Wall clock time and date at job start Fri Apr 10 2020 22:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47272 * 2 1 4 4 C 1.53001 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.46912 * 181.41754 * 4 3 2 6 6 C 1.46901 * 111.00331 * 62.12195 * 5 4 3 7 7 C 1.50706 * 109.47238 * 66.04181 * 6 5 4 8 8 H 1.08003 * 119.99728 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00134 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99875 * 179.72748 * 9 7 6 12 12 H 1.48503 * 109.46775 * 180.27678 * 11 9 7 13 13 H 1.48503 * 109.47056 * 300.27529 * 11 9 7 14 14 H 1.48497 * 109.47116 * 60.27352 * 11 9 7 15 15 C 1.46897 * 111.00400 * 298.16901 * 5 4 3 16 16 C 1.53004 * 109.47001 * 288.31462 * 15 5 4 17 17 H 1.09009 * 110.85966 * 54.40574 * 16 15 5 18 18 C 1.54920 * 110.98130 * 178.21617 * 16 15 5 19 19 O 1.44204 * 103.08115 * 153.64286 * 18 16 15 20 20 C 1.43313 * 107.26270 * 338.58427 * 19 18 16 21 21 C 1.52945 * 109.64732 * 239.62378 * 20 19 18 22 22 C 1.53018 * 109.45666 * 299.10799 * 21 20 19 23 23 C 1.52997 * 109.47229 * 300.22513 * 22 21 20 24 24 C 1.53000 * 109.49136 * 60.16349 * 23 22 21 25 25 C 1.52958 * 109.62717 * 118.97934 * 20 19 18 26 26 O 1.43703 * 108.85575 * 359.32103 * 20 19 18 27 27 H 1.09001 * 109.47605 * 300.00166 * 1 2 3 28 28 H 1.09009 * 109.47122 * 60.00007 * 1 2 3 29 29 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47175 * 239.99535 * 2 1 3 31 31 H 1.09001 * 109.47318 * 120.00207 * 2 1 3 32 32 H 1.08996 * 109.46815 * 59.99852 * 3 2 1 33 33 H 1.08996 * 109.46980 * 299.99882 * 3 2 1 34 34 H 1.08994 * 109.47072 * 61.41700 * 4 3 2 35 35 H 1.09001 * 109.47057 * 301.41394 * 4 3 2 36 36 H 1.09005 * 109.47143 * 306.04709 * 6 5 4 37 37 H 1.08999 * 109.47788 * 186.04685 * 6 5 4 38 38 H 0.97000 * 119.99829 * 359.72310 * 10 9 7 39 39 H 1.09001 * 109.46827 * 48.30815 * 15 5 4 40 40 H 1.08998 * 109.48014 * 168.31523 * 15 5 4 41 41 H 1.09008 * 110.69392 * 272.04157 * 18 16 15 42 42 H 1.08998 * 110.68744 * 35.24186 * 18 16 15 43 43 H 1.09003 * 109.47512 * 59.09696 * 21 20 19 44 44 H 1.08993 * 109.47726 * 179.11111 * 21 20 19 45 45 H 1.09005 * 109.47199 * 180.22841 * 22 21 20 46 46 H 1.09000 * 109.47376 * 60.22746 * 22 21 20 47 47 H 1.08998 * 109.46733 * 300.16736 * 23 22 21 48 48 H 1.08996 * 109.46660 * 180.16687 * 23 22 21 49 49 H 1.08999 * 109.47707 * 179.82996 * 24 23 22 50 50 H 1.09005 * 109.47182 * 59.82603 * 24 23 22 51 51 H 1.09000 * 109.47653 * 180.88828 * 25 20 19 52 52 H 1.08997 * 109.47682 * 300.90161 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8270 0.0336 6 6 3.6311 3.5067 1.2633 7 6 4.2963 2.8616 2.4519 8 1 4.9703 2.0301 2.3080 9 6 4.0443 3.3329 3.7229 10 7 3.2232 4.3452 3.8981 11 14 4.8629 2.5284 5.1967 12 1 4.4250 3.2117 6.4403 13 1 4.4765 1.0958 5.2566 14 1 6.3380 2.6380 5.0646 15 6 3.6243 3.5690 -1.1570 16 6 4.3977 3.0707 -2.3796 17 1 4.2997 1.9904 -2.4870 18 6 3.9334 3.8003 -3.6649 19 8 5.0934 3.7277 -4.5185 20 6 6.2301 3.5088 -3.6737 21 6 7.2283 4.6545 -3.8475 22 6 7.7012 4.7022 -5.3020 23 6 8.3720 3.3756 -5.6639 24 6 7.3684 2.2332 -5.4950 25 6 6.8950 2.1811 -4.0408 26 8 5.7902 3.4609 -2.3065 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9329 0.9509 -0.9032 35 1 3.9337 0.9067 0.8762 36 1 2.5488 3.4262 1.3647 37 1 3.9142 4.5582 1.2149 38 1 2.7979 4.7627 3.1328 39 1 2.5571 3.4115 -1.3133 40 1 3.8175 4.6321 -1.0136 41 1 3.0884 3.2818 -4.1183 42 1 3.6788 4.8378 -3.4482 43 1 6.7467 5.5981 -3.5910 44 1 8.0842 4.4934 -3.1922 45 1 8.4157 5.5161 -5.4253 46 1 6.8458 4.8674 -5.9570 47 1 9.2257 3.2091 -5.0070 48 1 8.7115 3.4108 -6.6991 49 1 7.8456 1.2886 -5.7558 50 1 6.5131 2.4011 -6.1497 51 1 7.7497 2.0096 -3.3865 52 1 6.1771 1.3698 -3.9212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208637948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:35 Heat of formation + Delta-G solvation = -135.105438 kcal Electronic energy + Delta-G solvation = -27839.259748 eV Core-core repulsion = 24222.773121 eV Total energy + Delta-G solvation = -3616.486627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92838 -39.47103 -37.84712 -35.97763 -35.54870 -34.73850 -32.30816 -31.83449 -29.82965 -29.68539 -28.03095 -25.90636 -25.27774 -23.89944 -23.11873 -23.03588 -22.49543 -21.04809 -20.50213 -18.75153 -18.36059 -17.68364 -16.91512 -16.65370 -16.22186 -16.10619 -15.94304 -15.64352 -15.38918 -15.12298 -14.75363 -14.62835 -14.42482 -14.22044 -14.01430 -13.65898 -13.60096 -13.51072 -13.31832 -13.20616 -13.09630 -12.95360 -12.53763 -12.49077 -12.32677 -12.25995 -12.16365 -11.96983 -11.91597 -11.82893 -11.67172 -11.50605 -11.36141 -11.35640 -11.07732 -10.74777 -10.55667 -10.33826 -8.97650 -8.65561 -6.35433 1.51449 1.59933 1.79272 2.37613 2.54859 2.91389 3.03019 3.16410 3.62862 3.69041 3.71978 3.77193 3.94117 3.94933 3.99789 4.03158 4.20947 4.24365 4.27248 4.32642 4.38741 4.42309 4.45675 4.48819 4.52141 4.57933 4.66756 4.70387 4.74796 4.77940 4.86235 4.89501 4.97158 5.00424 5.01245 5.04240 5.05438 5.13975 5.20298 5.20826 5.26172 5.28736 5.31882 5.37753 5.44155 5.51297 5.80133 6.00958 6.17948 6.41629 6.43457 6.66308 7.43366 8.72732 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003747 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.835131 B = 7470.280243 C = 8720.398407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.068 3.932 5 N -0.535 5.535 6 C 0.196 3.804 7 C -0.592 4.592 8 H 0.049 0.951 9 C -0.036 4.036 10 N -0.939 5.939 11 Si 1.116 2.884 12 H -0.283 1.283 13 H -0.268 1.268 14 H -0.274 1.274 15 C 0.058 3.942 16 C 0.063 3.937 17 H 0.087 0.913 18 C 0.028 3.972 19 O -0.379 6.379 20 C 0.248 3.752 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.134 4.134 26 O -0.380 6.380 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.055 0.945 36 H -0.024 1.024 37 H -0.013 1.013 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -5.800 -20.971 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.187 4.187 4 C -0.060 4.060 5 N -0.257 5.257 6 C 0.070 3.930 7 C -0.630 4.630 8 H 0.067 0.933 9 C -0.233 4.233 10 N -0.577 5.577 11 Si 0.938 3.062 12 H -0.208 1.208 13 H -0.194 1.194 14 H -0.199 1.199 15 C -0.070 4.070 16 C 0.005 3.995 17 H 0.104 0.896 18 C -0.049 4.049 19 O -0.301 6.301 20 C 0.171 3.829 21 C -0.160 4.160 22 C -0.145 4.145 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.172 4.172 26 O -0.301 6.301 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.074 0.926 36 H -0.007 1.007 37 H 0.005 0.995 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.723 -5.674 -19.369 20.524 hybrid contribution -1.283 0.455 -1.009 1.694 sum 2.440 -5.219 -20.378 21.177 Atomic orbital electron populations 1.21746 0.95083 1.02230 1.01439 1.21400 0.96505 0.95125 1.02159 1.22128 0.97304 0.98486 1.00737 1.22069 0.92811 0.89769 1.01346 1.62062 1.59660 1.02697 1.01318 1.19523 0.92570 0.92599 0.88349 1.22232 1.29136 1.18685 0.92946 0.93260 1.27287 0.96228 0.95815 1.03951 1.70928 1.29625 1.23272 1.33848 0.82940 0.75599 0.75477 0.72201 1.20830 1.19364 1.19902 1.22097 0.97076 0.97986 0.89845 1.23917 0.81128 0.99586 0.94837 0.89560 1.24275 0.89907 1.01594 0.89096 1.88810 1.15738 1.93865 1.31643 1.23506 0.87518 0.95965 0.75899 1.21830 0.98015 0.96796 0.99350 1.21430 1.00667 0.98630 0.93735 1.21584 0.97912 0.93808 1.02420 1.21431 0.99383 0.99556 0.94211 1.22098 1.00665 0.95390 0.99027 1.89423 1.25804 1.89523 1.25354 0.94302 0.92042 0.91216 0.90358 0.93036 0.94723 0.91375 0.90395 0.92647 1.00688 0.99462 0.93805 0.91650 0.92349 0.85665 0.90595 0.92201 0.90771 0.90279 0.91634 0.91702 0.90006 0.90322 0.91615 0.90772 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.11 -3.07 5.93 30.59 0.18 -2.89 16 3 C -0.15 -4.96 4.58 30.60 0.14 -4.82 16 4 C 0.07 2.57 5.02 86.30 0.43 3.00 16 5 N -0.54 -23.37 4.66 -900.79 -4.20 -27.57 16 6 C 0.20 10.47 3.82 85.56 0.33 10.80 16 7 C -0.59 -34.49 8.49 25.60 0.22 -34.27 16 8 H 0.05 2.88 7.11 -2.91 -0.02 2.86 16 9 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 10 N -0.94 -58.83 13.65 21.45 0.29 -58.54 16 11 Si 1.12 51.62 29.90 68.60 2.05 53.67 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.06 2.06 4.59 86.31 0.40 2.45 16 16 C 0.06 1.87 3.49 31.25 0.11 1.98 16 17 H 0.09 2.43 6.63 -2.38 -0.02 2.42 16 18 C 0.03 0.66 7.54 72.64 0.55 1.21 16 19 O -0.38 -9.79 9.62 -126.22 -1.21 -11.00 16 20 C 0.25 6.74 1.02 30.56 0.03 6.77 16 21 C -0.12 -3.02 5.33 30.58 0.16 -2.85 16 22 C -0.11 -2.00 5.79 30.60 0.18 -1.82 16 23 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 24 C -0.11 -1.95 5.79 30.60 0.18 -1.77 16 25 C -0.13 -3.14 5.28 30.59 0.16 -2.98 16 26 O -0.38 -13.17 10.71 -126.22 -1.35 -14.52 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.44 6.25 -2.39 -0.01 1.42 16 33 H 0.07 2.02 6.28 -2.39 -0.02 2.00 16 34 H 0.08 2.52 6.57 -2.39 -0.02 2.50 16 35 H 0.05 2.40 6.80 -2.39 -0.02 2.38 16 36 H -0.02 -1.34 5.91 -2.38 -0.01 -1.36 16 37 H -0.01 -0.74 7.73 -2.39 -0.02 -0.76 16 38 H 0.25 16.04 7.22 -92.71 -0.67 15.37 16 39 H 0.07 2.05 5.86 -2.39 -0.01 2.04 16 40 H 0.06 2.24 7.82 -2.39 -0.02 2.22 16 41 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.08 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.06 1.29 7.72 -2.39 -0.02 1.27 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.07 1.24 7.72 -2.38 -0.02 1.23 16 51 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.09 389.45 0.96 -68.13 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.96 Total: 21.16 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.42 Total: -31.33 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.90 Total: -86.11 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -2.57 Total: -25.52 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -69.09 0.96 -68.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208637948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.973 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds