Wall clock time and date at job start Fri Apr 10 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47110 * 2 1 4 4 H 1.09000 * 109.47249 * 185.26080 * 3 2 1 5 5 C 1.53003 * 109.47383 * 305.26427 * 3 2 1 6 6 C 1.52999 * 109.46876 * 296.59749 * 5 3 2 7 7 C 1.50703 * 109.46772 * 185.10329 * 6 5 3 8 8 O 1.20826 * 119.99804 * 359.97438 * 7 6 5 9 9 O 1.34230 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99732 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46802 * 65.26350 * 3 2 1 12 12 N 1.46904 * 109.47054 * 67.02078 * 11 3 2 13 13 C 1.46900 * 110.99949 * 150.22341 * 12 11 3 14 14 C 1.50700 * 109.47092 * 183.47757 * 13 12 11 15 15 H 1.08009 * 119.99836 * 5.37874 * 14 13 12 16 16 C 1.37872 * 120.00362 * 185.37363 * 14 13 12 17 17 N 1.31514 * 120.00340 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99665 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47192 * 89.99829 * 18 16 14 20 20 H 1.48493 * 109.46918 * 209.99666 * 18 16 14 21 21 H 1.48496 * 109.46825 * 329.99622 * 18 16 14 22 22 C 1.46905 * 110.99661 * 274.17140 * 12 11 3 23 23 C 1.54267 * 110.03274 * 267.39386 * 22 12 11 24 24 C 1.54963 * 104.15484 * 217.13767 * 23 22 12 25 25 C 1.54886 * 102.77990 * 37.88785 * 24 23 22 26 26 C 1.53871 * 110.02753 * 150.17251 * 22 12 11 27 27 H 1.08997 * 109.47088 * 65.92587 * 1 2 3 28 28 H 1.09004 * 109.46898 * 185.92459 * 1 2 3 29 29 H 1.08999 * 109.46939 * 305.92156 * 1 2 3 30 30 H 1.09003 * 109.46765 * 240.00259 * 2 1 3 31 31 H 1.08998 * 109.47323 * 120.00721 * 2 1 3 32 32 H 1.08994 * 109.46644 * 56.59985 * 5 3 2 33 33 H 1.09004 * 109.46970 * 176.59506 * 5 3 2 34 34 H 1.08997 * 109.47315 * 305.09829 * 6 5 3 35 35 H 1.09002 * 109.46993 * 65.10278 * 6 5 3 36 36 H 1.08999 * 109.47127 * 299.99785 * 10 9 7 37 37 H 1.08998 * 109.46997 * 60.00308 * 10 9 7 38 38 H 1.09006 * 109.46772 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47307 * 307.01595 * 11 3 2 40 40 H 1.09002 * 109.47114 * 187.01446 * 11 3 2 41 41 H 1.09007 * 109.46958 * 303.47484 * 13 12 11 42 42 H 1.08999 * 109.47268 * 63.47693 * 13 12 11 43 43 H 0.97005 * 120.00032 * 180.02562 * 17 16 14 44 44 H 1.08997 * 110.01775 * 28.78292 * 22 12 11 45 45 H 1.09004 * 110.48401 * 335.77860 * 23 22 12 46 46 H 1.09000 * 110.48728 * 98.42653 * 23 22 12 47 47 H 1.08999 * 110.72268 * 279.57304 * 24 23 22 48 48 H 1.09007 * 110.92431 * 156.29767 * 24 23 22 49 49 H 1.09003 * 110.48557 * 203.40152 * 25 24 23 50 50 H 1.09002 * 110.59916 * 80.81983 * 25 24 23 51 51 H 1.09005 * 110.03209 * 238.56926 * 26 22 12 52 52 H 1.08999 * 110.03927 * 0.02562 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 -0.0942 5 6 1.4248 2.2010 -1.1778 6 6 1.8926 1.5701 -2.4908 7 6 1.3892 2.3912 -3.6499 8 8 0.7242 3.3793 -3.4466 9 8 1.6788 2.0243 -4.9082 10 6 1.1604 2.8620 -5.9749 11 6 1.6408 2.1244 1.3102 12 7 2.3640 1.5012 2.4267 13 6 2.5938 2.4668 3.5096 14 6 3.4099 1.8172 4.5972 15 1 3.7999 0.8197 4.4570 16 6 3.6590 2.4960 5.7711 17 7 4.3709 1.9289 6.7204 18 14 2.9841 4.2210 6.0137 19 1 1.6377 4.1428 6.6352 20 1 3.8948 4.9886 6.9005 21 1 2.8833 4.9026 4.6983 22 6 1.6494 0.3165 2.9208 23 6 0.7101 0.7108 4.0793 24 6 0.7929 -0.4872 5.0588 25 6 2.2858 -0.8922 4.9793 26 6 2.6506 -0.7025 3.4924 27 1 -0.3633 0.4192 -0.9383 28 1 -0.3633 -1.0222 0.1061 29 1 -0.3633 0.6029 0.8322 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.3379 2.1480 -1.1161 33 1 1.7403 3.2438 -1.1430 34 1 2.9819 1.5410 -2.5122 35 1 1.5004 0.5559 -2.5666 36 1 0.0721 2.8876 -5.9205 37 1 1.5536 3.8728 -5.8668 38 1 1.4661 2.4539 -6.9384 39 1 0.5676 2.0136 1.4653 40 1 1.8933 3.1836 1.2601 41 1 3.1317 3.3304 3.1182 42 1 1.6361 2.7898 3.9178 43 1 4.5458 2.4064 7.5465 44 1 1.0755 -0.1370 2.1127 45 1 1.0617 1.6228 4.5618 46 1 -0.3099 0.8385 3.7168 47 1 0.1529 -1.3036 4.7244 48 1 0.5290 -0.1812 6.0712 49 1 2.4147 -1.9336 5.2740 50 1 2.8938 -0.2410 5.6074 51 1 2.5620 -1.6508 2.9623 52 1 3.6667 -0.3179 3.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208787612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:46 Heat of formation + Delta-G solvation = -76.377957 kcal Electronic energy + Delta-G solvation = -27872.728476 eV Core-core repulsion = 24258.788465 eV Total energy + Delta-G solvation = -3613.940012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66669 -39.31331 -37.21791 -36.42451 -33.82320 -32.48870 -31.60823 -29.17199 -28.18928 -27.94221 -27.50767 -25.80305 -23.92999 -23.23164 -21.50201 -20.77386 -19.71676 -18.95080 -18.35252 -17.69210 -17.05216 -16.87337 -16.60932 -15.71200 -15.33265 -14.97840 -14.27174 -14.11280 -13.98614 -13.70790 -13.61472 -13.24773 -13.11818 -12.65013 -12.44731 -12.31418 -12.20420 -12.11167 -11.88782 -11.69126 -11.46871 -11.17316 -11.04819 -11.01996 -10.72610 -10.66135 -10.54356 -10.40038 -10.24713 -10.20936 -10.18552 -10.05269 -9.89498 -9.79741 -9.34757 -9.20746 -8.76685 -8.48909 -7.20606 -5.99413 -3.94600 2.04135 2.52878 3.29102 3.38313 3.41187 4.46156 4.55460 4.62622 4.82189 4.84531 4.90923 5.01876 5.14616 5.21628 5.26896 5.30670 5.31377 5.40635 5.52334 5.55926 5.64415 5.74224 5.76851 5.89014 5.96030 5.97923 6.08577 6.10334 6.15326 6.21551 6.32013 6.38159 6.41274 6.45338 6.51966 6.56949 6.63381 6.68073 6.73654 6.76968 6.84084 6.95751 7.03451 7.28633 7.35639 7.56700 7.62116 7.72643 8.02186 8.22446 8.73112 9.13429 9.63085 11.11516 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003397 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.559868 B = 8239.724194 C = 9167.259279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C -0.077 4.077 4 H 0.081 0.919 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.458 3.542 8 O -0.508 6.508 9 O -0.363 6.363 10 C 0.035 3.965 11 C 0.053 3.947 12 N -0.520 5.520 13 C 0.154 3.846 14 C -0.510 4.510 15 H 0.108 0.892 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.861 3.139 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.083 3.917 23 C -0.164 4.164 24 C -0.110 4.110 25 C -0.127 4.127 26 C -0.104 4.104 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.022 0.978 42 H -0.007 1.007 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.035 0.965 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.037 0.963 50 H 0.108 0.892 51 H 0.035 0.965 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -3.557 -18.766 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.171 4.171 3 C -0.096 4.096 4 H 0.099 0.901 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.302 3.698 8 O -0.395 6.395 9 O -0.280 6.280 10 C -0.059 4.059 11 C -0.076 4.076 12 N -0.243 5.243 13 C 0.028 3.972 14 C -0.548 4.548 15 H 0.125 0.875 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.689 3.311 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.194 1.194 22 C -0.025 4.025 23 C -0.202 4.202 24 C -0.148 4.148 25 C -0.164 4.164 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.124 0.876 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.056 0.944 50 H 0.126 0.874 51 H 0.053 0.947 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.731 -3.350 -18.737 20.189 hybrid contribution -1.343 1.520 0.418 2.071 sum -8.074 -1.831 -18.319 20.103 Atomic orbital electron populations 1.21945 0.96732 1.01223 1.01658 1.21859 0.95362 0.97067 1.02777 1.21140 1.00828 0.94445 0.93218 0.90081 1.21553 1.01660 0.99941 0.91321 1.21521 1.03640 0.99857 0.89924 1.24120 0.77237 0.84366 0.84105 1.90673 1.36516 1.26740 1.85603 1.86526 1.71123 1.54170 1.16207 1.23238 0.99631 0.94951 0.88086 1.22130 0.96034 0.97791 0.91642 1.62198 1.45328 1.07789 1.08992 1.20397 0.94842 0.91800 0.90128 1.21564 1.31130 1.04637 0.97493 0.87490 1.24846 0.95179 0.96847 0.96154 1.69855 1.39895 1.37573 1.06656 0.87081 0.79075 0.86580 0.78372 1.20591 1.21428 1.19383 1.22489 0.93127 0.91757 0.95129 1.23265 0.97282 1.01657 0.98002 1.22238 0.97228 0.96761 0.98576 1.22567 0.96295 0.99669 0.97886 1.22208 1.01323 0.95681 0.94984 0.93039 0.93231 0.92255 0.92667 0.89383 0.90969 0.91106 0.87474 0.87538 0.92014 0.91946 0.88227 0.94853 0.92050 0.95961 0.99013 0.92869 0.90499 0.87600 0.94631 0.93829 0.92871 0.94440 0.87400 0.94651 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.27 37.16 0.31 -1.46 16 2 C -0.13 -1.57 4.75 -26.73 -0.13 -1.70 16 3 C -0.08 -0.99 2.38 -90.62 -0.22 -1.20 16 4 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 5 C -0.11 -1.22 3.67 -26.73 -0.10 -1.31 16 6 C -0.11 -1.05 5.40 -27.88 -0.15 -1.20 16 7 C 0.46 5.17 7.96 36.01 0.29 5.46 16 8 O -0.51 -7.23 15.67 -18.75 -0.29 -7.52 16 9 O -0.36 -3.65 10.57 -39.26 -0.41 -4.07 16 10 C 0.03 0.26 10.56 101.05 1.07 1.32 16 11 C 0.05 0.84 4.59 -3.82 -0.02 0.83 16 12 N -0.52 -9.96 4.22 -226.73 -0.96 -10.92 16 13 C 0.15 3.51 3.15 -4.98 -0.02 3.50 16 14 C -0.51 -13.11 6.25 -34.44 -0.22 -13.33 16 15 H 0.11 2.87 3.47 -52.48 -0.18 2.69 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -25.97 13.96 55.43 0.77 -25.20 16 18 Si 0.86 20.94 27.37 -169.99 -4.65 16.29 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.40 6.70 56.52 0.38 -6.02 16 22 C 0.08 1.50 1.69 -66.59 -0.11 1.39 16 23 C -0.16 -3.13 5.71 -25.03 -0.14 -3.28 16 24 C -0.11 -2.03 6.91 -24.70 -0.17 -2.20 16 25 C -0.13 -2.52 6.18 -25.07 -0.15 -2.67 16 26 C -0.10 -1.97 5.49 -25.61 -0.14 -2.11 16 27 H 0.05 0.52 6.63 -51.93 -0.34 0.18 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 30 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 31 H 0.09 1.21 4.96 -51.93 -0.26 0.95 16 32 H 0.07 0.85 6.28 -51.93 -0.33 0.53 16 33 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.85 6.90 -51.93 -0.36 0.49 16 36 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.53 5.86 -51.93 -0.30 0.22 16 40 H 0.06 1.02 7.67 -51.93 -0.40 0.62 16 41 H 0.02 0.53 7.40 -51.92 -0.38 0.15 16 42 H -0.01 -0.17 4.97 -51.93 -0.26 -0.43 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 1.23 3.45 -51.93 -0.18 1.05 16 45 H 0.11 2.36 4.07 -51.93 -0.21 2.15 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 2.60 5.96 -51.93 -0.31 2.29 16 51 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.89 5.94 -51.93 -0.31 1.58 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -29.13 373.03 -8.61 -37.75 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.69 Total: 4.19 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.00 Total: -16.15 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.18 Total: -36.12 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.71 Total: -11.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.65 Total: 16.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.13 -8.61 -37.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208787612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.630 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds