Wall clock time and date at job start Fri Apr 10 2020 22:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47272 * 2 1 4 4 C 1.53001 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.46912 * 181.41754 * 4 3 2 6 6 C 1.46901 * 111.00331 * 62.12195 * 5 4 3 7 7 C 1.50706 * 109.47238 * 66.04181 * 6 5 4 8 8 H 1.08003 * 119.99728 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00134 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99875 * 179.72748 * 9 7 6 12 12 H 1.48503 * 109.46775 * 180.27678 * 11 9 7 13 13 H 1.48503 * 109.47056 * 300.27529 * 11 9 7 14 14 H 1.48497 * 109.47116 * 60.27352 * 11 9 7 15 15 C 1.46897 * 111.00400 * 298.16901 * 5 4 3 16 16 C 1.53004 * 109.47001 * 288.31462 * 15 5 4 17 17 H 1.09009 * 110.85966 * 54.40574 * 16 15 5 18 18 C 1.54920 * 110.98130 * 178.21617 * 16 15 5 19 19 O 1.44204 * 103.08115 * 153.64286 * 18 16 15 20 20 C 1.43313 * 107.26270 * 338.58427 * 19 18 16 21 21 C 1.52945 * 109.64732 * 239.62378 * 20 19 18 22 22 C 1.53018 * 109.45666 * 299.10799 * 21 20 19 23 23 C 1.52997 * 109.47229 * 300.22513 * 22 21 20 24 24 C 1.53000 * 109.49136 * 60.16349 * 23 22 21 25 25 C 1.52958 * 109.62717 * 118.97934 * 20 19 18 26 26 O 1.43703 * 108.85575 * 359.32103 * 20 19 18 27 27 H 1.09001 * 109.47605 * 300.00166 * 1 2 3 28 28 H 1.09009 * 109.47122 * 60.00007 * 1 2 3 29 29 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47175 * 239.99535 * 2 1 3 31 31 H 1.09001 * 109.47318 * 120.00207 * 2 1 3 32 32 H 1.08996 * 109.46815 * 59.99852 * 3 2 1 33 33 H 1.08996 * 109.46980 * 299.99882 * 3 2 1 34 34 H 1.08994 * 109.47072 * 61.41700 * 4 3 2 35 35 H 1.09001 * 109.47057 * 301.41394 * 4 3 2 36 36 H 1.09005 * 109.47143 * 306.04709 * 6 5 4 37 37 H 1.08999 * 109.47788 * 186.04685 * 6 5 4 38 38 H 0.97000 * 119.99829 * 359.72310 * 10 9 7 39 39 H 1.09001 * 109.46827 * 48.30815 * 15 5 4 40 40 H 1.08998 * 109.48014 * 168.31523 * 15 5 4 41 41 H 1.09008 * 110.69392 * 272.04157 * 18 16 15 42 42 H 1.08998 * 110.68744 * 35.24186 * 18 16 15 43 43 H 1.09003 * 109.47512 * 59.09696 * 21 20 19 44 44 H 1.08993 * 109.47726 * 179.11111 * 21 20 19 45 45 H 1.09005 * 109.47199 * 180.22841 * 22 21 20 46 46 H 1.09000 * 109.47376 * 60.22746 * 22 21 20 47 47 H 1.08998 * 109.46733 * 300.16736 * 23 22 21 48 48 H 1.08996 * 109.46660 * 180.16687 * 23 22 21 49 49 H 1.08999 * 109.47707 * 179.82996 * 24 23 22 50 50 H 1.09005 * 109.47182 * 59.82603 * 24 23 22 51 51 H 1.09000 * 109.47653 * 180.88828 * 25 20 19 52 52 H 1.08997 * 109.47682 * 300.90161 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8270 0.0336 6 6 3.6311 3.5067 1.2633 7 6 4.2963 2.8616 2.4519 8 1 4.9703 2.0301 2.3080 9 6 4.0443 3.3329 3.7229 10 7 3.2232 4.3452 3.8981 11 14 4.8629 2.5284 5.1967 12 1 4.4250 3.2117 6.4403 13 1 4.4765 1.0958 5.2566 14 1 6.3380 2.6380 5.0646 15 6 3.6243 3.5690 -1.1570 16 6 4.3977 3.0707 -2.3796 17 1 4.2997 1.9904 -2.4870 18 6 3.9334 3.8003 -3.6649 19 8 5.0934 3.7277 -4.5185 20 6 6.2301 3.5088 -3.6737 21 6 7.2283 4.6545 -3.8475 22 6 7.7012 4.7022 -5.3020 23 6 8.3720 3.3756 -5.6639 24 6 7.3684 2.2332 -5.4950 25 6 6.8950 2.1811 -4.0408 26 8 5.7902 3.4609 -2.3065 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9329 0.9509 -0.9032 35 1 3.9337 0.9067 0.8762 36 1 2.5488 3.4262 1.3647 37 1 3.9142 4.5582 1.2149 38 1 2.7979 4.7627 3.1328 39 1 2.5571 3.4115 -1.3133 40 1 3.8175 4.6321 -1.0136 41 1 3.0884 3.2818 -4.1183 42 1 3.6788 4.8378 -3.4482 43 1 6.7467 5.5981 -3.5910 44 1 8.0842 4.4934 -3.1922 45 1 8.4157 5.5161 -5.4253 46 1 6.8458 4.8674 -5.9570 47 1 9.2257 3.2091 -5.0070 48 1 8.7115 3.4108 -6.6991 49 1 7.8456 1.2886 -5.7558 50 1 6.5131 2.4011 -6.1497 51 1 7.7497 2.0096 -3.3865 52 1 6.1771 1.3698 -3.9212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208637948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:36 Heat of formation + Delta-G solvation = -117.066040 kcal Electronic energy + Delta-G solvation = -27838.477501 eV Core-core repulsion = 24222.773121 eV Total energy + Delta-G solvation = -3615.704380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.81718 -37.95789 -36.82545 -34.81967 -34.03372 -32.83919 -31.07996 -30.90690 -28.64016 -28.21198 -26.41143 -24.47285 -23.50963 -22.89938 -22.13227 -21.62977 -21.26745 -19.68124 -19.35437 -17.18319 -16.72273 -16.51631 -15.41816 -15.38381 -15.15968 -14.87476 -14.50771 -14.36899 -13.95368 -13.70187 -13.61999 -13.47029 -13.24909 -12.81587 -12.72105 -12.57568 -12.37423 -12.29377 -12.14201 -11.98565 -11.40916 -11.31370 -11.27424 -11.08355 -11.02943 -10.87815 -10.78844 -10.69988 -10.68781 -10.57893 -10.45789 -10.30338 -10.05839 -10.01034 -9.80412 -9.29995 -8.64095 -8.34625 -7.24436 -6.33929 -4.01973 3.45804 3.47196 3.48666 3.66677 4.00337 4.37974 4.57362 4.62422 4.63448 4.82125 4.94078 5.01904 5.07892 5.12295 5.20397 5.22819 5.29585 5.35778 5.40554 5.41794 5.43007 5.47977 5.48709 5.57882 5.60798 5.70073 5.77633 5.84691 5.90356 5.94000 6.01054 6.02028 6.04644 6.07428 6.09073 6.10729 6.18669 6.22124 6.25595 6.33173 6.34976 6.45749 6.60977 6.81441 7.07654 7.13541 7.29214 7.79596 7.99972 8.33563 8.61369 8.89898 9.67694 11.05152 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003747 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.835131 B = 7470.280243 C = 8720.398407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.064 3.936 5 N -0.519 5.519 6 C 0.181 3.819 7 C -0.582 4.582 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.916 5.916 11 Si 1.070 2.930 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.055 3.945 16 C 0.059 3.941 17 H 0.080 0.920 18 C 0.023 3.977 19 O -0.378 6.378 20 C 0.254 3.746 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.135 4.135 26 O -0.345 6.345 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.084 0.916 36 H -0.012 1.012 37 H 0.017 0.983 38 H 0.266 0.734 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -4.148 -18.846 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.241 5.241 6 C 0.056 3.944 7 C -0.621 4.621 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.553 5.553 11 Si 0.898 3.102 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.074 4.074 16 C 0.001 3.999 17 H 0.097 0.903 18 C -0.054 4.054 19 O -0.299 6.299 20 C 0.177 3.823 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.173 4.173 26 O -0.265 6.265 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.005 0.995 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.391 -4.013 -17.202 17.987 hybrid contribution -1.186 -0.085 -1.615 2.006 sum 2.206 -4.098 -18.818 19.385 Atomic orbital electron populations 1.21769 0.96485 1.00921 1.01594 1.21416 0.95286 0.97280 1.01562 1.22264 0.98932 0.96613 1.01921 1.22094 0.91412 0.91441 1.01448 1.62192 1.58750 1.01496 1.01673 1.19886 0.93699 0.94128 0.86705 1.21933 1.29472 1.18999 0.91694 0.92581 1.25794 0.96420 0.96050 1.00629 1.70802 1.28118 1.21907 1.34432 0.83523 0.75787 0.75335 0.75516 1.20902 1.21528 1.21394 1.22085 0.95556 0.99317 0.90411 1.23963 0.81771 0.99080 0.95037 0.90257 1.24203 0.89439 1.01358 0.90399 1.88820 1.15601 1.93722 1.31731 1.23268 0.87246 0.94620 0.77203 1.21777 0.98525 0.97804 0.97582 1.21446 1.00427 0.97320 0.95831 1.21568 0.98232 0.94911 1.01155 1.21442 0.99200 0.98309 0.96129 1.22098 1.01106 0.96575 0.97493 1.89449 1.24827 1.89230 1.22986 0.92704 0.93287 0.93248 0.92764 0.91848 0.90724 0.93162 0.93119 0.89777 0.99450 0.96477 0.92424 0.93479 0.90598 0.88740 0.90756 0.91001 0.90275 0.91759 0.91222 0.91960 0.91989 0.91957 0.91285 0.90212 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.15 0.37 -1.54 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.83 16 3 C -0.16 -2.68 4.58 -26.73 -0.12 -2.81 16 4 C 0.06 1.22 5.02 -3.83 -0.02 1.20 16 5 N -0.52 -11.06 4.66 -236.07 -1.10 -12.16 16 6 C 0.18 4.61 3.82 -4.97 -0.02 4.59 16 7 C -0.58 -16.42 8.49 -34.44 -0.29 -16.71 16 8 H 0.06 1.60 7.11 -52.48 -0.37 1.23 16 9 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 10 N -0.92 -27.82 13.65 55.43 0.76 -27.07 16 11 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.06 0.97 4.59 -3.82 -0.02 0.95 16 16 C 0.06 0.91 3.49 -25.72 -0.09 0.82 16 17 H 0.08 1.20 6.63 -51.92 -0.34 0.85 16 18 C 0.02 0.30 7.54 38.17 0.29 0.58 16 19 O -0.38 -5.18 9.62 -59.04 -0.57 -5.75 16 20 C 0.25 3.55 1.02 -26.78 -0.03 3.52 16 21 C -0.12 -1.50 5.33 -26.75 -0.14 -1.64 16 22 C -0.11 -1.15 5.79 -26.72 -0.15 -1.31 16 23 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 24 C -0.11 -1.15 5.79 -26.72 -0.15 -1.31 16 25 C -0.13 -1.67 5.28 -26.74 -0.14 -1.81 16 26 O -0.34 -5.96 10.71 -59.04 -0.63 -6.59 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.51 6.25 -51.93 -0.32 1.18 16 33 H 0.05 0.78 6.28 -51.93 -0.33 0.46 16 34 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 35 H 0.08 1.78 6.80 -51.93 -0.35 1.43 16 36 H -0.01 -0.31 5.91 -51.93 -0.31 -0.62 16 37 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 39 H 0.05 0.76 5.86 -51.93 -0.30 0.45 16 40 H 0.08 1.40 7.82 -51.93 -0.41 0.99 16 41 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 51 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 52 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -30.85 389.45 -11.40 -42.26 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.71 Total: 1.31 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.94 Total: -18.27 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.34 Total: -39.23 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.20 Total: -12.34 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.85 -11.40 -42.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208637948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.807 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds