Wall clock time and date at job start Fri Apr 10 2020 22:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47222 * 2 1 4 4 H 1.08997 * 109.47417 * 54.99639 * 3 2 1 5 5 C 1.52994 * 109.47226 * 174.99613 * 3 2 1 6 6 O 1.45199 * 109.46770 * 294.99608 * 3 2 1 7 7 C 1.34645 * 117.00179 * 149.99923 * 6 3 2 8 8 O 1.21515 * 119.99521 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00369 * 179.97438 * 7 6 3 10 10 C 1.46504 * 120.00072 * 0.02562 * 9 7 6 11 11 C 1.50696 * 109.47242 * 269.99880 * 10 9 7 12 12 H 1.07999 * 120.00183 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99900 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99655 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46977 * 90.00319 * 15 13 11 17 17 H 1.48503 * 109.46879 * 209.99930 * 15 13 11 18 18 H 1.48499 * 109.47419 * 330.00139 * 15 13 11 19 19 C 1.46497 * 120.00289 * 180.02562 * 9 7 6 20 20 C 1.52993 * 109.46641 * 299.99278 * 19 9 7 21 21 C 1.52989 * 109.47372 * 164.01836 * 20 19 9 22 22 C 1.53013 * 109.46522 * 75.94240 * 21 20 19 23 23 C 1.52988 * 109.45936 * 284.05508 * 22 21 20 24 24 C 1.52982 * 109.49823 * 315.98779 * 23 22 21 25 25 C 1.53013 * 109.47549 * 112.94076 * 24 23 22 26 26 C 1.52987 * 109.46535 * 60.01253 * 19 9 7 27 27 H 1.08999 * 109.47400 * 300.00541 * 1 2 3 28 28 H 1.09003 * 109.46850 * 60.00183 * 1 2 3 29 29 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47400 * 239.99459 * 2 1 3 31 31 H 1.09002 * 109.46845 * 119.99267 * 2 1 3 32 32 H 1.09007 * 109.47071 * 60.00289 * 5 3 2 33 33 H 1.09003 * 109.47475 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47653 * 300.00178 * 5 3 2 35 35 H 1.09007 * 109.47025 * 30.00078 * 10 9 7 36 36 H 1.09001 * 109.47309 * 149.99407 * 10 9 7 37 37 H 0.96998 * 119.99968 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46725 * 180.02562 * 19 9 7 39 39 H 1.09004 * 109.46559 * 284.01342 * 20 19 9 40 40 H 1.09001 * 109.46935 * 44.01228 * 20 19 9 41 41 H 1.09003 * 109.46934 * 315.94761 * 21 20 19 42 42 H 1.09000 * 109.47592 * 195.94255 * 21 20 19 43 43 H 1.09003 * 109.47454 * 164.05727 * 22 21 20 44 44 H 1.08999 * 109.47727 * 44.05033 * 22 21 20 45 45 H 1.09008 * 109.46843 * 195.98116 * 23 22 21 46 46 H 1.08999 * 109.46323 * 75.99803 * 23 22 21 47 47 H 1.08995 * 109.47348 * 352.94003 * 24 23 22 48 48 H 1.09002 * 109.47182 * 232.93920 * 24 23 22 49 49 H 1.09004 * 109.47712 * 164.04965 * 25 24 23 50 50 H 1.09007 * 109.47336 * 44.03025 * 25 24 23 51 51 H 1.09000 * 109.46982 * 247.06801 * 26 19 9 52 52 H 1.08998 * 109.46663 * 7.07005 * 26 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1258 6 8 1.6560 2.0915 -1.2408 7 6 1.4462 3.4208 -1.1958 8 8 1.5809 4.0220 -0.1485 9 7 1.0879 4.0846 -2.3126 10 6 0.9260 3.3598 -3.5755 11 6 2.2397 3.3372 -4.3136 12 1 3.1082 3.8152 -3.8851 13 6 2.3328 2.7062 -5.5360 14 7 1.2754 2.1236 -6.0575 15 14 3.9611 2.6787 -6.4512 16 1 4.7339 1.4756 -6.0504 17 1 3.7062 2.6388 -7.9137 18 1 4.7374 3.8998 -6.1171 19 6 0.8601 5.5310 -2.2639 20 6 -0.2663 5.8367 -1.2748 21 6 -0.2436 7.3246 -0.9199 22 6 -0.8250 8.1347 -2.0806 23 6 0.2060 8.2227 -3.2074 24 6 1.5830 8.5315 -2.6167 25 6 2.5058 7.3276 -2.8173 26 6 2.1415 6.2338 -1.8114 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9995 0.9053 -0.7160 33 1 3.9283 2.4720 0.1254 34 1 3.8532 0.9570 1.0572 35 1 0.6072 2.3380 -3.3697 36 1 0.1742 3.8587 -4.1870 37 1 1.3409 1.6800 -6.9176 38 1 0.5800 5.8882 -3.2548 39 1 -1.2255 5.5859 -1.7279 40 1 -0.1260 5.2451 -0.3702 41 1 0.7840 7.6387 -0.7364 42 1 -0.8407 7.4937 -0.0238 43 1 -1.0724 9.1385 -1.7351 44 1 -1.7261 7.6451 -2.4500 45 1 -0.0787 9.0157 -3.8992 46 1 0.2439 7.2725 -3.7400 47 1 1.4831 8.7392 -1.5514 48 1 2.0067 9.4016 -3.1184 49 1 3.5407 7.6332 -2.6631 50 1 2.3872 6.9437 -3.8306 51 1 1.9835 6.6809 -0.8300 52 1 2.9529 5.5083 -1.7539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195101822.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:29 Heat of formation + Delta-G solvation = -99.007707 kcal Electronic energy + Delta-G solvation = -28864.899676 eV Core-core repulsion = 25249.978364 eV Total energy + Delta-G solvation = -3614.921311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19378 -38.82984 -36.52144 -34.77690 -33.56566 -32.67734 -32.59239 -31.08550 -29.64922 -27.17474 -25.81939 -25.61216 -23.74424 -22.94973 -21.68324 -21.53305 -20.35743 -19.34232 -19.10091 -16.93207 -16.50956 -16.16695 -15.58334 -15.34893 -14.87377 -14.43848 -14.10183 -13.92309 -13.85606 -13.56606 -13.38575 -13.27722 -12.99148 -12.76150 -12.56613 -12.32616 -11.86766 -11.85963 -11.54896 -11.46443 -11.35137 -11.27490 -10.99599 -10.88971 -10.84846 -10.79459 -10.58627 -10.50271 -10.41943 -10.33935 -10.18676 -10.06025 -9.88254 -9.78500 -9.71186 -9.55191 -9.16771 -8.46638 -7.67611 -6.08049 -4.12845 3.05983 3.27908 3.34425 3.38052 3.71962 4.39033 4.72605 4.88416 4.98459 5.08260 5.14024 5.21442 5.25853 5.35463 5.40587 5.43241 5.49288 5.56225 5.58684 5.60923 5.69059 5.76886 5.82498 5.95691 6.00293 6.03392 6.07414 6.11755 6.15783 6.17868 6.25316 6.29317 6.33760 6.35695 6.42590 6.43397 6.45493 6.50998 6.55790 6.62880 6.76141 6.82452 6.93383 6.95040 7.19622 7.34050 7.67073 7.86526 8.18169 8.41759 8.89999 9.26165 9.53390 10.99464 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.008781 B = 0.006601 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.980256 B = 4240.894343 C = 6300.363868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.102 3.898 4 H 0.079 0.921 5 C -0.167 4.167 6 O -0.345 6.345 7 C 0.649 3.351 8 O -0.601 6.601 9 N -0.578 5.578 10 C 0.244 3.756 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.168 3.832 20 C -0.137 4.137 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.123 4.123 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 5.253 9.749 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.097 0.903 5 C -0.225 4.225 6 O -0.259 6.259 7 C 0.404 3.596 8 O -0.495 6.495 9 N -0.314 5.314 10 C 0.124 3.876 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.066 3.934 20 C -0.176 4.176 21 C -0.169 4.169 22 C -0.155 4.155 23 C -0.169 4.169 24 C -0.162 4.162 25 C -0.160 4.160 26 C -0.161 4.161 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.821 5.253 9.890 11.346 hybrid contribution 0.950 -0.168 -0.680 1.180 sum -0.871 5.086 9.210 10.556 Atomic orbital electron populations 1.21741 0.95411 1.01420 1.02348 1.21645 0.96718 0.94564 1.02787 1.22510 0.94836 0.92566 0.85565 0.90267 1.22175 0.95367 1.02957 1.01981 1.86491 1.81505 1.21124 1.36738 1.18093 0.76619 0.80822 0.84096 1.90828 1.59791 1.68264 1.30568 1.47382 1.68147 1.07240 1.08676 1.19408 0.97209 0.92320 0.78660 1.21449 0.96068 1.35284 1.03575 0.92304 1.24898 0.96558 0.95139 0.97232 1.69922 1.28712 1.36058 1.18561 0.86572 0.83949 0.78545 0.78830 1.20620 1.21178 1.19874 1.21265 0.94177 0.78095 0.99855 1.22102 0.98078 0.96366 1.01024 1.22002 1.02609 0.95018 0.97303 1.21645 0.98337 0.99476 0.96091 1.21892 0.94822 1.02285 0.97902 1.21822 0.95344 0.97800 1.01251 1.21754 0.98450 0.95312 1.00437 1.22099 0.97732 0.97617 0.98695 0.93164 0.91746 0.92786 0.90632 0.90563 0.91643 0.91969 0.91643 0.94001 0.94926 0.92738 0.88242 0.92575 0.89964 0.89498 0.92748 0.92727 0.92177 0.92597 0.90539 0.91188 0.92823 0.92614 0.91058 0.90920 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.81 37.16 0.36 -1.71 16 2 C -0.12 -1.66 5.65 -26.73 -0.15 -1.81 16 3 C 0.10 1.70 2.56 -26.74 -0.07 1.63 16 4 H 0.08 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.17 -2.55 9.55 37.15 0.35 -2.20 16 6 O -0.35 -7.30 8.25 -40.34 -0.33 -7.63 16 7 C 0.65 14.14 7.39 54.05 0.40 14.54 16 8 O -0.60 -13.07 12.75 -19.28 -0.25 -13.32 16 9 N -0.58 -12.55 2.32 -173.24 -0.40 -12.95 16 10 C 0.24 6.06 5.14 -5.19 -0.03 6.04 16 11 C -0.52 -14.14 9.39 -34.44 -0.32 -14.46 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.17 3.10 2.10 -67.94 -0.14 2.96 16 20 C -0.14 -2.25 5.08 -26.74 -0.14 -2.39 16 21 C -0.13 -1.77 5.33 -26.73 -0.14 -1.91 16 22 C -0.12 -1.42 5.71 -26.73 -0.15 -1.58 16 23 C -0.13 -1.68 5.48 -26.75 -0.15 -1.82 16 24 C -0.12 -1.58 5.47 -26.73 -0.15 -1.72 16 25 C -0.12 -1.84 5.59 -26.72 -0.15 -1.99 16 26 C -0.12 -2.15 4.11 -26.74 -0.11 -2.26 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 1.13 7.38 -51.93 -0.38 0.74 16 36 H 0.03 0.84 7.92 -51.93 -0.41 0.42 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.10 1.85 4.34 -51.93 -0.23 1.63 16 39 H 0.06 0.90 7.82 -51.93 -0.41 0.50 16 40 H 0.08 1.52 5.89 -51.93 -0.31 1.22 16 41 H 0.09 1.18 2.83 -51.93 -0.15 1.04 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 45 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.08 1.12 4.69 -51.93 -0.24 0.88 16 47 H 0.07 0.85 5.47 -51.93 -0.28 0.56 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 1.19 7.47 -51.92 -0.39 0.80 16 51 H 0.07 1.21 5.47 -51.93 -0.28 0.93 16 52 H 0.06 1.32 7.34 -51.93 -0.38 0.94 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -28.90 384.52 -9.40 -38.31 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -9.26 Total: 5.27 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.67 Total: -7.03 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.33 Total: -37.57 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.58 Total: -20.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.90 -9.40 -38.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195101822.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.702 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds