Wall clock time and date at job start Fri Apr 10 2020 22:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00101 * 2 1 4 4 O 1.20835 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00504 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47213 * 299.99969 * 5 3 2 7 7 C 1.53003 * 109.46812 * 59.99819 * 5 3 2 8 8 C 1.52999 * 109.47337 * 179.97438 * 5 3 2 9 9 N 1.46903 * 109.47074 * 178.98833 * 8 5 3 10 10 C 1.46897 * 111.00083 * 286.47515 * 9 8 5 11 11 C 1.50698 * 109.47217 * 80.52235 * 10 9 8 12 12 H 1.08001 * 119.99963 * 356.96882 * 11 10 9 13 13 C 1.37878 * 120.00053 * 176.96483 * 11 10 9 14 14 N 1.31518 * 119.99752 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00120 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47211 * 90.00179 * 15 13 11 17 17 H 1.48504 * 109.46625 * 210.00090 * 15 13 11 18 18 H 1.48492 * 109.46814 * 329.99660 * 15 13 11 19 19 C 1.46907 * 111.00084 * 162.51983 * 9 8 5 20 20 C 1.52990 * 109.46412 * 69.98563 * 19 9 8 21 21 C 1.52991 * 109.46956 * 164.02134 * 20 19 9 22 22 C 1.53012 * 109.46419 * 75.94582 * 21 20 19 23 23 C 1.52993 * 109.46179 * 284.05264 * 22 21 20 24 24 C 1.52987 * 109.49583 * 315.99144 * 23 22 21 25 25 C 1.53012 * 109.47633 * 112.93991 * 24 23 22 26 26 C 1.52977 * 109.46624 * 190.01255 * 19 9 8 27 27 H 1.09002 * 109.47382 * 300.00070 * 1 2 3 28 28 H 1.09004 * 109.46955 * 60.00612 * 1 2 3 29 29 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47109 * 60.00086 * 7 5 3 31 31 H 1.09004 * 109.47075 * 180.02562 * 7 5 3 32 32 H 1.09000 * 109.47337 * 300.00272 * 7 5 3 33 33 H 1.09000 * 109.47126 * 58.99064 * 8 5 3 34 34 H 1.09004 * 109.47061 * 298.98437 * 8 5 3 35 35 H 1.08997 * 109.47457 * 200.52647 * 10 9 8 36 36 H 1.09004 * 109.47198 * 320.52176 * 10 9 8 37 37 H 0.96999 * 120.00000 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46485 * 310.00128 * 19 9 8 39 39 H 1.08995 * 109.47331 * 284.01817 * 20 19 9 40 40 H 1.08996 * 109.47139 * 44.02291 * 20 19 9 41 41 H 1.09001 * 109.47183 * 315.95244 * 21 20 19 42 42 H 1.08999 * 109.47713 * 195.94469 * 21 20 19 43 43 H 1.09001 * 109.47491 * 164.05894 * 22 21 20 44 44 H 1.09002 * 109.47641 * 44.05330 * 22 21 20 45 45 H 1.08995 * 109.46642 * 195.98250 * 23 22 21 46 46 H 1.08998 * 109.45816 * 75.99643 * 23 22 21 47 47 H 1.09001 * 109.47362 * 352.94025 * 24 23 22 48 48 H 1.08999 * 109.47052 * 232.93431 * 24 23 22 49 49 H 1.08995 * 109.47901 * 164.05573 * 25 24 23 50 50 H 1.09000 * 109.47959 * 44.02443 * 25 24 23 51 51 H 1.08997 * 109.47006 * 247.06586 * 26 19 9 52 52 H 1.09001 * 109.47373 * 7.06396 * 26 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5811 -1.2483 8 6 4.0000 2.7422 -0.0002 9 7 5.4668 2.8192 0.0248 10 6 5.9900 2.4658 1.3512 11 6 6.0278 0.9660 1.4931 12 1 5.6509 0.3388 0.6988 13 6 6.5437 0.3945 2.6369 14 7 7.0023 1.1584 3.6043 15 14 6.5914 -1.4646 2.8124 16 1 7.8757 -1.9799 2.2741 17 1 6.4741 -1.8294 4.2472 18 1 5.4620 -2.0623 2.0558 19 6 5.9312 4.1508 -0.3867 20 6 5.5805 5.1708 0.6983 21 6 6.3903 6.4498 0.4767 22 6 5.7875 7.2397 -0.6869 23 6 6.1738 6.5741 -2.0092 24 6 7.6544 6.1905 -1.9743 25 6 7.7866 4.6661 -1.9786 26 6 7.4472 4.1218 -0.5895 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.7244 1.0750 -2.1385 31 1 5.2023 0.6378 -1.2477 32 1 3.8047 -0.4642 -1.2482 33 1 3.5949 3.2413 0.8801 34 1 3.6258 3.2312 -0.8996 35 1 6.9972 2.8669 1.4632 36 1 5.3434 2.8874 2.1210 37 1 7.3649 0.7564 4.4092 38 1 5.4451 4.4324 -1.3207 39 1 4.5164 5.4016 0.6498 40 1 5.8180 4.7556 1.6777 41 1 7.4229 6.1902 0.2432 42 1 6.3640 7.0578 1.3809 43 1 6.1687 8.2607 -0.6691 44 1 4.7017 7.2555 -0.5916 45 1 5.9977 7.2687 -2.8305 46 1 5.5698 5.6786 -2.1550 47 1 8.1127 6.5923 -1.0706 48 1 8.1568 6.6011 -2.8501 49 1 8.8091 4.3907 -2.2369 50 1 7.0999 4.2437 -2.7121 51 1 7.9272 4.7391 0.1698 52 1 7.8058 3.0960 -0.5037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208719119.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:39 Heat of formation + Delta-G solvation = -88.835577 kcal Electronic energy + Delta-G solvation = -28569.164907 eV Core-core repulsion = 24954.684692 eV Total energy + Delta-G solvation = -3614.480215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.22370 -39.48432 -36.80336 -35.92392 -33.23564 -32.63850 -32.58591 -30.33531 -27.61754 -27.40160 -26.10302 -25.48436 -24.40275 -23.12132 -21.76080 -21.56731 -19.68225 -19.26814 -18.46721 -17.43888 -16.70453 -16.07385 -15.75702 -15.58954 -14.96570 -14.67423 -14.21610 -13.97695 -13.87001 -13.72825 -13.43555 -13.17626 -12.94395 -12.63840 -12.51867 -12.27264 -12.09373 -11.90477 -11.60833 -11.49138 -11.24977 -11.16714 -11.02567 -10.81326 -10.76425 -10.59436 -10.57173 -10.53148 -10.43128 -10.27198 -10.21589 -10.04663 -9.91838 -9.72057 -9.56872 -9.25263 -9.08040 -8.39275 -7.19723 -6.03007 -4.03523 2.64945 3.08683 3.31555 3.38626 3.41379 4.41306 4.85330 4.89699 5.06488 5.09895 5.22710 5.24380 5.28393 5.32827 5.41627 5.42685 5.48673 5.54326 5.56866 5.59622 5.61722 5.71458 5.78476 5.99076 6.01384 6.10158 6.14442 6.17315 6.18045 6.25617 6.29611 6.35281 6.40939 6.42527 6.47327 6.54527 6.54759 6.66397 6.69630 6.77452 6.85751 6.88760 6.94943 6.97318 7.32340 7.38171 7.84329 8.11825 8.16671 8.25191 8.56381 9.03760 9.59806 11.06689 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.005572 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.339811 B = 5024.010754 C = 6912.479125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.523 6.523 5 C -0.091 4.091 6 H 0.149 0.851 7 C -0.126 4.126 8 C 0.089 3.911 9 N -0.529 5.529 10 C 0.188 3.812 11 C -0.512 4.512 12 H 0.075 0.925 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.270 1.270 19 C 0.086 3.914 20 C -0.154 4.154 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.036 0.964 36 H -0.007 1.007 37 H 0.260 0.740 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 5.453 -9.791 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.411 6.411 5 C -0.110 4.110 6 H 0.166 0.834 7 C -0.184 4.184 8 C -0.039 4.039 9 N -0.252 5.252 10 C 0.063 3.937 11 C -0.550 4.550 12 H 0.093 0.907 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.022 4.022 20 C -0.193 4.193 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.164 4.164 25 C -0.153 4.153 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.010 0.990 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.251 5.380 -9.951 12.085 hybrid contribution -0.639 -0.287 0.994 1.215 sum -4.890 5.094 -8.958 11.406 Atomic orbital electron populations 1.23168 0.77620 1.03096 1.02091 1.86568 1.22438 1.34208 1.84242 1.24501 0.92832 0.80710 0.70849 1.90593 1.67659 1.36473 1.46401 1.21520 0.84023 1.00344 1.05139 0.83394 1.21613 1.03993 0.98643 0.94124 1.21618 0.89584 0.92817 0.99923 1.62382 1.06599 1.24004 1.32192 1.19835 0.95265 0.96234 0.82393 1.21433 1.39874 0.91670 1.02071 0.90674 1.24999 0.95525 0.97910 0.96019 1.69957 1.41415 1.34900 1.07132 0.86648 0.78655 0.85941 0.77186 1.20663 1.21482 1.19514 1.21978 0.95540 0.87763 0.96929 1.22397 0.99258 0.96174 1.01500 1.22026 1.01456 0.96409 0.97295 1.21607 1.00288 0.98346 0.95112 1.21856 0.96852 1.00835 0.96938 1.21836 0.96378 0.96705 1.01466 1.21683 1.00916 0.94651 0.98012 1.21842 0.95424 1.02430 0.95749 0.92248 0.92365 0.88586 0.93969 0.88815 0.92954 0.94909 0.92487 0.94635 0.98962 0.93010 0.90632 0.92907 0.90819 0.89532 0.93081 0.92901 0.92476 0.93013 0.90780 0.91095 0.93062 0.92639 0.91963 0.91676 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.92 10.47 -39.25 -0.41 -6.33 16 3 C 0.47 8.60 7.26 36.00 0.26 8.86 16 4 O -0.52 -10.43 15.73 -18.76 -0.30 -10.72 16 5 C -0.09 -1.72 2.31 -91.77 -0.21 -1.93 16 6 H 0.15 3.19 5.14 -51.93 -0.27 2.93 16 7 C -0.13 -2.12 8.34 37.16 0.31 -1.81 16 8 C 0.09 1.71 3.17 -3.82 -0.01 1.70 16 9 N -0.53 -10.33 3.53 -228.10 -0.81 -11.14 16 10 C 0.19 4.45 3.06 -4.98 -0.02 4.43 16 11 C -0.51 -13.03 7.25 -34.44 -0.25 -13.28 16 12 H 0.08 1.83 4.60 -52.49 -0.24 1.59 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 15 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.09 1.44 1.73 -67.73 -0.12 1.33 16 20 C -0.15 -2.56 4.46 -26.74 -0.12 -2.68 16 21 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 22 C -0.12 -1.40 5.71 -26.73 -0.15 -1.56 16 23 C -0.13 -1.49 5.48 -26.74 -0.15 -1.64 16 24 C -0.13 -1.46 5.47 -26.73 -0.15 -1.61 16 25 C -0.11 -1.49 5.59 -26.72 -0.15 -1.64 16 26 C -0.12 -1.86 4.13 -26.74 -0.11 -1.97 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.69 6.74 -51.93 -0.35 1.34 16 32 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.03 0.69 7.40 -51.93 -0.38 0.30 16 34 H 0.06 1.03 7.76 -51.93 -0.40 0.63 16 35 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 36 H -0.01 -0.19 6.92 -51.93 -0.36 -0.55 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.08 1.20 4.40 -51.93 -0.23 0.97 16 39 H 0.05 0.88 7.58 -51.93 -0.39 0.49 16 40 H 0.07 1.43 6.05 -51.93 -0.31 1.12 16 41 H 0.09 1.19 2.83 -51.93 -0.15 1.04 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.95 4.69 -51.93 -0.24 0.70 16 47 H 0.07 0.83 5.47 -51.93 -0.28 0.55 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.81 7.47 -51.93 -0.39 0.43 16 51 H 0.06 1.04 5.47 -51.93 -0.28 0.76 16 52 H 0.08 1.50 7.31 -51.93 -0.38 1.12 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -28.13 373.05 -8.98 -37.11 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.77 Total: 5.34 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.03 Total: -10.87 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.07 Total: -35.80 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.71 Total: -17.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.13 -8.98 -37.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208719119.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.727 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds