Wall clock time and date at job start Fri Apr 10 2020 22:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47222 * 2 1 4 4 H 1.08997 * 109.47417 * 54.99639 * 3 2 1 5 5 C 1.52994 * 109.47226 * 174.99613 * 3 2 1 6 6 O 1.45199 * 109.46770 * 294.99608 * 3 2 1 7 7 C 1.34645 * 117.00179 * 149.99923 * 6 3 2 8 8 O 1.21515 * 119.99521 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00369 * 179.97438 * 7 6 3 10 10 C 1.46504 * 120.00072 * 0.02562 * 9 7 6 11 11 C 1.50696 * 109.47242 * 269.99880 * 10 9 7 12 12 H 1.07999 * 120.00183 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99900 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99655 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46977 * 90.00319 * 15 13 11 17 17 H 1.48503 * 109.46879 * 209.99930 * 15 13 11 18 18 H 1.48499 * 109.47419 * 330.00139 * 15 13 11 19 19 C 1.46497 * 120.00289 * 180.02562 * 9 7 6 20 20 C 1.52993 * 109.46641 * 299.99278 * 19 9 7 21 21 C 1.52989 * 109.47372 * 164.01836 * 20 19 9 22 22 C 1.53013 * 109.46522 * 75.94240 * 21 20 19 23 23 C 1.52988 * 109.45936 * 284.05508 * 22 21 20 24 24 C 1.52982 * 109.49823 * 315.98779 * 23 22 21 25 25 C 1.53013 * 109.47549 * 112.94076 * 24 23 22 26 26 C 1.52987 * 109.46535 * 60.01253 * 19 9 7 27 27 H 1.08999 * 109.47400 * 300.00541 * 1 2 3 28 28 H 1.09003 * 109.46850 * 60.00183 * 1 2 3 29 29 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47400 * 239.99459 * 2 1 3 31 31 H 1.09002 * 109.46845 * 119.99267 * 2 1 3 32 32 H 1.09007 * 109.47071 * 60.00289 * 5 3 2 33 33 H 1.09003 * 109.47475 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47653 * 300.00178 * 5 3 2 35 35 H 1.09007 * 109.47025 * 30.00078 * 10 9 7 36 36 H 1.09001 * 109.47309 * 149.99407 * 10 9 7 37 37 H 0.96998 * 119.99968 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46725 * 180.02562 * 19 9 7 39 39 H 1.09004 * 109.46559 * 284.01342 * 20 19 9 40 40 H 1.09001 * 109.46935 * 44.01228 * 20 19 9 41 41 H 1.09003 * 109.46934 * 315.94761 * 21 20 19 42 42 H 1.09000 * 109.47592 * 195.94255 * 21 20 19 43 43 H 1.09003 * 109.47454 * 164.05727 * 22 21 20 44 44 H 1.08999 * 109.47727 * 44.05033 * 22 21 20 45 45 H 1.09008 * 109.46843 * 195.98116 * 23 22 21 46 46 H 1.08999 * 109.46323 * 75.99803 * 23 22 21 47 47 H 1.08995 * 109.47348 * 352.94003 * 24 23 22 48 48 H 1.09002 * 109.47182 * 232.93920 * 24 23 22 49 49 H 1.09004 * 109.47712 * 164.04965 * 25 24 23 50 50 H 1.09007 * 109.47336 * 44.03025 * 25 24 23 51 51 H 1.09000 * 109.46982 * 247.06801 * 26 19 9 52 52 H 1.08998 * 109.46663 * 7.07005 * 26 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1258 6 8 1.6560 2.0915 -1.2408 7 6 1.4462 3.4208 -1.1958 8 8 1.5809 4.0220 -0.1485 9 7 1.0879 4.0846 -2.3126 10 6 0.9260 3.3598 -3.5755 11 6 2.2397 3.3372 -4.3136 12 1 3.1082 3.8152 -3.8851 13 6 2.3328 2.7062 -5.5360 14 7 1.2754 2.1236 -6.0575 15 14 3.9611 2.6787 -6.4512 16 1 4.7339 1.4756 -6.0504 17 1 3.7062 2.6388 -7.9137 18 1 4.7374 3.8998 -6.1171 19 6 0.8601 5.5310 -2.2639 20 6 -0.2663 5.8367 -1.2748 21 6 -0.2436 7.3246 -0.9199 22 6 -0.8250 8.1347 -2.0806 23 6 0.2060 8.2227 -3.2074 24 6 1.5830 8.5315 -2.6167 25 6 2.5058 7.3276 -2.8173 26 6 2.1415 6.2338 -1.8114 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9995 0.9053 -0.7160 33 1 3.9283 2.4720 0.1254 34 1 3.8532 0.9570 1.0572 35 1 0.6072 2.3380 -3.3697 36 1 0.1742 3.8587 -4.1870 37 1 1.3409 1.6800 -6.9176 38 1 0.5800 5.8882 -3.2548 39 1 -1.2255 5.5859 -1.7279 40 1 -0.1260 5.2451 -0.3702 41 1 0.7840 7.6387 -0.7364 42 1 -0.8407 7.4937 -0.0238 43 1 -1.0724 9.1385 -1.7351 44 1 -1.7261 7.6451 -2.4500 45 1 -0.0787 9.0157 -3.8992 46 1 0.2439 7.2725 -3.7400 47 1 1.4831 8.7392 -1.5514 48 1 2.0067 9.4016 -3.1184 49 1 3.5407 7.6332 -2.6631 50 1 2.3872 6.9437 -3.8306 51 1 1.9835 6.6809 -0.8300 52 1 2.9529 5.5083 -1.7539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195101822.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:28 Heat of formation + Delta-G solvation = -112.246053 kcal Electronic energy + Delta-G solvation = -28865.473733 eV Core-core repulsion = 25249.978364 eV Total energy + Delta-G solvation = -3615.495369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77799 -40.18822 -37.97086 -36.55040 -34.90439 -34.64153 -33.79337 -32.55034 -30.88839 -29.10825 -27.19388 -26.81631 -25.22317 -24.69266 -23.06493 -22.80818 -21.66967 -20.86568 -20.27377 -18.81807 -18.36089 -17.75278 -17.12065 -16.90111 -16.33977 -16.07606 -15.43838 -15.22030 -14.99657 -14.92138 -14.73660 -14.65477 -14.31389 -14.24670 -14.01812 -13.76004 -13.50196 -13.33047 -13.23615 -12.94084 -12.70543 -12.67047 -12.60069 -12.44461 -12.21730 -12.15493 -12.04794 -11.79690 -11.72763 -11.64157 -11.62800 -11.55235 -11.44842 -11.26695 -11.19803 -10.91882 -10.61990 -10.54392 -9.45789 -8.19651 -6.32890 1.38112 1.38557 1.47295 1.52897 1.99553 2.39209 3.09491 3.14504 3.67119 3.75676 3.91793 3.98297 4.07569 4.12575 4.16709 4.23449 4.30227 4.33213 4.36787 4.39664 4.40021 4.57917 4.65515 4.70659 4.74347 4.84904 4.93632 4.94403 4.97674 5.00694 5.01710 5.03686 5.11633 5.12734 5.17425 5.18734 5.20192 5.22743 5.33942 5.35529 5.40535 5.45325 5.51392 5.58211 5.64974 5.69709 5.71591 5.91295 6.07482 6.58157 6.79865 7.34310 7.57038 8.86886 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.008781 B = 0.006601 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.980256 B = 4240.894343 C = 6300.363868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.090 3.910 4 H 0.076 0.924 5 C -0.161 4.161 6 O -0.369 6.369 7 C 0.645 3.355 8 O -0.604 6.604 9 N -0.583 5.583 10 C 0.263 3.737 11 C -0.535 4.535 12 H 0.048 0.952 13 C 0.019 3.981 14 N -0.922 5.922 15 Si 0.955 3.045 16 H -0.276 1.276 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.162 3.838 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.015 0.985 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.049 0.951 51 H 0.083 0.917 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 6.271 10.664 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.094 0.906 5 C -0.219 4.219 6 O -0.283 6.283 7 C 0.400 3.600 8 O -0.498 6.498 9 N -0.320 5.320 10 C 0.142 3.858 11 C -0.573 4.573 12 H 0.066 0.934 13 C -0.181 4.181 14 N -0.561 5.561 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.202 1.202 18 H -0.194 1.194 19 C 0.061 3.939 20 C -0.168 4.168 21 C -0.163 4.163 22 C -0.151 4.151 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.101 0.899 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.306 6.281 10.824 12.582 hybrid contribution 0.769 -0.541 -0.910 1.309 sum -0.537 5.739 9.913 11.468 Atomic orbital electron populations 1.21724 0.95428 1.02519 1.01056 1.21702 0.96703 0.92589 1.04123 1.22957 0.95990 0.93800 0.83793 0.90583 1.22156 0.94082 1.01893 1.03739 1.86488 1.81536 1.20797 1.39443 1.18170 0.76571 0.81206 0.84008 1.90798 1.60046 1.68499 1.30432 1.47422 1.68415 1.08492 1.07713 1.18935 0.96076 0.91114 0.79663 1.21575 0.96293 1.35383 1.04081 0.93399 1.25651 0.99854 0.94608 0.97939 1.70020 1.30558 1.36535 1.19022 0.85600 0.79888 0.78617 0.77867 1.20211 1.20167 1.19407 1.21522 0.95572 0.76331 1.00474 1.22024 0.96978 0.98579 0.99176 1.21971 1.03150 0.92560 0.98609 1.21621 0.97817 1.00515 0.95128 1.21888 0.95284 1.01507 0.98355 1.21775 0.94542 0.96885 1.02258 1.21710 0.99860 0.95658 0.98321 1.22011 0.95786 0.97376 0.99999 0.92280 0.95187 0.90475 0.91664 0.86627 0.92312 0.94188 0.87733 0.96664 0.96204 0.92412 0.88683 0.92739 0.92151 0.89436 0.91145 0.90161 0.92375 0.90895 0.93131 0.90011 0.90888 0.91657 0.93213 0.89906 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.81 71.98 0.71 -3.33 16 2 C -0.11 -3.04 5.65 30.59 0.17 -2.87 16 3 C 0.09 3.03 2.56 30.59 0.08 3.10 16 4 H 0.08 2.59 7.16 -2.39 -0.02 2.57 16 5 C -0.16 -4.85 9.55 71.98 0.69 -4.17 16 6 O -0.37 -16.33 8.25 -55.54 -0.46 -16.79 16 7 C 0.65 29.47 7.39 129.79 0.96 30.43 16 8 O -0.60 -27.11 12.75 19.79 0.25 -26.86 16 9 N -0.58 -26.74 2.32 -932.41 -2.16 -28.90 16 10 C 0.26 13.85 5.14 85.63 0.44 14.29 16 11 C -0.53 -29.89 9.39 25.60 0.24 -29.65 16 12 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 13 C 0.02 1.07 5.46 84.66 0.46 1.53 16 14 N -0.92 -53.42 13.29 21.45 0.28 -53.13 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 C 0.16 6.19 2.10 44.99 0.09 6.28 16 20 C -0.13 -4.29 5.08 30.59 0.16 -4.13 16 21 C -0.13 -3.16 5.33 30.60 0.16 -3.00 16 22 C -0.11 -2.48 5.71 30.59 0.17 -2.30 16 23 C -0.13 -3.17 5.48 30.58 0.17 -3.00 16 24 C -0.12 -2.71 5.47 30.59 0.17 -2.55 16 25 C -0.12 -3.53 5.59 30.60 0.17 -3.36 16 26 C -0.11 -4.04 4.11 30.59 0.13 -3.92 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 0.88 7.38 -2.38 -0.02 0.86 16 36 H 0.02 1.08 7.92 -2.39 -0.02 1.06 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.10 3.72 4.34 -2.39 -0.01 3.71 16 39 H 0.05 1.79 7.82 -2.38 -0.02 1.77 16 40 H 0.06 2.28 5.89 -2.39 -0.01 2.26 16 41 H 0.09 2.21 2.83 -2.39 -0.01 2.20 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 45 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.05 1.48 4.69 -2.39 -0.01 1.47 16 47 H 0.08 1.73 5.47 -2.39 -0.01 1.72 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.05 1.70 7.47 -2.38 -0.02 1.68 16 51 H 0.08 2.74 5.47 -2.39 -0.01 2.73 16 52 H 0.03 1.22 7.34 -2.39 -0.02 1.20 16 Total: -1.00 -64.71 384.52 5.79 -58.92 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.88 Total: 27.50 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.97 Total: -6.63 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.88 Total: -82.03 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.21 Total: -43.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.71 5.79 -58.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195101822.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.329 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds