Wall clock time and date at job start Fri Apr 10 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00611 * 2 1 4 4 O 1.20830 * 119.99665 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00443 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46886 * 60.00126 * 5 3 2 7 7 C 1.53000 * 109.46964 * 300.00078 * 5 3 2 8 8 C 1.52995 * 109.47203 * 179.97438 * 5 3 2 9 9 N 1.46898 * 109.47109 * 185.00013 * 8 5 3 10 10 C 1.46899 * 111.00225 * 66.04578 * 9 8 5 11 11 C 1.50696 * 109.47364 * 197.56955 * 10 9 8 12 12 H 1.07998 * 119.99916 * 3.52158 * 11 10 9 13 13 C 1.37878 * 120.00009 * 183.51657 * 11 10 9 14 14 N 1.31512 * 119.99909 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00073 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47134 * 89.99496 * 15 13 11 17 17 H 1.48500 * 109.47126 * 209.99786 * 15 13 11 18 18 H 1.48502 * 109.47096 * 329.99852 * 15 13 11 19 19 C 1.46907 * 111.00163 * 190.00349 * 9 8 5 20 20 C 1.53012 * 109.46539 * 289.36646 * 19 9 8 21 21 C 1.52993 * 109.45740 * 164.04818 * 20 19 9 22 22 C 1.52979 * 109.51021 * 315.98311 * 21 20 19 23 23 C 1.53013 * 109.46756 * 112.93753 * 22 21 20 24 24 C 1.53008 * 109.42984 * 284.04519 * 23 22 21 25 25 C 1.52980 * 109.48609 * 75.96177 * 24 23 22 26 26 C 1.52992 * 109.50598 * 247.06194 * 25 24 23 27 27 H 1.09001 * 109.46993 * 300.00580 * 1 2 3 28 28 H 1.09007 * 109.46860 * 59.99559 * 1 2 3 29 29 H 1.08995 * 109.47691 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47043 * 179.97438 * 7 5 3 31 31 H 1.09003 * 109.46985 * 300.00134 * 7 5 3 32 32 H 1.08996 * 109.47037 * 59.99441 * 7 5 3 33 33 H 1.08995 * 109.47292 * 304.99914 * 8 5 3 34 34 H 1.09001 * 109.46941 * 64.99923 * 8 5 3 35 35 H 1.08997 * 109.46862 * 317.57087 * 10 9 8 36 36 H 1.08998 * 109.47162 * 77.56891 * 10 9 8 37 37 H 0.96997 * 120.00415 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47088 * 49.36280 * 19 9 8 39 39 H 1.08998 * 109.47462 * 284.03999 * 20 19 9 40 40 H 1.08999 * 109.47648 * 44.05130 * 20 19 9 41 41 H 1.09004 * 109.46344 * 195.97424 * 21 20 19 42 42 H 1.08998 * 109.46052 * 75.99803 * 21 20 19 43 43 H 1.09006 * 109.47453 * 352.94119 * 22 21 20 44 44 H 1.08997 * 109.47417 * 232.93782 * 22 21 20 45 45 H 1.08996 * 109.47536 * 164.05795 * 23 22 21 46 46 H 1.08995 * 109.48396 * 44.03614 * 23 22 21 47 47 H 1.09003 * 109.46874 * 315.95696 * 24 23 22 48 48 H 1.09005 * 109.46386 * 195.96567 * 24 23 22 49 49 H 1.09000 * 109.46792 * 127.04934 * 25 24 23 50 50 H 1.09000 * 109.46745 * 7.07427 * 25 24 23 51 51 H 1.08996 * 109.47617 * 284.01676 * 26 25 24 52 52 H 1.09009 * 109.47573 * 164.00684 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7808 -0.8909 7 6 4.1139 0.5808 1.2483 8 6 4.0003 2.7418 -0.0011 9 7 5.4622 2.8201 -0.1224 10 6 5.9093 2.3230 -1.4304 11 6 7.3824 2.0108 -1.3723 12 1 7.9195 2.1118 -0.4408 13 6 8.0445 1.5960 -2.5084 14 7 9.3300 1.3230 -2.4576 15 14 7.1157 1.4218 -4.1197 16 1 7.1647 2.7077 -4.8608 17 1 7.7424 0.3537 -4.9393 18 1 5.7015 1.0655 -3.8398 19 6 5.9372 4.1906 0.1104 20 6 5.5268 5.0792 -1.0658 21 6 5.6570 6.5495 -0.6634 22 6 5.0793 6.7485 0.7390 23 6 6.2063 7.1123 1.7079 24 6 7.0139 5.8568 2.0437 25 6 7.9234 5.5047 0.8650 26 6 7.4618 4.1870 0.2394 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 5.2024 0.6374 1.2477 31 1 3.7245 1.0748 2.1385 32 1 3.8047 -0.4644 1.2482 33 1 3.5378 3.2572 -0.8428 34 1 3.6872 3.2136 0.9303 35 1 5.3560 1.4188 -1.6839 36 1 5.7289 3.0842 -2.1894 37 1 9.7959 1.0316 -3.2568 38 1 5.4957 4.5771 1.0290 39 1 6.1758 4.8768 -1.9178 40 1 4.4929 4.8672 -1.3380 41 1 5.1098 7.1701 -1.3731 42 1 6.7089 6.8352 -0.6669 43 1 4.6000 5.8267 1.0688 44 1 4.3441 7.5530 0.7184 45 1 5.7804 7.5257 2.6221 46 1 6.8596 7.8515 1.2446 47 1 6.3331 5.0279 2.2375 48 1 7.6220 6.0421 2.9292 49 1 8.9497 5.3998 1.2168 50 1 7.8746 6.2978 0.1189 51 1 7.7708 3.3559 0.8732 52 1 7.9098 4.0771 -0.7483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208719121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:42 Heat of formation + Delta-G solvation = -79.932272 kcal Electronic energy + Delta-G solvation = -28678.735882 eV Core-core repulsion = 25064.641743 eV Total energy + Delta-G solvation = -3614.094139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51008 -39.54604 -36.89411 -36.11266 -33.62501 -32.54532 -32.20588 -30.59173 -28.19593 -27.67175 -26.13474 -25.43601 -24.47323 -22.96449 -21.86142 -20.93273 -20.41980 -19.38720 -18.20236 -17.61249 -16.83713 -16.45630 -16.27417 -15.47844 -15.12121 -14.62688 -14.09076 -13.94531 -13.81687 -13.71131 -13.56254 -13.12801 -13.00840 -12.83365 -12.58286 -12.42729 -12.35391 -12.06887 -11.86206 -11.69799 -11.39118 -11.18092 -11.14810 -10.89469 -10.82964 -10.78780 -10.64668 -10.46165 -10.42962 -10.38435 -10.13648 -10.05073 -9.94092 -9.78655 -9.31190 -9.26076 -8.84808 -8.49553 -7.31063 -6.02061 -3.95802 2.33170 2.78330 3.27184 3.35920 3.37925 4.43286 4.66273 4.88834 4.98712 5.03240 5.08234 5.13188 5.15356 5.18099 5.28551 5.33148 5.44591 5.46617 5.59835 5.62255 5.64885 5.67908 5.78520 5.83770 5.96104 6.00933 6.05413 6.17061 6.22460 6.23099 6.26840 6.33821 6.37270 6.40898 6.42936 6.48648 6.55202 6.62112 6.67113 6.70497 6.75597 6.89284 6.96232 6.98415 7.24691 7.48904 7.68833 7.83760 7.93599 8.09967 8.69062 9.10025 9.60195 11.09881 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.006300 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.078891 B = 4443.150614 C = 6618.282436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.514 6.514 5 C -0.082 4.082 6 H 0.115 0.885 7 C -0.131 4.131 8 C 0.071 3.929 9 N -0.519 5.519 10 C 0.150 3.850 11 C -0.501 4.501 12 H 0.095 0.905 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.864 3.136 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.270 1.270 19 C 0.087 3.913 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 4.431 7.105 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.402 6.402 5 C -0.102 4.102 6 H 0.133 0.867 7 C -0.188 4.188 8 C -0.058 4.058 9 N -0.242 5.242 10 C 0.024 3.976 11 C -0.539 4.539 12 H 0.113 0.887 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.692 3.308 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.195 1.195 19 C -0.021 4.021 20 C -0.190 4.190 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.167 4.167 26 C -0.140 4.140 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.463 4.336 7.356 14.294 hybrid contribution -1.145 0.414 -1.846 2.211 sum -12.608 4.750 5.511 14.556 Atomic orbital electron populations 1.23214 0.77056 1.03374 1.02298 1.86543 1.22867 1.33881 1.84155 1.24182 0.92451 0.80977 0.71362 1.90628 1.67436 1.36388 1.45699 1.21159 0.85140 1.00190 1.03663 0.86701 1.21636 1.04134 0.98927 0.94086 1.21825 0.90656 0.92302 1.01022 1.62229 1.06675 1.20986 1.34272 1.20379 0.97737 0.94156 0.85359 1.21270 0.91373 1.43317 0.97912 0.88715 1.24861 0.94643 0.95497 0.98220 1.69871 1.08249 1.46807 1.28984 0.87045 0.80663 0.78030 0.85097 1.20551 1.21355 1.19472 1.22078 0.96871 0.86356 0.96767 1.22296 1.00879 0.95004 1.00804 1.21791 1.01555 0.96821 0.95786 1.21812 0.97647 1.01313 0.95610 1.21696 0.97375 0.97780 0.98535 1.21843 0.98754 0.97756 0.98178 1.21954 0.98329 0.99376 0.97055 1.21932 0.93773 0.94924 1.03329 0.92111 0.92145 0.88327 0.88709 0.93115 0.92463 0.94817 0.91192 0.95963 0.98829 0.92831 0.89668 0.90984 0.93115 0.93291 0.90791 0.91023 0.93102 0.92986 0.92236 0.90798 0.93103 0.92847 0.91837 0.91257 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.97 10.47 -39.24 -0.41 -5.38 16 3 C 0.47 7.34 7.26 36.01 0.26 7.60 16 4 O -0.51 -9.03 15.67 -18.75 -0.29 -9.32 16 5 C -0.08 -1.31 2.77 -91.77 -0.25 -1.57 16 6 H 0.12 1.97 6.09 -51.93 -0.32 1.65 16 7 C -0.13 -1.88 9.01 37.16 0.33 -1.55 16 8 C 0.07 1.20 3.32 -3.83 -0.01 1.19 16 9 N -0.52 -9.79 3.94 -228.08 -0.90 -10.69 16 10 C 0.15 3.33 3.44 -4.98 -0.02 3.31 16 11 C -0.50 -12.87 7.31 -34.44 -0.25 -13.12 16 12 H 0.10 2.61 5.60 -52.49 -0.29 2.31 16 13 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 14 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 15 Si 0.86 20.88 27.40 -169.99 -4.66 16.22 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.31 6.65 56.52 0.38 -5.94 16 19 C 0.09 1.50 1.59 -67.70 -0.11 1.39 16 20 C -0.15 -2.55 3.89 -26.73 -0.10 -2.66 16 21 C -0.12 -1.72 5.48 -26.75 -0.15 -1.87 16 22 C -0.13 -1.62 5.47 -26.73 -0.15 -1.76 16 23 C -0.12 -1.39 5.59 -26.72 -0.15 -1.54 16 24 C -0.13 -1.69 5.47 -26.74 -0.15 -1.84 16 25 C -0.13 -1.97 5.48 -26.75 -0.15 -2.11 16 26 C -0.10 -1.89 3.41 -26.73 -0.09 -1.98 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.13 -51.92 -0.42 0.19 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.03 0.61 6.59 -51.93 -0.34 0.27 16 34 H 0.07 1.14 7.92 -51.93 -0.41 0.72 16 35 H 0.02 0.51 5.15 -51.93 -0.27 0.24 16 36 H -0.01 -0.14 5.07 -51.93 -0.26 -0.40 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.09 1.36 2.61 -51.93 -0.14 1.23 16 39 H 0.07 1.39 6.70 -51.93 -0.35 1.04 16 40 H 0.05 0.87 6.43 -51.93 -0.33 0.54 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.05 4.69 -51.93 -0.24 0.81 16 43 H 0.07 0.98 5.47 -51.93 -0.28 0.70 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 47 H 0.07 1.04 5.47 -51.93 -0.28 0.75 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.94 4.69 -51.93 -0.24 0.70 16 51 H 0.07 1.41 7.01 -51.93 -0.36 1.05 16 52 H 0.09 2.07 5.93 -51.92 -0.31 1.77 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -28.61 368.15 -8.56 -37.18 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.62 Total: 5.22 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.01 Total: -13.30 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.12 Total: -36.16 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.70 Total: -14.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.66 Total: 16.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.61 -8.56 -37.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208719121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.754 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds