Wall clock time and date at job start Fri Apr 10 2020 22:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.08993 * 109.47515 * 305.00080 * 3 2 1 5 5 C 1.53002 * 109.47428 * 184.99591 * 3 2 1 6 6 O 1.45201 * 109.47408 * 64.99731 * 3 2 1 7 7 C 1.34635 * 117.00352 * 209.99788 * 6 3 2 8 8 O 1.21505 * 119.99712 * 0.02562 * 7 6 3 9 9 N 1.34782 * 120.00234 * 179.97438 * 7 6 3 10 10 C 1.46500 * 119.99934 * 0.02562 * 9 7 6 11 11 C 1.50706 * 109.46953 * 89.99140 * 10 9 7 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.46495 * 119.99992 * 180.02562 * 9 7 6 20 20 C 1.53012 * 109.47147 * 60.00517 * 19 9 7 21 21 C 1.52989 * 109.46241 * 164.04341 * 20 19 9 22 22 C 1.52981 * 109.51019 * 315.98954 * 21 20 19 23 23 C 1.53010 * 109.47124 * 112.93473 * 22 21 20 24 24 C 1.53004 * 109.42853 * 284.04610 * 23 22 21 25 25 C 1.52988 * 109.48890 * 75.96175 * 24 23 22 26 26 C 1.52995 * 109.50442 * 247.06121 * 25 24 23 27 27 H 1.09006 * 109.47102 * 300.00340 * 1 2 3 28 28 H 1.09004 * 109.46983 * 59.99695 * 1 2 3 29 29 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47482 * 239.99344 * 2 1 3 31 31 H 1.09003 * 109.46873 * 119.99764 * 2 1 3 32 32 H 1.08998 * 109.46553 * 59.99579 * 5 3 2 33 33 H 1.08997 * 109.47828 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46975 * 300.00049 * 5 3 2 35 35 H 1.09000 * 109.47175 * 329.99569 * 10 9 7 36 36 H 1.08993 * 109.47452 * 209.99360 * 10 9 7 37 37 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47129 * 180.02562 * 19 9 7 39 39 H 1.08998 * 109.47415 * 284.04426 * 20 19 9 40 40 H 1.09006 * 109.47224 * 44.04531 * 20 19 9 41 41 H 1.09006 * 109.46727 * 195.98036 * 21 20 19 42 42 H 1.09002 * 109.45991 * 76.00082 * 21 20 19 43 43 H 1.08997 * 109.47053 * 352.93638 * 22 21 20 44 44 H 1.09002 * 109.47268 * 232.93709 * 22 21 20 45 45 H 1.08997 * 109.48377 * 164.05367 * 23 22 21 46 46 H 1.09001 * 109.47913 * 44.03209 * 23 22 21 47 47 H 1.08995 * 109.47148 * 315.95007 * 24 23 22 48 48 H 1.09003 * 109.45907 * 195.96119 * 24 23 22 49 49 H 1.09000 * 109.46469 * 127.04929 * 25 24 23 50 50 H 1.09008 * 109.46296 * 7.06996 * 25 24 23 51 51 H 1.09000 * 109.47321 * 284.01768 * 26 25 24 52 52 H 1.08996 * 109.47399 * 164.00470 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1256 6 8 1.6559 2.0917 1.2407 7 6 1.4462 3.4209 1.1956 8 8 1.5801 4.0218 0.1481 9 7 1.0868 4.0847 2.3122 10 6 0.9248 3.3600 3.5751 11 6 2.2383 3.3382 4.3137 12 1 3.1066 3.8167 3.8855 13 6 2.3309 2.7083 5.5367 14 7 3.4769 2.6897 6.1815 15 14 0.8288 1.8813 6.2777 16 1 0.0888 2.8584 7.1160 17 1 -0.0554 1.3937 5.1887 18 1 1.2587 0.7343 7.1172 19 6 0.8581 5.5309 2.2630 20 6 -0.2681 5.8358 1.2731 21 6 -0.7778 7.2597 1.5037 22 6 -0.9322 7.5103 3.0050 23 6 0.0903 8.5556 3.4554 24 6 1.4744 7.9094 3.5420 25 6 2.0418 7.7272 2.1330 26 6 2.1392 6.2347 1.8106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 3.8532 0.9569 -1.0569 33 1 3.9282 2.4719 -0.1261 34 1 3.9994 0.9053 0.7163 35 1 0.6067 2.3380 3.3693 36 1 0.1725 3.8585 4.1862 37 1 3.5421 2.2468 7.0421 38 1 0.5780 5.8883 3.2539 39 1 0.1090 5.7453 0.2545 40 1 -1.0844 5.1290 1.4225 41 1 -1.7435 7.3837 1.0136 42 1 -0.0654 7.9722 1.0879 43 1 -0.7640 6.5801 3.5477 44 1 -1.9388 7.8743 3.2110 45 1 -0.1923 8.9423 4.4345 46 1 0.1155 9.3734 2.7351 47 1 1.3919 6.9377 4.0289 48 1 2.1390 8.5506 4.1211 49 1 3.0338 8.1758 2.0800 50 1 1.3847 8.2126 1.4113 51 1 2.9938 5.8051 2.3332 52 1 2.2664 6.1026 0.7361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195101821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:26 Heat of formation + Delta-G solvation = -95.531928 kcal Electronic energy + Delta-G solvation = -28936.340069 eV Core-core repulsion = 25321.569478 eV Total energy + Delta-G solvation = -3614.770590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26040 -38.89975 -36.56135 -34.85453 -33.63366 -32.64644 -32.53480 -31.39013 -29.70017 -27.83025 -25.80111 -25.60420 -23.75128 -22.76231 -21.64348 -21.16570 -20.46512 -19.95173 -18.95038 -17.00769 -16.92338 -16.45338 -15.60344 -15.27299 -14.69003 -14.24771 -14.09179 -13.89629 -13.85879 -13.79399 -13.63018 -13.28923 -13.00101 -12.82520 -12.61561 -12.42109 -12.00002 -11.89777 -11.73691 -11.51293 -11.49212 -11.37461 -11.13554 -11.01971 -10.94506 -10.83854 -10.68966 -10.56720 -10.51366 -10.33796 -10.22035 -10.17944 -9.89596 -9.75501 -9.58486 -9.35240 -9.26934 -8.63328 -7.74733 -6.12377 -4.11701 2.95145 3.23150 3.32033 3.33340 3.64772 4.34864 4.57219 4.86469 4.93270 5.06918 5.10381 5.16476 5.19192 5.29234 5.32552 5.41305 5.48619 5.52134 5.55007 5.60722 5.65536 5.72133 5.78263 5.86813 5.93849 6.00834 6.02476 6.09796 6.13832 6.16286 6.21153 6.26345 6.27505 6.33177 6.39210 6.39778 6.41735 6.47216 6.53925 6.61894 6.67017 6.68489 6.80309 6.85343 6.92861 7.11054 7.44630 7.54056 8.21927 8.48620 8.92361 9.16458 9.47970 11.00646 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.006519 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.354988 B = 4294.195421 C = 6005.582873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.102 3.898 4 H 0.080 0.920 5 C -0.168 4.168 6 O -0.348 6.348 7 C 0.653 3.347 8 O -0.597 6.597 9 N -0.573 5.573 10 C 0.213 3.787 11 C -0.529 4.529 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.870 3.130 16 H -0.275 1.275 17 H -0.264 1.264 18 H -0.284 1.284 19 C 0.157 3.843 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.131 4.131 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 4.013 -9.771 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.046 3.954 4 H 0.098 0.902 5 C -0.225 4.225 6 O -0.261 6.261 7 C 0.407 3.593 8 O -0.489 6.489 9 N -0.310 5.310 10 C 0.092 3.908 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.127 4.127 14 N -0.533 5.533 15 Si 0.696 3.304 16 H -0.201 1.201 17 H -0.188 1.188 18 H -0.210 1.210 19 C 0.055 3.945 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.170 4.170 23 C -0.154 4.154 24 C -0.172 4.172 25 C -0.158 4.158 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.951 4.041 -9.920 12.769 hybrid contribution -0.512 -0.558 0.603 0.968 sum -7.462 3.484 -9.317 12.435 Atomic orbital electron populations 1.21746 0.95508 1.01415 1.02274 1.21656 0.96595 0.94610 1.02936 1.22534 0.95049 0.92463 0.85355 0.90204 1.22175 0.95135 1.03137 1.02072 1.86454 1.81506 1.21082 1.37074 1.18045 0.76368 0.80824 0.84017 1.90823 1.59561 1.68187 1.30376 1.47000 1.68741 1.07254 1.07991 1.19799 0.97831 0.92268 0.80855 1.21348 0.95651 1.36204 1.03537 0.90514 1.24837 0.95735 0.95525 0.96651 1.69898 1.24489 1.43755 1.15112 0.86948 0.83727 0.79868 0.79824 1.20062 1.18817 1.20985 1.21527 0.94537 0.77697 1.00699 1.22070 0.97773 0.96023 1.01257 1.21813 1.00687 0.97344 0.96098 1.21878 0.98607 0.99959 0.96580 1.21695 0.95254 0.97679 1.00746 1.21891 0.95862 1.02024 0.97467 1.21794 1.00548 0.96630 0.96784 1.22018 0.97958 0.94369 1.02569 0.91978 0.93054 0.92751 0.90396 0.90608 0.91608 0.91869 0.91479 0.94280 0.95647 0.92575 0.87051 0.90194 0.92540 0.92600 0.90860 0.90724 0.92559 0.92462 0.92179 0.90020 0.92410 0.92565 0.91341 0.91398 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.81 37.16 0.36 -1.60 16 2 C -0.12 -1.61 5.65 -26.73 -0.15 -1.76 16 3 C 0.10 1.68 2.56 -26.73 -0.07 1.61 16 4 H 0.08 1.33 7.16 -51.93 -0.37 0.95 16 5 C -0.17 -2.58 9.55 37.16 0.35 -2.23 16 6 O -0.35 -7.21 8.25 -40.31 -0.33 -7.54 16 7 C 0.65 14.01 7.79 54.06 0.42 14.44 16 8 O -0.60 -12.84 12.29 -19.28 -0.24 -13.08 16 9 N -0.57 -12.17 2.41 -173.22 -0.42 -12.59 16 10 C 0.21 4.98 4.20 -5.19 -0.02 4.96 16 11 C -0.53 -14.44 9.94 -34.44 -0.34 -14.78 16 12 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 13 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 15 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.16 2.83 1.95 -67.92 -0.13 2.70 16 20 C -0.13 -2.10 4.61 -26.73 -0.12 -2.22 16 21 C -0.12 -1.55 5.48 -26.75 -0.15 -1.69 16 22 C -0.13 -1.65 5.47 -26.74 -0.15 -1.80 16 23 C -0.12 -1.38 5.59 -26.72 -0.15 -1.53 16 24 C -0.14 -1.89 5.47 -26.74 -0.15 -2.04 16 25 C -0.12 -1.71 5.48 -26.74 -0.15 -1.86 16 26 C -0.13 -2.32 4.61 -26.73 -0.12 -2.44 16 27 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.94 6.43 -51.93 -0.33 0.61 16 36 H 0.03 0.57 7.35 -51.93 -0.38 0.19 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 2.00 2.48 -51.93 -0.13 1.87 16 39 H 0.08 1.38 6.45 -51.93 -0.33 1.04 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.90 4.69 -51.93 -0.24 0.65 16 43 H 0.07 1.06 5.47 -51.93 -0.28 0.77 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 47 H 0.08 1.35 5.47 -51.93 -0.28 1.07 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 0.88 4.69 -51.92 -0.24 0.64 16 51 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 52 H 0.08 1.42 6.45 -51.93 -0.33 1.08 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -29.98 381.04 -9.04 -39.02 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -9.24 Total: 6.63 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.65 Total: -8.26 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.36 Total: -38.40 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.57 Total: -20.62 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.98 -9.04 -39.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195101821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.514 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds