Wall clock time and date at job start Fri Apr 10 2020 22:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.08993 * 109.47515 * 305.00080 * 3 2 1 5 5 C 1.53002 * 109.47428 * 184.99591 * 3 2 1 6 6 O 1.45201 * 109.47408 * 64.99731 * 3 2 1 7 7 C 1.34635 * 117.00352 * 209.99788 * 6 3 2 8 8 O 1.21505 * 119.99712 * 0.02562 * 7 6 3 9 9 N 1.34782 * 120.00234 * 179.97438 * 7 6 3 10 10 C 1.46500 * 119.99934 * 0.02562 * 9 7 6 11 11 C 1.50706 * 109.46953 * 89.99140 * 10 9 7 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.46495 * 119.99992 * 180.02562 * 9 7 6 20 20 C 1.53012 * 109.47147 * 60.00517 * 19 9 7 21 21 C 1.52989 * 109.46241 * 164.04341 * 20 19 9 22 22 C 1.52981 * 109.51019 * 315.98954 * 21 20 19 23 23 C 1.53010 * 109.47124 * 112.93473 * 22 21 20 24 24 C 1.53004 * 109.42853 * 284.04610 * 23 22 21 25 25 C 1.52988 * 109.48890 * 75.96175 * 24 23 22 26 26 C 1.52995 * 109.50442 * 247.06121 * 25 24 23 27 27 H 1.09006 * 109.47102 * 300.00340 * 1 2 3 28 28 H 1.09004 * 109.46983 * 59.99695 * 1 2 3 29 29 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47482 * 239.99344 * 2 1 3 31 31 H 1.09003 * 109.46873 * 119.99764 * 2 1 3 32 32 H 1.08998 * 109.46553 * 59.99579 * 5 3 2 33 33 H 1.08997 * 109.47828 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46975 * 300.00049 * 5 3 2 35 35 H 1.09000 * 109.47175 * 329.99569 * 10 9 7 36 36 H 1.08993 * 109.47452 * 209.99360 * 10 9 7 37 37 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47129 * 180.02562 * 19 9 7 39 39 H 1.08998 * 109.47415 * 284.04426 * 20 19 9 40 40 H 1.09006 * 109.47224 * 44.04531 * 20 19 9 41 41 H 1.09006 * 109.46727 * 195.98036 * 21 20 19 42 42 H 1.09002 * 109.45991 * 76.00082 * 21 20 19 43 43 H 1.08997 * 109.47053 * 352.93638 * 22 21 20 44 44 H 1.09002 * 109.47268 * 232.93709 * 22 21 20 45 45 H 1.08997 * 109.48377 * 164.05367 * 23 22 21 46 46 H 1.09001 * 109.47913 * 44.03209 * 23 22 21 47 47 H 1.08995 * 109.47148 * 315.95007 * 24 23 22 48 48 H 1.09003 * 109.45907 * 195.96119 * 24 23 22 49 49 H 1.09000 * 109.46469 * 127.04929 * 25 24 23 50 50 H 1.09008 * 109.46296 * 7.06996 * 25 24 23 51 51 H 1.09000 * 109.47321 * 284.01768 * 26 25 24 52 52 H 1.08996 * 109.47399 * 164.00470 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1256 6 8 1.6559 2.0917 1.2407 7 6 1.4462 3.4209 1.1956 8 8 1.5801 4.0218 0.1481 9 7 1.0868 4.0847 2.3122 10 6 0.9248 3.3600 3.5751 11 6 2.2383 3.3382 4.3137 12 1 3.1066 3.8167 3.8855 13 6 2.3309 2.7083 5.5367 14 7 3.4769 2.6897 6.1815 15 14 0.8288 1.8813 6.2777 16 1 0.0888 2.8584 7.1160 17 1 -0.0554 1.3937 5.1887 18 1 1.2587 0.7343 7.1172 19 6 0.8581 5.5309 2.2630 20 6 -0.2681 5.8358 1.2731 21 6 -0.7778 7.2597 1.5037 22 6 -0.9322 7.5103 3.0050 23 6 0.0903 8.5556 3.4554 24 6 1.4744 7.9094 3.5420 25 6 2.0418 7.7272 2.1330 26 6 2.1392 6.2347 1.8106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 3.8532 0.9569 -1.0569 33 1 3.9282 2.4719 -0.1261 34 1 3.9994 0.9053 0.7163 35 1 0.6067 2.3380 3.3693 36 1 0.1725 3.8585 4.1862 37 1 3.5421 2.2468 7.0421 38 1 0.5780 5.8883 3.2539 39 1 0.1090 5.7453 0.2545 40 1 -1.0844 5.1290 1.4225 41 1 -1.7435 7.3837 1.0136 42 1 -0.0654 7.9722 1.0879 43 1 -0.7640 6.5801 3.5477 44 1 -1.9388 7.8743 3.2110 45 1 -0.1923 8.9423 4.4345 46 1 0.1155 9.3734 2.7351 47 1 1.3919 6.9377 4.0289 48 1 2.1390 8.5506 4.1211 49 1 3.0338 8.1758 2.0800 50 1 1.3847 8.2126 1.4113 51 1 2.9938 5.8051 2.3332 52 1 2.2664 6.1026 0.7361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195101821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:25 Heat of formation + Delta-G solvation = -110.960427 kcal Electronic energy + Delta-G solvation = -28937.009099 eV Core-core repulsion = 25321.569478 eV Total energy + Delta-G solvation = -3615.439620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81386 -40.24424 -37.98306 -36.58498 -34.92943 -34.62949 -33.72566 -32.85160 -30.92236 -29.72950 -27.15130 -26.83702 -25.08905 -24.48498 -23.03367 -22.44745 -21.64432 -21.36538 -20.31173 -19.06216 -18.65217 -17.94274 -17.11961 -16.87075 -16.10719 -15.92576 -15.35725 -15.14107 -15.08466 -14.98673 -14.96311 -14.77385 -14.41458 -14.14296 -14.08748 -13.86813 -13.77118 -13.32684 -13.25850 -12.90622 -12.68148 -12.63956 -12.59415 -12.45531 -12.37029 -12.10364 -12.01880 -11.93062 -11.89766 -11.71703 -11.65446 -11.60621 -11.50354 -11.28481 -11.14656 -10.78551 -10.69702 -10.56276 -9.47868 -8.29959 -6.35694 1.35672 1.36160 1.44270 1.49368 1.96228 2.33353 3.01441 3.07485 3.67402 3.73631 3.93542 3.96568 3.96780 4.10908 4.15901 4.22744 4.28846 4.29999 4.33347 4.38732 4.40448 4.55909 4.63505 4.64556 4.67900 4.77093 4.81991 4.87849 4.92871 4.96199 5.01222 5.01598 5.08371 5.10271 5.11847 5.15868 5.18778 5.25790 5.27253 5.35546 5.36613 5.39904 5.44542 5.48899 5.59982 5.64982 5.66360 5.79335 6.20107 6.59728 6.67461 7.26056 7.50552 8.86764 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.006519 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.354988 B = 4294.195421 C = 6005.582873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.078 0.922 5 C -0.163 4.163 6 O -0.369 6.369 7 C 0.647 3.353 8 O -0.603 6.603 9 N -0.581 5.581 10 C 0.225 3.775 11 C -0.531 4.531 12 H 0.025 0.975 13 C 0.018 3.982 14 N -0.943 5.943 15 Si 0.940 3.060 16 H -0.258 1.258 17 H -0.246 1.246 18 H -0.282 1.282 19 C 0.150 3.850 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.122 4.122 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.092 0.908 51 H 0.023 0.977 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 4.325 -10.523 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.036 3.964 4 H 0.096 0.904 5 C -0.220 4.220 6 O -0.283 6.283 7 C 0.402 3.598 8 O -0.496 6.496 9 N -0.318 5.318 10 C 0.103 3.897 11 C -0.569 4.569 12 H 0.043 0.957 13 C -0.180 4.180 14 N -0.583 5.583 15 Si 0.763 3.237 16 H -0.182 1.182 17 H -0.170 1.170 18 H -0.208 1.208 19 C 0.049 3.951 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.170 4.170 23 C -0.148 4.148 24 C -0.172 4.172 25 C -0.150 4.150 26 C -0.160 4.160 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.110 0.890 51 H 0.042 0.958 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.698 4.370 -10.700 15.087 hybrid contribution 0.490 -0.663 0.760 1.121 sum -9.208 3.707 -9.940 14.047 Atomic orbital electron populations 1.21734 0.95059 1.02650 1.01289 1.21711 0.96984 0.92268 1.04230 1.22967 0.95660 0.94004 0.83747 0.90380 1.22168 0.94515 1.01666 1.03699 1.86444 1.81495 1.20685 1.39636 1.18202 0.76320 0.81255 0.84061 1.90796 1.59859 1.68464 1.30482 1.47146 1.68834 1.08519 1.07253 1.19538 0.95847 0.92746 0.81566 1.21441 0.95841 1.35638 1.04027 0.95655 1.25760 0.99185 0.96080 0.96974 1.70058 1.27238 1.45155 1.15815 0.85819 0.79638 0.78901 0.79351 1.18232 1.16953 1.20787 1.21818 0.95405 0.76015 1.01843 1.21950 0.96444 0.98346 0.99308 1.21798 1.01809 0.94860 0.96727 1.21866 1.00035 0.99212 0.95863 1.21680 0.93175 0.97803 1.02108 1.21864 0.97903 1.00706 0.96738 1.21786 1.01634 0.93827 0.97752 1.21892 0.96345 0.96885 1.00891 0.94697 0.92297 0.90378 0.86751 0.91491 0.87636 0.94615 0.92537 0.94514 0.93814 0.92346 0.86719 0.91811 0.92945 0.90422 0.90080 0.92860 0.90284 0.91326 0.90054 0.93223 0.91772 0.92038 0.88977 0.95773 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.81 71.98 0.71 -2.95 16 2 C -0.11 -2.90 5.65 30.59 0.17 -2.73 16 3 C 0.09 3.02 2.56 30.59 0.08 3.10 16 4 H 0.08 2.59 7.16 -2.39 -0.02 2.58 16 5 C -0.16 -5.09 9.55 71.98 0.69 -4.40 16 6 O -0.37 -15.84 8.25 -55.44 -0.46 -16.30 16 7 C 0.65 28.95 7.79 129.79 1.01 29.96 16 8 O -0.60 -26.91 12.29 19.83 0.24 -26.67 16 9 N -0.58 -25.67 2.41 -932.35 -2.24 -27.91 16 10 C 0.23 10.74 4.20 85.63 0.36 11.11 16 11 C -0.53 -30.43 9.94 25.60 0.25 -30.18 16 12 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 13 C 0.02 1.05 5.47 84.66 0.46 1.51 16 14 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 15 Si 0.94 42.41 27.47 68.60 1.88 44.29 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 17 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 C 0.15 5.55 1.95 45.00 0.09 5.64 16 20 C -0.12 -3.79 4.61 30.59 0.14 -3.65 16 21 C -0.11 -2.61 5.48 30.58 0.17 -2.44 16 22 C -0.13 -2.95 5.47 30.59 0.17 -2.78 16 23 C -0.11 -2.32 5.59 30.60 0.17 -2.15 16 24 C -0.13 -3.70 5.47 30.59 0.17 -3.53 16 25 C -0.11 -3.18 5.48 30.59 0.17 -3.01 16 26 C -0.12 -4.55 4.61 30.60 0.14 -4.41 16 27 H 0.03 1.02 7.82 -2.38 -0.02 1.01 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.04 1.78 6.43 -2.39 -0.02 1.76 16 36 H 0.04 1.93 7.35 -2.39 -0.02 1.92 16 37 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.12 4.21 2.48 -2.39 -0.01 4.21 16 39 H 0.06 2.19 6.45 -2.39 -0.02 2.17 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.08 1.73 4.69 -2.39 -0.01 1.72 16 43 H 0.05 1.44 5.47 -2.39 -0.01 1.42 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.42 7.47 -2.39 -0.02 1.40 16 47 H 0.05 1.69 5.47 -2.39 -0.01 1.68 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 2.18 4.69 -2.38 -0.01 2.17 16 51 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 52 H 0.06 2.46 6.45 -2.39 -0.02 2.45 16 Total: -1.00 -69.64 381.04 5.50 -64.14 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.83 Total: 31.24 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 4.94 Total: -10.91 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.94 Total: -85.80 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.21 Total: -42.97 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Total: -69.64 5.50 -64.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195101821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.817 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds