Wall clock time and date at job start Fri Apr 10 2020 22:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 C 1.52994 * 109.47723 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47407 * 180.02562 * 4 3 2 6 6 C 1.46906 * 110.99859 * 66.04785 * 5 4 3 7 7 C 1.50697 * 109.47475 * 62.74741 * 6 5 4 8 8 H 1.07996 * 119.99759 * 5.04192 * 7 6 5 9 9 C 1.37872 * 119.99873 * 185.04724 * 7 6 5 10 10 N 1.31519 * 119.99715 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00276 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46928 * 89.99930 * 11 9 7 13 13 H 1.48501 * 109.47044 * 210.00297 * 11 9 7 14 14 H 1.48496 * 109.46617 * 330.00093 * 11 9 7 15 15 C 1.46899 * 110.99927 * 189.99516 * 5 4 3 16 16 C 1.53000 * 109.46874 * 164.11673 * 15 5 4 17 17 H 1.09001 * 109.47017 * 56.85173 * 16 15 5 18 18 C 1.53003 * 109.47257 * 176.84996 * 16 15 5 19 19 C 1.53000 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46978 * 299.99663 * 19 18 16 21 21 H 1.08990 * 109.47805 * 300.00584 * 20 19 18 22 22 C 1.50701 * 109.46840 * 179.97438 * 20 19 18 23 23 O 1.20827 * 120.00355 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99934 * 180.02562 * 22 20 19 25 25 C 1.45202 * 117.00192 * 180.02562 * 24 22 20 26 26 C 1.53004 * 109.46726 * 60.00634 * 20 19 18 27 27 C 1.52994 * 109.47395 * 296.84983 * 16 15 5 28 28 H 1.09000 * 109.47244 * 299.99544 * 1 2 3 29 29 H 1.09001 * 109.47045 * 60.00056 * 1 2 3 30 30 H 1.09007 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47140 * 239.99923 * 2 1 3 32 32 H 1.09001 * 109.47045 * 119.99944 * 2 1 3 33 33 H 1.09000 * 109.46989 * 300.00760 * 3 2 1 34 34 H 1.09003 * 109.47055 * 59.99872 * 3 2 1 35 35 H 1.09001 * 109.46786 * 300.00007 * 4 3 2 36 36 H 1.08993 * 109.47144 * 59.99621 * 4 3 2 37 37 H 1.09004 * 109.46607 * 182.74781 * 6 5 4 38 38 H 1.09000 * 109.47091 * 302.74167 * 6 5 4 39 39 H 0.97000 * 119.99712 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.47684 * 284.11989 * 15 5 4 41 41 H 1.09000 * 109.46932 * 44.12376 * 15 5 4 42 42 H 1.09001 * 109.47369 * 300.00373 * 18 16 15 43 43 H 1.09001 * 109.46962 * 60.00144 * 18 16 15 44 44 H 1.09001 * 109.47017 * 60.00177 * 19 18 16 45 45 H 1.08997 * 109.46713 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.47146 * 59.98977 * 25 24 22 47 47 H 1.08998 * 109.47713 * 179.97438 * 25 24 22 48 48 H 1.09006 * 109.46946 * 299.99561 * 25 24 22 49 49 H 1.09001 * 109.47471 * 59.99362 * 26 20 19 50 50 H 1.09008 * 109.46990 * 179.97438 * 26 20 19 51 51 H 1.09001 * 109.47193 * 300.00082 * 27 16 15 52 52 H 1.09009 * 109.47036 * 59.99867 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7106 3.5087 1.2539 7 6 4.3882 2.8154 2.4077 8 1 5.0790 2.0065 2.2212 9 6 4.1260 3.2137 3.7013 10 7 4.7170 2.6082 4.7083 11 14 2.9315 4.6132 4.0239 12 1 1.5592 4.0671 4.1777 13 1 3.3245 5.3225 5.2680 14 1 2.9615 5.5624 2.8823 15 6 5.5083 2.8738 -0.2386 16 6 5.9166 4.2973 -0.6231 17 1 5.6094 4.9880 0.1622 18 6 7.4355 4.3634 -0.7950 19 6 7.8438 5.7871 -1.1788 20 6 7.1644 6.1756 -2.4935 21 1 7.4714 5.4853 -3.2791 22 6 7.5662 7.5781 -2.8712 23 8 8.3190 8.2027 -2.1620 24 8 7.0876 8.1335 -3.9956 25 6 7.5176 9.4873 -4.2969 26 6 5.6455 6.1096 -2.3215 27 6 5.2372 4.6853 -1.9379 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9336 0.9286 0.8891 36 1 3.9329 0.9288 -0.8908 37 1 4.0420 4.5461 1.2081 38 1 2.6303 3.4783 1.3954 39 1 4.5328 2.8887 5.6184 40 1 6.0356 2.5769 0.6679 41 1 5.7651 2.1910 -1.0485 42 1 7.9196 4.0870 0.1417 43 1 7.7426 3.6727 -1.5804 44 1 7.5367 6.4775 -0.3932 45 1 8.9258 5.8340 -1.3018 46 1 8.6027 9.5099 -4.3977 47 1 7.0593 9.8150 -5.2300 48 1 7.2138 10.1532 -3.4891 49 1 5.3384 6.7999 -1.5359 50 1 5.1614 6.3868 -3.2580 51 1 5.5443 3.9946 -2.7232 52 1 4.1550 4.6382 -1.8154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208631198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:31 Heat of formation + Delta-G solvation = -138.355846 kcal Electronic energy + Delta-G solvation = -27154.509917 eV Core-core repulsion = 23537.882342 eV Total energy + Delta-G solvation = -3616.627575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73640 -39.90804 -38.35354 -37.42308 -35.57353 -34.50770 -32.86206 -31.62816 -30.19566 -29.31520 -28.34285 -26.18331 -24.82208 -23.64197 -23.44787 -22.13574 -21.36446 -20.85972 -20.51465 -18.96854 -18.55603 -17.72209 -17.41818 -16.69132 -16.53842 -16.26327 -15.67013 -15.54827 -15.13191 -14.95301 -14.77226 -14.50371 -14.46434 -14.12096 -13.91172 -13.68595 -13.35398 -13.29411 -13.14331 -13.04988 -12.88757 -12.71224 -12.59333 -12.31904 -12.26228 -12.02493 -11.95248 -11.90872 -11.81004 -11.77541 -11.72805 -11.54826 -11.43187 -11.23675 -11.14813 -10.93807 -10.85497 -10.71528 -8.85375 -8.29798 -6.31447 1.15031 1.31637 1.33934 1.44678 1.77020 2.32943 3.06596 3.31610 3.61270 3.75822 3.81571 4.10299 4.17625 4.20144 4.26418 4.32030 4.32326 4.35203 4.39602 4.44054 4.54799 4.61113 4.64759 4.65493 4.70849 4.77371 4.81723 4.92196 4.98952 5.00347 5.06587 5.08871 5.14139 5.18074 5.19744 5.22021 5.22802 5.26574 5.29544 5.36125 5.39075 5.44370 5.49453 5.57670 5.62192 5.67835 5.70900 6.16273 6.42214 6.57244 6.71620 6.75876 7.34367 8.86694 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003550 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.927777 B = 7884.761750 C = 9061.230762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.105 4.105 4 C 0.062 3.938 5 N -0.521 5.521 6 C 0.163 3.837 7 C -0.534 4.534 8 H 0.036 0.964 9 C 0.012 3.988 10 N -0.949 5.949 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.248 1.248 15 C 0.066 3.934 16 C -0.078 4.078 17 H 0.041 0.959 18 C -0.105 4.105 19 C -0.096 4.096 20 C -0.071 4.071 21 H 0.137 0.863 22 C 0.466 3.534 23 O -0.543 6.543 24 O -0.359 6.359 25 C 0.026 3.974 26 C -0.104 4.104 27 C -0.091 4.091 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.010 0.990 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.133 0.867 48 H 0.056 0.944 49 H 0.048 0.952 50 H 0.092 0.908 51 H 0.080 0.920 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 5.700 -21.080 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.066 4.066 5 N -0.243 5.243 6 C 0.035 3.965 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.185 4.185 10 N -0.590 5.590 11 Si 0.761 3.239 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.172 1.172 15 C -0.063 4.063 16 C -0.097 4.097 17 H 0.060 0.940 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.090 4.090 21 H 0.154 0.846 22 C 0.311 3.689 23 O -0.433 6.433 24 O -0.275 6.275 25 C -0.067 4.067 26 C -0.141 4.141 27 C -0.128 4.128 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.151 0.849 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.111 0.889 51 H 0.099 0.901 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.152 6.177 -21.114 21.999 hybrid contribution 0.437 0.310 2.172 2.237 sum 0.285 6.486 -18.942 20.024 Atomic orbital electron populations 1.21730 0.94884 1.02017 1.01748 1.21456 0.96654 0.96034 1.01611 1.21486 0.94349 0.97055 1.01402 1.21995 0.95929 0.89563 0.99141 1.62488 1.13377 1.15133 1.33329 1.19988 0.95519 0.94410 0.86551 1.21875 1.25686 1.17863 0.91885 0.94600 1.25801 0.97684 0.98930 0.96085 1.70076 1.45611 1.43845 0.99503 0.85864 0.79617 0.80247 0.78217 1.19169 1.21375 1.17186 1.22021 0.88303 0.97303 0.98641 1.21073 0.94960 0.95621 0.98083 0.94028 1.21482 0.94937 0.96134 1.01704 1.21342 1.00204 0.96728 0.95117 1.21187 0.98613 0.89047 1.00172 0.84574 1.24298 0.76535 0.90072 0.77979 1.90650 1.35633 1.64614 1.52385 1.86513 1.67133 1.32622 1.41246 1.23536 1.01255 0.78713 1.03167 1.21529 0.91618 0.98406 1.02564 1.21372 1.00926 0.94799 0.95694 0.93947 0.91678 0.91726 0.90664 0.93938 0.90676 0.94407 0.97464 0.90416 0.95862 0.95515 0.92797 0.97134 0.90416 0.93138 0.89497 0.93433 0.90970 0.91966 0.84891 0.92513 0.93320 0.88939 0.90092 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.26 5.93 30.59 0.18 -3.07 16 3 C -0.11 -3.40 5.14 30.59 0.16 -3.24 16 4 C 0.06 2.25 4.77 86.30 0.41 2.66 16 5 N -0.52 -19.96 4.04 -900.81 -3.64 -23.60 16 6 C 0.16 7.56 3.83 85.55 0.33 7.89 16 7 C -0.53 -29.92 7.89 25.60 0.20 -29.72 16 8 H 0.04 2.25 6.20 -2.91 -0.02 2.23 16 9 C 0.01 0.73 5.47 84.65 0.46 1.19 16 10 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 11 Si 0.94 44.64 27.37 68.60 1.88 46.52 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.25 -11.10 6.69 99.48 0.67 -10.43 16 15 C 0.07 2.33 4.21 86.30 0.36 2.69 16 16 C -0.08 -2.40 2.18 -10.79 -0.02 -2.42 16 17 H 0.04 1.56 6.63 -2.39 -0.02 1.54 16 18 C -0.10 -2.75 5.20 30.60 0.16 -2.59 16 19 C -0.10 -2.41 4.49 30.59 0.14 -2.27 16 20 C -0.07 -1.49 2.63 -11.54 -0.03 -1.52 16 21 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 22 C 0.47 11.18 7.25 71.24 0.52 11.70 16 23 O -0.54 -16.53 15.73 21.96 0.35 -16.18 16 24 O -0.36 -7.19 10.47 -51.40 -0.54 -7.73 16 25 C 0.03 0.38 10.56 113.37 1.20 1.58 16 26 C -0.10 -2.21 5.14 30.61 0.16 -2.05 16 27 C -0.09 -2.16 5.08 30.61 0.16 -2.00 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.43 6.50 -2.39 -0.02 1.42 16 35 H 0.01 0.31 6.58 -2.39 -0.02 0.30 16 36 H 0.08 2.38 7.86 -2.39 -0.02 2.37 16 37 H 0.02 1.11 6.01 -2.39 -0.01 1.09 16 38 H 0.03 1.25 5.50 -2.39 -0.01 1.24 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.01 0.46 6.16 -2.39 -0.01 0.44 16 41 H 0.08 2.34 7.81 -2.39 -0.02 2.32 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 45 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 46 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 47 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 49 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.09 1.63 8.11 -2.38 -0.02 1.61 16 51 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.07 1.89 7.70 -2.38 -0.02 1.88 16 Total: -1.00 -69.34 395.70 4.25 -65.09 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.82 Total: 19.09 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 5.09 Total: -23.86 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.34 Total: -82.93 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.19 Total: -23.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -69.34 4.25 -65.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208631198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.266 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds