Wall clock time and date at job start Fri Apr 10 2020 22:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47110 * 2 1 4 4 H 1.09000 * 109.47249 * 185.26080 * 3 2 1 5 5 C 1.53003 * 109.47383 * 305.26427 * 3 2 1 6 6 C 1.52999 * 109.46876 * 296.59749 * 5 3 2 7 7 C 1.50703 * 109.46772 * 185.10329 * 6 5 3 8 8 O 1.20826 * 119.99804 * 359.97438 * 7 6 5 9 9 O 1.34230 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99732 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46802 * 65.26350 * 3 2 1 12 12 N 1.46904 * 109.47054 * 67.02078 * 11 3 2 13 13 C 1.46900 * 110.99949 * 150.22341 * 12 11 3 14 14 C 1.50700 * 109.47092 * 183.47757 * 13 12 11 15 15 H 1.08009 * 119.99836 * 5.37874 * 14 13 12 16 16 C 1.37872 * 120.00362 * 185.37363 * 14 13 12 17 17 N 1.31514 * 120.00340 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99665 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47192 * 89.99829 * 18 16 14 20 20 H 1.48493 * 109.46918 * 209.99666 * 18 16 14 21 21 H 1.48496 * 109.46825 * 329.99622 * 18 16 14 22 22 C 1.46905 * 110.99661 * 274.17140 * 12 11 3 23 23 C 1.54267 * 110.03274 * 267.39386 * 22 12 11 24 24 C 1.54963 * 104.15484 * 217.13767 * 23 22 12 25 25 C 1.54886 * 102.77990 * 37.88785 * 24 23 22 26 26 C 1.53871 * 110.02753 * 150.17251 * 22 12 11 27 27 H 1.08997 * 109.47088 * 65.92587 * 1 2 3 28 28 H 1.09004 * 109.46898 * 185.92459 * 1 2 3 29 29 H 1.08999 * 109.46939 * 305.92156 * 1 2 3 30 30 H 1.09003 * 109.46765 * 240.00259 * 2 1 3 31 31 H 1.08998 * 109.47323 * 120.00721 * 2 1 3 32 32 H 1.08994 * 109.46644 * 56.59985 * 5 3 2 33 33 H 1.09004 * 109.46970 * 176.59506 * 5 3 2 34 34 H 1.08997 * 109.47315 * 305.09829 * 6 5 3 35 35 H 1.09002 * 109.46993 * 65.10278 * 6 5 3 36 36 H 1.08999 * 109.47127 * 299.99785 * 10 9 7 37 37 H 1.08998 * 109.46997 * 60.00308 * 10 9 7 38 38 H 1.09006 * 109.46772 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47307 * 307.01595 * 11 3 2 40 40 H 1.09002 * 109.47114 * 187.01446 * 11 3 2 41 41 H 1.09007 * 109.46958 * 303.47484 * 13 12 11 42 42 H 1.08999 * 109.47268 * 63.47693 * 13 12 11 43 43 H 0.97005 * 120.00032 * 180.02562 * 17 16 14 44 44 H 1.08997 * 110.01775 * 28.78292 * 22 12 11 45 45 H 1.09004 * 110.48401 * 335.77860 * 23 22 12 46 46 H 1.09000 * 110.48728 * 98.42653 * 23 22 12 47 47 H 1.08999 * 110.72268 * 279.57304 * 24 23 22 48 48 H 1.09007 * 110.92431 * 156.29767 * 24 23 22 49 49 H 1.09003 * 110.48557 * 203.40152 * 25 24 23 50 50 H 1.09002 * 110.59916 * 80.81983 * 25 24 23 51 51 H 1.09005 * 110.03209 * 238.56926 * 26 22 12 52 52 H 1.08999 * 110.03927 * 0.02562 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 -0.0942 5 6 1.4248 2.2010 -1.1778 6 6 1.8926 1.5701 -2.4908 7 6 1.3892 2.3912 -3.6499 8 8 0.7242 3.3793 -3.4466 9 8 1.6788 2.0243 -4.9082 10 6 1.1604 2.8620 -5.9749 11 6 1.6408 2.1244 1.3102 12 7 2.3640 1.5012 2.4267 13 6 2.5938 2.4668 3.5096 14 6 3.4099 1.8172 4.5972 15 1 3.7999 0.8197 4.4570 16 6 3.6590 2.4960 5.7711 17 7 4.3709 1.9289 6.7204 18 14 2.9841 4.2210 6.0137 19 1 1.6377 4.1428 6.6352 20 1 3.8948 4.9886 6.9005 21 1 2.8833 4.9026 4.6983 22 6 1.6494 0.3165 2.9208 23 6 0.7101 0.7108 4.0793 24 6 0.7929 -0.4872 5.0588 25 6 2.2858 -0.8922 4.9793 26 6 2.6506 -0.7025 3.4924 27 1 -0.3633 0.4192 -0.9383 28 1 -0.3633 -1.0222 0.1061 29 1 -0.3633 0.6029 0.8322 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.3379 2.1480 -1.1161 33 1 1.7403 3.2438 -1.1430 34 1 2.9819 1.5410 -2.5122 35 1 1.5004 0.5559 -2.5666 36 1 0.0721 2.8876 -5.9205 37 1 1.5536 3.8728 -5.8668 38 1 1.4661 2.4539 -6.9384 39 1 0.5676 2.0136 1.4653 40 1 1.8933 3.1836 1.2601 41 1 3.1317 3.3304 3.1182 42 1 1.6361 2.7898 3.9178 43 1 4.5458 2.4064 7.5465 44 1 1.0755 -0.1370 2.1127 45 1 1.0617 1.6228 4.5618 46 1 -0.3099 0.8385 3.7168 47 1 0.1529 -1.3036 4.7244 48 1 0.5290 -0.1812 6.0712 49 1 2.4147 -1.9336 5.2740 50 1 2.8938 -0.2410 5.6074 51 1 2.5620 -1.6508 2.9623 52 1 3.6667 -0.3179 3.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208787612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:45 Heat of formation + Delta-G solvation = -92.497272 kcal Electronic energy + Delta-G solvation = -27873.427462 eV Core-core repulsion = 24258.788465 eV Total energy + Delta-G solvation = -3614.638998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.51866 -40.72534 -38.27636 -37.37917 -35.35503 -34.38039 -32.60265 -30.36040 -29.68334 -29.44740 -28.54609 -27.07499 -24.84491 -24.61884 -23.18897 -21.67290 -21.27240 -20.08509 -19.79522 -18.95362 -18.48828 -17.69947 -17.45776 -16.98826 -16.73597 -16.30915 -16.05427 -15.34362 -15.29238 -15.00594 -14.74720 -14.38825 -14.33753 -13.92453 -13.83503 -13.55877 -13.30536 -13.15186 -13.06628 -12.86617 -12.81508 -12.72785 -12.30453 -12.21029 -12.02247 -11.84574 -11.78774 -11.77630 -11.67745 -11.63484 -11.49055 -11.38243 -11.27883 -11.12929 -10.95198 -10.75123 -10.58884 -10.53390 -8.76372 -8.10447 -6.07184 1.20418 1.31866 1.37141 1.43617 1.81338 2.42025 3.22113 3.29524 3.77301 3.93073 3.98234 4.01969 4.09441 4.19409 4.30185 4.32132 4.34176 4.39229 4.40905 4.59680 4.62852 4.68043 4.71901 4.77635 4.79329 4.84853 4.86138 4.90136 4.93737 4.98193 5.02691 5.07635 5.14939 5.20245 5.23013 5.25643 5.26610 5.37562 5.42332 5.44220 5.49380 5.58418 5.64769 5.69857 5.74005 5.82781 5.96812 6.25279 6.60579 6.75293 6.87525 7.05193 7.53446 9.02571 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003397 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.559868 B = 8239.724194 C = 9167.259279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C -0.067 4.067 4 H 0.074 0.926 5 C -0.098 4.098 6 C -0.107 4.107 7 C 0.460 3.540 8 O -0.545 6.545 9 O -0.365 6.365 10 C 0.027 3.973 11 C 0.050 3.950 12 N -0.526 5.526 13 C 0.162 3.838 14 C -0.494 4.494 15 H 0.092 0.908 16 C 0.020 3.980 17 N -0.942 5.942 18 Si 0.911 3.089 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.260 1.260 22 C 0.087 3.913 23 C -0.166 4.166 24 C -0.105 4.105 25 C -0.127 4.127 26 C -0.099 4.099 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.131 0.869 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.010 0.990 42 H -0.009 1.009 43 H 0.258 0.742 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.065 0.935 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 -4.821 -21.503 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C -0.086 4.086 4 H 0.093 0.907 5 C -0.136 4.136 6 C -0.144 4.144 7 C 0.305 3.695 8 O -0.435 6.435 9 O -0.282 6.282 10 C -0.066 4.066 11 C -0.078 4.078 12 N -0.249 5.249 13 C 0.035 3.965 14 C -0.532 4.532 15 H 0.109 0.891 16 C -0.177 4.177 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.184 1.184 22 C -0.021 4.021 23 C -0.205 4.205 24 C -0.142 4.142 25 C -0.165 4.165 26 C -0.137 4.137 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.249 -4.618 -21.510 23.496 hybrid contribution -0.865 1.857 1.179 2.364 sum -9.114 -2.762 -20.331 22.451 Atomic orbital electron populations 1.21929 0.95985 1.01793 1.01691 1.21827 0.95922 0.95825 1.03218 1.21009 1.00551 0.95275 0.91788 0.90716 1.21396 1.01350 0.98971 0.91901 1.21524 1.04621 1.00271 0.87957 1.24434 0.76366 0.83807 0.84871 1.90665 1.38329 1.28378 1.86111 1.86516 1.70960 1.54493 1.16198 1.23507 0.99661 0.94860 0.88562 1.22244 0.96104 0.97443 0.91977 1.62127 1.46823 1.07504 1.08464 1.20175 0.93994 0.91953 0.90367 1.21808 1.29749 1.03883 0.97786 0.89072 1.25456 0.95956 0.99944 0.96342 1.69986 1.42184 1.38972 1.07259 0.86264 0.78382 0.83133 0.78445 1.20325 1.21741 1.18447 1.22580 0.92758 0.91077 0.95636 1.23217 0.98551 1.00342 0.98364 1.22226 0.96525 0.97469 0.98024 1.22443 0.96709 0.99535 0.97814 1.22140 0.99637 0.97279 0.94662 0.91876 0.92018 0.93779 0.90008 0.91128 0.91171 0.92765 0.85854 0.85206 0.92118 0.92361 0.85111 0.94194 0.93245 0.97202 0.99168 0.93243 0.87465 0.91166 0.92514 0.90521 0.93992 0.92758 0.92325 0.91628 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.27 71.98 0.60 -2.30 16 2 C -0.13 -2.61 4.75 30.59 0.15 -2.47 16 3 C -0.07 -1.57 2.38 -10.79 -0.03 -1.60 16 4 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.10 -2.03 3.67 30.59 0.11 -1.92 16 6 C -0.11 -1.68 5.40 29.85 0.16 -1.52 16 7 C 0.46 9.45 7.96 71.24 0.57 10.02 16 8 O -0.54 -14.92 15.67 21.96 0.34 -14.58 16 9 O -0.37 -6.47 10.57 -51.42 -0.54 -7.01 16 10 C 0.03 0.35 10.56 113.37 1.20 1.54 16 11 C 0.05 1.56 4.59 86.30 0.40 1.95 16 12 N -0.53 -19.87 4.22 -871.25 -3.67 -23.54 16 13 C 0.16 7.46 3.15 85.56 0.27 7.73 16 14 C -0.49 -26.16 6.25 25.60 0.16 -26.00 16 15 H 0.09 5.11 3.47 -2.91 -0.01 5.10 16 16 C 0.02 1.10 5.47 84.65 0.46 1.56 16 17 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 18 Si 0.91 44.19 27.37 68.60 1.88 46.07 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.26 -12.11 6.70 99.48 0.67 -11.44 16 22 C 0.09 3.01 1.69 45.64 0.08 3.09 16 23 C -0.17 -6.16 5.71 31.70 0.18 -5.98 16 24 C -0.10 -3.71 6.91 31.91 0.22 -3.49 16 25 C -0.13 -5.05 6.18 31.67 0.20 -4.86 16 26 C -0.10 -3.66 5.49 31.32 0.17 -3.49 16 27 H 0.06 1.03 6.63 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.04 0.95 5.65 -2.39 -0.01 0.94 16 30 H 0.08 1.24 6.91 -2.39 -0.02 1.23 16 31 H 0.07 1.69 4.96 -2.39 -0.01 1.68 16 32 H 0.07 1.50 6.28 -2.39 -0.02 1.48 16 33 H 0.05 1.31 7.95 -2.39 -0.02 1.29 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.13 1.48 6.90 -2.39 -0.02 1.47 16 36 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 37 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 38 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.04 1.19 5.86 -2.39 -0.01 1.17 16 40 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 41 H 0.01 0.48 7.40 -2.38 -0.02 0.47 16 42 H -0.01 -0.42 4.97 -2.39 -0.01 -0.43 16 43 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 44 H 0.11 3.09 3.45 -2.39 -0.01 3.08 16 45 H 0.07 3.14 4.07 -2.38 -0.01 3.13 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 48 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 2.94 5.96 -2.39 -0.01 2.92 16 51 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 52 H 0.05 2.42 5.94 -2.39 -0.01 2.40 16 Total: -1.00 -65.68 373.03 4.06 -61.62 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.87 Total: 21.48 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.89 Total: -27.73 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.37 Total: -79.85 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.20 Total: -21.59 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -65.68 4.06 -61.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208787612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.876 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds