Wall clock time and date at job start Fri Apr 10 2020 22:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00101 * 2 1 4 4 O 1.20835 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00504 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47213 * 299.99969 * 5 3 2 7 7 C 1.53003 * 109.46812 * 59.99819 * 5 3 2 8 8 C 1.52999 * 109.47337 * 179.97438 * 5 3 2 9 9 N 1.46903 * 109.47074 * 178.98833 * 8 5 3 10 10 C 1.46897 * 111.00083 * 286.47515 * 9 8 5 11 11 C 1.50698 * 109.47217 * 80.52235 * 10 9 8 12 12 H 1.08001 * 119.99963 * 356.96882 * 11 10 9 13 13 C 1.37878 * 120.00053 * 176.96483 * 11 10 9 14 14 N 1.31518 * 119.99752 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00120 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47211 * 90.00179 * 15 13 11 17 17 H 1.48504 * 109.46625 * 210.00090 * 15 13 11 18 18 H 1.48492 * 109.46814 * 329.99660 * 15 13 11 19 19 C 1.46907 * 111.00084 * 162.51983 * 9 8 5 20 20 C 1.52990 * 109.46412 * 69.98563 * 19 9 8 21 21 C 1.52991 * 109.46956 * 164.02134 * 20 19 9 22 22 C 1.53012 * 109.46419 * 75.94582 * 21 20 19 23 23 C 1.52993 * 109.46179 * 284.05264 * 22 21 20 24 24 C 1.52987 * 109.49583 * 315.99144 * 23 22 21 25 25 C 1.53012 * 109.47633 * 112.93991 * 24 23 22 26 26 C 1.52977 * 109.46624 * 190.01255 * 19 9 8 27 27 H 1.09002 * 109.47382 * 300.00070 * 1 2 3 28 28 H 1.09004 * 109.46955 * 60.00612 * 1 2 3 29 29 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47109 * 60.00086 * 7 5 3 31 31 H 1.09004 * 109.47075 * 180.02562 * 7 5 3 32 32 H 1.09000 * 109.47337 * 300.00272 * 7 5 3 33 33 H 1.09000 * 109.47126 * 58.99064 * 8 5 3 34 34 H 1.09004 * 109.47061 * 298.98437 * 8 5 3 35 35 H 1.08997 * 109.47457 * 200.52647 * 10 9 8 36 36 H 1.09004 * 109.47198 * 320.52176 * 10 9 8 37 37 H 0.96999 * 120.00000 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46485 * 310.00128 * 19 9 8 39 39 H 1.08995 * 109.47331 * 284.01817 * 20 19 9 40 40 H 1.08996 * 109.47139 * 44.02291 * 20 19 9 41 41 H 1.09001 * 109.47183 * 315.95244 * 21 20 19 42 42 H 1.08999 * 109.47713 * 195.94469 * 21 20 19 43 43 H 1.09001 * 109.47491 * 164.05894 * 22 21 20 44 44 H 1.09002 * 109.47641 * 44.05330 * 22 21 20 45 45 H 1.08995 * 109.46642 * 195.98250 * 23 22 21 46 46 H 1.08998 * 109.45816 * 75.99643 * 23 22 21 47 47 H 1.09001 * 109.47362 * 352.94025 * 24 23 22 48 48 H 1.08999 * 109.47052 * 232.93431 * 24 23 22 49 49 H 1.08995 * 109.47901 * 164.05573 * 25 24 23 50 50 H 1.09000 * 109.47959 * 44.02443 * 25 24 23 51 51 H 1.08997 * 109.47006 * 247.06586 * 26 19 9 52 52 H 1.09001 * 109.47373 * 7.06396 * 26 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5811 -1.2483 8 6 4.0000 2.7422 -0.0002 9 7 5.4668 2.8192 0.0248 10 6 5.9900 2.4658 1.3512 11 6 6.0278 0.9660 1.4931 12 1 5.6509 0.3388 0.6988 13 6 6.5437 0.3945 2.6369 14 7 7.0023 1.1584 3.6043 15 14 6.5914 -1.4646 2.8124 16 1 7.8757 -1.9799 2.2741 17 1 6.4741 -1.8294 4.2472 18 1 5.4620 -2.0623 2.0558 19 6 5.9312 4.1508 -0.3867 20 6 5.5805 5.1708 0.6983 21 6 6.3903 6.4498 0.4767 22 6 5.7875 7.2397 -0.6869 23 6 6.1738 6.5741 -2.0092 24 6 7.6544 6.1905 -1.9743 25 6 7.7866 4.6661 -1.9786 26 6 7.4472 4.1218 -0.5895 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.7244 1.0750 -2.1385 31 1 5.2023 0.6378 -1.2477 32 1 3.8047 -0.4642 -1.2482 33 1 3.5949 3.2413 0.8801 34 1 3.6258 3.2312 -0.8996 35 1 6.9972 2.8669 1.4632 36 1 5.3434 2.8874 2.1210 37 1 7.3649 0.7564 4.4092 38 1 5.4451 4.4324 -1.3207 39 1 4.5164 5.4016 0.6498 40 1 5.8180 4.7556 1.6777 41 1 7.4229 6.1902 0.2432 42 1 6.3640 7.0578 1.3809 43 1 6.1687 8.2607 -0.6691 44 1 4.7017 7.2555 -0.5916 45 1 5.9977 7.2687 -2.8305 46 1 5.5698 5.6786 -2.1550 47 1 8.1127 6.5923 -1.0706 48 1 8.1568 6.6011 -2.8501 49 1 8.8091 4.3907 -2.2369 50 1 7.0999 4.2437 -2.7121 51 1 7.9272 4.7391 0.1698 52 1 7.8058 3.0960 -0.5037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208719119.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:38 Heat of formation + Delta-G solvation = -103.008484 kcal Electronic energy + Delta-G solvation = -28569.779490 eV Core-core repulsion = 24954.684692 eV Total energy + Delta-G solvation = -3615.094798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65265 -40.79456 -38.19483 -37.34648 -34.67306 -34.58488 -33.73729 -31.72152 -29.37589 -28.63205 -27.39800 -26.68124 -25.88281 -24.81015 -23.27408 -22.71637 -20.99194 -20.52046 -19.94041 -19.07111 -18.23528 -17.53061 -17.22102 -16.88737 -16.54194 -16.19248 -15.71977 -15.42304 -15.13738 -14.93678 -14.68565 -14.49223 -14.28659 -14.04168 -13.95602 -13.73484 -13.53993 -13.29326 -12.99558 -12.87732 -12.78720 -12.64577 -12.50002 -12.38697 -12.19654 -12.08876 -11.91519 -11.79239 -11.70225 -11.66853 -11.48924 -11.42311 -11.25920 -11.22559 -11.06877 -10.78482 -10.53426 -10.46213 -8.90060 -8.09535 -6.16065 1.18535 1.45907 1.46724 1.56631 1.78597 2.46365 3.21472 3.37944 3.71972 3.83471 3.96054 4.01644 4.10702 4.22662 4.29267 4.30583 4.31095 4.32335 4.35179 4.40620 4.45428 4.48548 4.59644 4.68370 4.75920 4.79215 4.90436 4.94498 4.99715 5.05849 5.07321 5.10800 5.15343 5.19410 5.25272 5.28475 5.31111 5.34137 5.38845 5.41156 5.50248 5.51791 5.54163 5.56831 5.69132 5.75095 5.83378 6.21300 6.46284 6.71619 6.77046 7.00088 7.51495 9.00337 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.005572 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.339811 B = 5024.010754 C = 6912.479125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.542 6.542 5 C -0.092 4.092 6 H 0.120 0.880 7 C -0.117 4.117 8 C 0.096 3.904 9 N -0.524 5.524 10 C 0.211 3.789 11 C -0.513 4.513 12 H 0.087 0.913 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.950 3.050 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.256 1.256 19 C 0.085 3.915 20 C -0.147 4.147 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.012 0.988 36 H -0.045 1.045 37 H 0.259 0.741 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 5.258 -12.355 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.433 6.433 5 C -0.111 4.111 6 H 0.137 0.863 7 C -0.175 4.175 8 C -0.032 4.032 9 N -0.247 5.247 10 C 0.085 3.915 11 C -0.551 4.551 12 H 0.105 0.895 13 C -0.195 4.195 14 N -0.577 5.577 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.180 1.180 19 C -0.022 4.022 20 C -0.186 4.186 21 C -0.168 4.168 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.030 0.970 36 H -0.027 1.027 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.871 5.174 -12.541 14.414 hybrid contribution -0.537 -0.207 1.795 1.885 sum -5.408 4.967 -10.746 13.015 Atomic orbital electron populations 1.23557 0.75038 1.05676 1.02433 1.86533 1.24930 1.32825 1.83637 1.24235 0.92502 0.81074 0.70480 1.90582 1.67998 1.37219 1.47453 1.21372 0.85022 0.99709 1.04973 0.86301 1.21534 1.02944 0.99369 0.93611 1.21554 0.88939 0.93395 0.99356 1.62366 1.06965 1.26105 1.29230 1.19403 0.93222 0.95370 0.83486 1.21834 1.38553 0.92595 1.02086 0.89481 1.25824 0.95503 1.02316 0.95880 1.70104 1.43018 1.36789 1.07778 0.85655 0.79133 0.80738 0.76899 1.20104 1.21893 1.18018 1.22148 0.96359 0.86276 0.97465 1.22285 0.99438 0.97607 0.99287 1.22000 1.01171 0.95070 0.98535 1.21574 0.99995 0.98996 0.94355 1.21841 0.96588 1.00707 0.97165 1.21799 0.96541 0.95248 1.02390 1.21629 1.01508 0.95864 0.95545 1.21776 0.94456 1.00695 0.97970 0.92502 0.91503 0.84941 0.92083 0.90173 0.91691 0.97527 0.90871 0.97019 1.02714 0.93247 0.88708 0.93423 0.94775 0.89249 0.93022 0.90976 0.92798 0.90985 0.91987 0.91292 0.90925 0.91701 0.91613 0.92241 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.42 10.47 -51.41 -0.54 -11.96 16 3 C 0.47 17.10 7.26 71.23 0.52 17.62 16 4 O -0.54 -21.41 15.73 21.94 0.35 -21.06 16 5 C -0.09 -3.46 2.31 -11.54 -0.03 -3.48 16 6 H 0.12 5.25 5.14 -2.39 -0.01 5.24 16 7 C -0.12 -3.77 8.34 71.98 0.60 -3.17 16 8 C 0.10 3.77 3.17 86.30 0.27 4.04 16 9 N -0.52 -21.19 3.53 -875.57 -3.09 -24.28 16 10 C 0.21 10.63 3.06 85.56 0.26 10.89 16 11 C -0.51 -26.93 7.25 25.60 0.19 -26.74 16 12 H 0.09 4.29 4.60 -2.91 -0.01 4.28 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.94 -55.40 13.29 21.45 0.28 -55.12 16 15 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 C 0.09 2.90 1.73 44.90 0.08 2.98 16 20 C -0.15 -5.10 4.46 30.59 0.14 -4.96 16 21 C -0.13 -3.58 5.33 30.60 0.16 -3.42 16 22 C -0.11 -2.48 5.71 30.60 0.17 -2.30 16 23 C -0.13 -2.58 5.48 30.59 0.17 -2.42 16 24 C -0.12 -2.49 5.47 30.59 0.17 -2.33 16 25 C -0.11 -2.61 5.59 30.60 0.17 -2.44 16 26 C -0.11 -3.59 4.13 30.59 0.13 -3.47 16 27 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.07 1.40 8.13 -2.38 -0.02 1.38 16 29 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.80 6.74 -2.39 -0.02 2.79 16 32 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 33 H 0.01 0.29 7.40 -2.39 -0.02 0.27 16 34 H 0.07 2.62 7.76 -2.39 -0.02 2.60 16 35 H 0.01 0.64 6.56 -2.39 -0.02 0.63 16 36 H -0.04 -2.56 6.92 -2.38 -0.02 -2.58 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.10 2.92 4.40 -2.39 -0.01 2.91 16 39 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 40 H 0.03 1.44 6.05 -2.39 -0.01 1.42 16 41 H 0.09 2.42 2.83 -2.39 -0.01 2.42 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.24 7.82 -2.39 -0.02 1.23 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.43 4.69 -2.39 -0.01 1.42 16 47 H 0.07 1.46 5.47 -2.39 -0.01 1.45 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.57 7.47 -2.39 -0.02 1.55 16 51 H 0.06 1.97 5.47 -2.39 -0.01 1.95 16 52 H 0.05 1.93 7.31 -2.39 -0.02 1.91 16 Total: -1.00 -63.31 373.05 4.58 -58.73 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.90 Total: 25.52 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.65 Total: -16.82 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.81 Total: -79.40 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.19 Total: -33.02 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.31 4.58 -58.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208719119.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.279 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds