 7.48 -2.39 -0.02 1.76 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.05 2.29 7.43 -2.38 -0.02 2.28 16 52 H 0.05 2.05 7.45 -2.39 -0.02 2.03 16 Total: -1.00 -64.66 409.30 4.34 -60.32 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.09 Total: 28.91 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.52 Total: -2.99 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.01 Total: -82.66 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.29 Total: -50.84 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.66 4.34 -60.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194756217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.996 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds