Wall clock time and date at job start Fri Apr 10 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 C 1.52994 * 109.47723 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47407 * 180.02562 * 4 3 2 6 6 C 1.46906 * 110.99859 * 66.04785 * 5 4 3 7 7 C 1.50697 * 109.47475 * 62.74741 * 6 5 4 8 8 H 1.07996 * 119.99759 * 5.04192 * 7 6 5 9 9 C 1.37872 * 119.99873 * 185.04724 * 7 6 5 10 10 N 1.31519 * 119.99715 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00276 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46928 * 89.99930 * 11 9 7 13 13 H 1.48501 * 109.47044 * 210.00297 * 11 9 7 14 14 H 1.48496 * 109.46617 * 330.00093 * 11 9 7 15 15 C 1.46899 * 110.99927 * 189.99516 * 5 4 3 16 16 C 1.53000 * 109.46874 * 164.11673 * 15 5 4 17 17 H 1.09001 * 109.47017 * 56.85173 * 16 15 5 18 18 C 1.53003 * 109.47257 * 176.84996 * 16 15 5 19 19 C 1.53000 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46978 * 299.99663 * 19 18 16 21 21 H 1.08990 * 109.47805 * 300.00584 * 20 19 18 22 22 C 1.50701 * 109.46840 * 179.97438 * 20 19 18 23 23 O 1.20827 * 120.00355 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99934 * 180.02562 * 22 20 19 25 25 C 1.45202 * 117.00192 * 180.02562 * 24 22 20 26 26 C 1.53004 * 109.46726 * 60.00634 * 20 19 18 27 27 C 1.52994 * 109.47395 * 296.84983 * 16 15 5 28 28 H 1.09000 * 109.47244 * 299.99544 * 1 2 3 29 29 H 1.09001 * 109.47045 * 60.00056 * 1 2 3 30 30 H 1.09007 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47140 * 239.99923 * 2 1 3 32 32 H 1.09001 * 109.47045 * 119.99944 * 2 1 3 33 33 H 1.09000 * 109.46989 * 300.00760 * 3 2 1 34 34 H 1.09003 * 109.47055 * 59.99872 * 3 2 1 35 35 H 1.09001 * 109.46786 * 300.00007 * 4 3 2 36 36 H 1.08993 * 109.47144 * 59.99621 * 4 3 2 37 37 H 1.09004 * 109.46607 * 182.74781 * 6 5 4 38 38 H 1.09000 * 109.47091 * 302.74167 * 6 5 4 39 39 H 0.97000 * 119.99712 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.47684 * 284.11989 * 15 5 4 41 41 H 1.09000 * 109.46932 * 44.12376 * 15 5 4 42 42 H 1.09001 * 109.47369 * 300.00373 * 18 16 15 43 43 H 1.09001 * 109.46962 * 60.00144 * 18 16 15 44 44 H 1.09001 * 109.47017 * 60.00177 * 19 18 16 45 45 H 1.08997 * 109.46713 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.47146 * 59.98977 * 25 24 22 47 47 H 1.08998 * 109.47713 * 179.97438 * 25 24 22 48 48 H 1.09006 * 109.46946 * 299.99561 * 25 24 22 49 49 H 1.09001 * 109.47471 * 59.99362 * 26 20 19 50 50 H 1.09008 * 109.46990 * 179.97438 * 26 20 19 51 51 H 1.09001 * 109.47193 * 300.00082 * 27 16 15 52 52 H 1.09009 * 109.47036 * 59.99867 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7106 3.5087 1.2539 7 6 4.3882 2.8154 2.4077 8 1 5.0790 2.0065 2.2212 9 6 4.1260 3.2137 3.7013 10 7 4.7170 2.6082 4.7083 11 14 2.9315 4.6132 4.0239 12 1 1.5592 4.0671 4.1777 13 1 3.3245 5.3225 5.2680 14 1 2.9615 5.5624 2.8823 15 6 5.5083 2.8738 -0.2386 16 6 5.9166 4.2973 -0.6231 17 1 5.6094 4.9880 0.1622 18 6 7.4355 4.3634 -0.7950 19 6 7.8438 5.7871 -1.1788 20 6 7.1644 6.1756 -2.4935 21 1 7.4714 5.4853 -3.2791 22 6 7.5662 7.5781 -2.8712 23 8 8.3190 8.2027 -2.1620 24 8 7.0876 8.1335 -3.9956 25 6 7.5176 9.4873 -4.2969 26 6 5.6455 6.1096 -2.3215 27 6 5.2372 4.6853 -1.9379 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9336 0.9286 0.8891 36 1 3.9329 0.9288 -0.8908 37 1 4.0420 4.5461 1.2081 38 1 2.6303 3.4783 1.3954 39 1 4.5328 2.8887 5.6184 40 1 6.0356 2.5769 0.6679 41 1 5.7651 2.1910 -1.0485 42 1 7.9196 4.0870 0.1417 43 1 7.7426 3.6727 -1.5804 44 1 7.5367 6.4775 -0.3932 45 1 8.9258 5.8340 -1.3018 46 1 8.6027 9.5099 -4.3977 47 1 7.0593 9.8150 -5.2300 48 1 7.2138 10.1532 -3.4891 49 1 5.3384 6.7999 -1.5359 50 1 5.1614 6.3868 -3.2580 51 1 5.5443 3.9946 -2.7232 52 1 4.1550 4.6382 -1.8154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208631198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:32 Heat of formation + Delta-G solvation = -121.959606 kcal Electronic energy + Delta-G solvation = -27153.798923 eV Core-core repulsion = 23537.882342 eV Total energy + Delta-G solvation = -3615.916581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75808 -38.63942 -37.03719 -36.37832 -34.26831 -32.49374 -31.59058 -30.56349 -28.63672 -28.13248 -27.13990 -24.88214 -23.06270 -22.52004 -22.36220 -20.97610 -20.16455 -19.55717 -19.03920 -17.59347 -16.92757 -16.77491 -16.48013 -15.21979 -15.10117 -14.56224 -14.25660 -14.21549 -14.02470 -13.82004 -13.63382 -13.35471 -13.10577 -12.69613 -12.55721 -12.46806 -12.21259 -12.09200 -12.01121 -11.78913 -11.41508 -11.30349 -11.22199 -10.98368 -10.92647 -10.81522 -10.73846 -10.64855 -10.47111 -10.40757 -10.25760 -10.20589 -9.90787 -9.80945 -9.67647 -9.60134 -9.45106 -8.56351 -7.12163 -6.09423 -4.07701 2.12856 2.61640 3.27271 3.35749 3.39197 4.40379 4.54807 4.73689 4.76822 4.85703 4.89833 4.97476 5.18774 5.25143 5.32534 5.34859 5.36466 5.39015 5.52444 5.53353 5.53999 5.65427 5.73751 5.76206 5.88384 6.00328 6.10516 6.12004 6.15367 6.16586 6.22046 6.25120 6.30887 6.32780 6.37228 6.41623 6.47246 6.49120 6.56980 6.73978 6.84767 6.90293 6.90713 6.96692 7.01071 7.18798 7.61114 7.66075 8.10347 8.18441 8.46700 8.93574 9.54459 11.03682 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003550 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.927777 B = 7884.761750 C = 9061.230762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.061 3.939 5 N -0.533 5.533 6 C 0.151 3.849 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.874 3.126 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.063 3.937 16 C -0.082 4.082 17 H 0.076 0.924 18 C -0.112 4.112 19 C -0.101 4.101 20 C -0.076 4.076 21 H 0.107 0.893 22 C 0.464 3.536 23 O -0.509 6.509 24 O -0.359 6.359 25 C 0.034 3.966 26 C -0.111 4.111 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 5.077 -17.521 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.067 4.067 5 N -0.256 5.256 6 C 0.024 3.976 7 C -0.583 4.583 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.539 5.539 11 Si 0.701 3.299 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.189 1.189 15 C -0.065 4.065 16 C -0.101 4.101 17 H 0.095 0.905 18 C -0.150 4.150 19 C -0.139 4.139 20 C -0.096 4.096 21 H 0.125 0.875 22 C 0.307 3.693 23 O -0.396 6.396 24 O -0.276 6.276 25 C -0.060 4.060 26 C -0.148 4.148 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.108 5.553 -17.517 18.409 hybrid contribution -0.031 0.562 1.124 1.257 sum 1.077 6.115 -16.393 17.529 Atomic orbital electron populations 1.21753 0.96503 1.00819 1.01599 1.21478 0.95237 0.97806 1.01519 1.21532 0.95850 0.95443 1.02060 1.21918 0.94552 0.90491 0.99748 1.62429 1.12403 1.14731 1.36049 1.20208 0.96105 0.94769 0.86483 1.21641 1.26986 1.19216 0.90423 0.90787 1.24934 0.95644 0.96127 0.96231 1.69926 1.43325 1.41609 0.99012 0.86872 0.81748 0.83242 0.78023 1.20262 1.21411 1.18868 1.21968 0.89783 0.95111 0.99643 1.21136 0.93270 0.98147 0.97526 0.90550 1.21558 0.96670 0.95029 1.01700 1.21441 0.99716 0.97902 0.94792 1.21202 0.99102 0.88901 1.00344 0.87548 1.24137 0.77253 0.89905 0.78023 1.90656 1.33943 1.63742 1.51261 1.86530 1.67496 1.31297 1.42287 1.23237 1.00707 0.80230 1.01802 1.21605 0.91356 0.99743 1.02144 1.21474 1.02019 0.93453 0.96835 0.92804 0.93119 0.93395 0.92719 0.92059 0.92467 0.91515 0.93457 0.93271 0.95524 0.95669 0.92780 0.92897 0.93146 0.91111 0.92166 0.90970 0.91520 0.92087 0.88243 0.91975 0.91584 0.91123 0.92493 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.52 16 2 C -0.12 -1.76 5.93 -26.74 -0.16 -1.91 16 3 C -0.11 -1.86 5.14 -26.74 -0.14 -1.99 16 4 C 0.06 1.12 4.77 -3.83 -0.02 1.10 16 5 N -0.53 -10.26 4.04 -236.08 -0.95 -11.21 16 6 C 0.15 3.45 3.83 -4.97 -0.02 3.43 16 7 C -0.54 -14.55 7.89 -34.44 -0.27 -14.82 16 8 H 0.07 2.16 6.20 -52.49 -0.33 1.84 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 11 Si 0.87 21.26 27.37 -169.99 -4.65 16.61 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.26 -6.19 6.69 56.52 0.38 -5.82 16 15 C 0.06 1.12 4.21 -3.82 -0.02 1.11 16 16 C -0.08 -1.27 2.18 -90.62 -0.20 -1.47 16 17 H 0.08 1.39 6.63 -51.93 -0.34 1.04 16 18 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 19 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 20 C -0.08 -0.89 2.63 -91.77 -0.24 -1.13 16 21 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 22 C 0.46 5.97 7.25 36.01 0.26 6.23 16 23 O -0.51 -7.90 15.73 -18.75 -0.29 -8.19 16 24 O -0.36 -4.07 10.47 -39.25 -0.41 -4.48 16 25 C 0.03 0.29 10.56 101.05 1.07 1.35 16 26 C -0.11 -1.32 5.14 -26.70 -0.14 -1.46 16 27 C -0.10 -1.33 5.08 -26.71 -0.14 -1.46 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.27 6.50 -51.93 -0.34 0.93 16 35 H 0.05 1.01 6.58 -51.93 -0.34 0.67 16 36 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 37 H 0.03 0.63 6.01 -51.93 -0.31 0.32 16 38 H 0.03 0.59 5.50 -51.93 -0.29 0.30 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.05 1.11 6.16 -51.93 -0.32 0.79 16 41 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 45 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.07 0.75 8.11 -51.92 -0.42 0.33 16 51 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.08 1.20 7.70 -51.92 -0.40 0.80 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -30.21 395.70 -9.39 -39.59 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -9.82 Total: 1.64 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.01 Total: -13.64 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.18 Total: -37.50 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.71 Total: -12.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.21 -9.39 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208631198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.366 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds