Wall clock time and date at job start Fri Apr 10 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 H 1.08997 * 109.47111 * 184.82303 * 3 2 1 5 5 C 1.53001 * 109.47332 * 64.81717 * 3 2 1 6 6 C 1.53001 * 109.46685 * 65.00237 * 5 3 2 7 7 C 1.50706 * 109.46929 * 179.97438 * 6 5 3 8 8 O 1.20825 * 119.99895 * 359.97438 * 7 6 5 9 9 O 1.34233 * 119.99927 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99684 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46936 * 304.81716 * 3 2 1 12 12 N 1.46898 * 109.47481 * 294.55090 * 11 3 2 13 13 C 1.46897 * 111.00017 * 169.99932 * 12 11 3 14 14 C 1.50701 * 109.47262 * 184.01431 * 13 12 11 15 15 H 1.08008 * 119.99927 * 5.06300 * 14 13 12 16 16 C 1.37876 * 120.00489 * 185.06454 * 14 13 12 17 17 N 1.31512 * 119.99889 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47205 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47009 * 120.00123 * 18 16 14 21 21 H 1.48494 * 109.46872 * 239.99410 * 18 16 14 22 22 C 1.46898 * 110.99792 * 293.95432 * 12 11 3 23 23 C 1.54267 * 110.03515 * 267.34974 * 22 12 11 24 24 C 1.54961 * 104.16194 * 217.13881 * 23 22 12 25 25 C 1.54894 * 102.77615 * 37.88866 * 24 23 22 26 26 C 1.53882 * 110.03043 * 150.13551 * 22 12 11 27 27 H 1.08998 * 109.47298 * 305.12876 * 1 2 3 28 28 H 1.08995 * 109.47360 * 65.13037 * 1 2 3 29 29 H 1.09004 * 109.46521 * 185.13032 * 1 2 3 30 30 H 1.08996 * 109.47105 * 239.99993 * 2 1 3 31 31 H 1.08998 * 109.47174 * 119.99975 * 2 1 3 32 32 H 1.08995 * 109.47296 * 184.99780 * 5 3 2 33 33 H 1.08996 * 109.47332 * 305.00505 * 5 3 2 34 34 H 1.09005 * 109.47417 * 299.99756 * 6 5 3 35 35 H 1.08996 * 109.47717 * 59.99816 * 6 5 3 36 36 H 1.09000 * 109.47297 * 60.00397 * 10 9 7 37 37 H 1.09004 * 109.46891 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47344 * 300.00208 * 10 9 7 39 39 H 1.08999 * 109.47208 * 54.55649 * 11 3 2 40 40 H 1.09001 * 109.47287 * 174.55060 * 11 3 2 41 41 H 1.08997 * 109.47311 * 304.01250 * 13 12 11 42 42 H 1.09002 * 109.47094 * 64.01857 * 13 12 11 43 43 H 0.97002 * 120.00391 * 179.97438 * 17 16 14 44 44 H 1.08997 * 110.01749 * 28.74642 * 22 12 11 45 45 H 1.09007 * 110.48381 * 335.78703 * 23 22 12 46 46 H 1.08994 * 110.48386 * 98.42492 * 23 22 12 47 47 H 1.08991 * 110.72190 * 279.57568 * 24 23 22 48 48 H 1.09003 * 110.92022 * 156.29372 * 24 23 22 49 49 H 1.09003 * 110.48040 * 203.40187 * 25 24 23 50 50 H 1.08998 * 110.59729 * 80.81970 * 25 24 23 51 51 H 1.09005 * 110.03118 * 238.56835 * 26 22 12 52 52 H 1.09001 * 110.03308 * 359.94987 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4438 -0.0864 5 6 1.6313 2.1280 1.3054 6 6 2.3375 1.4491 2.4806 7 6 1.9354 2.1246 3.7664 8 8 1.1637 3.0540 3.7449 9 8 2.4348 1.6938 4.9356 10 6 2.0031 2.3912 6.1337 11 6 1.4334 2.1978 -1.1843 12 7 1.9303 1.6199 -2.4401 13 6 1.1953 2.1561 -3.5934 14 6 1.6635 1.4697 -4.8507 15 1 2.3701 0.6551 -4.7901 16 6 1.1900 1.8816 -6.0783 17 7 0.3293 2.8733 -6.1521 18 14 1.7699 1.0303 -7.6367 19 1 2.7302 -0.0463 -7.2845 20 1 0.6033 0.4423 -8.3429 21 1 2.4374 2.0185 -8.5215 22 6 3.3749 1.8423 -2.5866 23 6 3.6320 3.1416 -3.3776 24 6 4.8700 2.8153 -4.2506 25 6 4.6218 1.3422 -4.6600 26 6 4.0043 0.6987 -3.4014 27 1 -0.3634 0.5913 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 -0.3632 -1.0236 0.0919 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.9164 3.1794 1.2685 33 1 0.5520 2.0485 1.4351 34 1 2.0524 0.3976 2.5176 35 1 3.4168 1.5284 2.3510 36 1 0.9204 2.3113 6.2304 37 1 2.4802 1.9443 7.0060 38 1 2.2852 3.4418 6.0641 39 1 0.3472 2.1143 -1.1506 40 1 1.7188 3.2484 -1.1299 41 1 0.1283 1.9790 -3.4586 42 1 1.3784 3.2276 -3.6747 43 1 -0.0036 3.1634 -7.0158 44 1 3.8444 1.9037 -1.6049 45 1 2.7745 3.3815 -4.0063 46 1 3.8499 3.9652 -2.6977 47 1 5.7870 2.9051 -3.6683 48 1 4.9074 3.4594 -5.1292 49 1 5.5621 0.8539 -4.9160 50 1 3.9252 1.2890 -5.4966 51 1 4.7799 0.2056 -2.8153 52 1 3.2379 -0.0218 -3.6873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208787613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:49 Heat of formation + Delta-G solvation = -87.474342 kcal Electronic energy + Delta-G solvation = -27746.526030 eV Core-core repulsion = 24132.104843 eV Total energy + Delta-G solvation = -3614.421187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63660 -39.04357 -37.22804 -36.42070 -33.75344 -32.48196 -31.53397 -28.88802 -28.00169 -27.87237 -27.21577 -25.86084 -23.78149 -23.29280 -21.73886 -20.77113 -19.80493 -19.08452 -17.99949 -17.56668 -16.86272 -16.80061 -16.47336 -15.61128 -15.05976 -14.87795 -14.59697 -14.26640 -13.90461 -13.72265 -13.50169 -13.06660 -12.91336 -12.66639 -12.45864 -12.33021 -12.14189 -11.96591 -11.61341 -11.55484 -11.34431 -11.17900 -11.02946 -10.96865 -10.74867 -10.59476 -10.50418 -10.35740 -10.25624 -10.22355 -10.18736 -10.09603 -9.95459 -9.76409 -9.39649 -9.14302 -8.77037 -8.38307 -7.04303 -5.98443 -3.95718 2.06273 2.54652 3.30575 3.39759 3.41708 4.43836 4.58047 4.72160 4.83898 4.86949 4.93564 5.05089 5.22138 5.29929 5.36324 5.37341 5.41750 5.47420 5.50956 5.54885 5.74205 5.82890 5.91094 5.96337 6.01057 6.08059 6.13625 6.20024 6.27667 6.31931 6.33950 6.41870 6.46860 6.50274 6.58877 6.60511 6.72428 6.75087 6.76606 6.83024 6.86169 7.08393 7.10781 7.30982 7.49155 7.58894 7.63678 7.95453 8.18218 8.29715 8.65367 9.12216 9.66319 11.13038 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.003137 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.339330 B = 8923.728435 C = 9349.034580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.083 4.083 4 H 0.071 0.929 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.458 3.542 8 O -0.507 6.507 9 O -0.364 6.364 10 C 0.035 3.965 11 C 0.057 3.943 12 N -0.527 5.527 13 C 0.185 3.815 14 C -0.503 4.503 15 H 0.085 0.915 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.881 3.119 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.097 3.903 23 C -0.167 4.167 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.104 4.104 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.006 0.994 43 H 0.258 0.742 44 H 0.055 0.945 45 H 0.118 0.882 46 H 0.035 0.965 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.037 0.963 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -3.288 17.935 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.089 0.911 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.302 3.698 8 O -0.394 6.394 9 O -0.281 6.281 10 C -0.059 4.059 11 C -0.071 4.071 12 N -0.250 5.250 13 C 0.061 3.939 14 C -0.542 4.542 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.710 3.290 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.012 4.012 23 C -0.205 4.205 24 C -0.149 4.149 25 C -0.162 4.162 26 C -0.142 4.142 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.105 0.895 51 H 0.056 0.944 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.574 -3.412 17.855 19.014 hybrid contribution 0.291 0.785 -0.770 1.138 sum 5.865 -2.627 17.085 18.254 Atomic orbital electron populations 1.21858 0.96407 1.00666 1.02141 1.21415 0.95870 0.95776 1.01503 1.21232 1.00317 0.95684 0.92956 0.91127 1.21542 1.01159 0.99622 0.92122 1.21544 1.03520 1.01731 0.88234 1.24106 0.77890 0.81965 0.85878 1.90677 1.33183 1.28008 1.87540 1.86524 1.66701 1.58825 1.16027 1.23236 1.00877 0.97454 0.84342 1.22093 0.99867 0.94848 0.90321 1.62385 1.02662 1.57903 1.02066 1.19888 0.93103 0.93979 0.86965 1.21669 1.25452 1.17282 0.89748 0.89774 1.24945 0.95463 0.95262 0.98893 1.69964 1.31718 1.27747 1.24615 0.86707 0.78636 0.79713 0.83976 1.19417 1.21283 1.21240 1.22064 0.89227 0.93644 0.96302 1.23323 1.00718 0.97035 0.99427 1.22249 0.96876 0.97073 0.98686 1.22509 0.99159 0.94764 0.99780 1.22205 0.98508 0.98248 0.95225 0.93524 0.91457 0.93676 0.90342 0.93467 0.91370 0.90627 0.87325 0.87763 0.91959 0.88243 0.91986 0.91056 0.96251 0.95973 0.97684 0.93228 0.92698 0.86370 0.94612 0.93659 0.92839 0.94163 0.89521 0.94407 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.13 37.16 0.34 -1.68 16 2 C -0.11 -1.38 5.41 -26.73 -0.14 -1.53 16 3 C -0.08 -1.10 2.10 -90.62 -0.19 -1.29 16 4 H 0.07 0.93 6.14 -51.93 -0.32 0.61 16 5 C -0.11 -1.27 3.84 -26.73 -0.10 -1.37 16 6 C -0.11 -1.10 5.57 -27.88 -0.16 -1.25 16 7 C 0.46 5.29 7.96 36.01 0.29 5.58 16 8 O -0.51 -7.37 15.73 -18.75 -0.29 -7.66 16 9 O -0.36 -3.72 10.57 -39.27 -0.41 -4.13 16 10 C 0.03 0.26 10.56 101.05 1.07 1.33 16 11 C 0.06 0.96 4.00 -3.83 -0.02 0.95 16 12 N -0.53 -10.27 3.93 -226.75 -0.89 -11.16 16 13 C 0.19 4.47 4.20 -4.98 -0.02 4.45 16 14 C -0.50 -12.79 5.84 -34.44 -0.20 -12.99 16 15 H 0.08 2.09 3.27 -52.48 -0.17 1.91 16 16 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 17 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.88 20.91 28.50 -169.99 -4.85 16.06 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.10 1.77 2.71 -66.59 -0.18 1.59 16 23 C -0.17 -3.25 5.71 -25.03 -0.14 -3.40 16 24 C -0.11 -1.99 6.91 -24.70 -0.17 -2.16 16 25 C -0.12 -2.32 6.18 -25.07 -0.16 -2.48 16 26 C -0.10 -1.90 5.64 -25.61 -0.14 -2.04 16 27 H 0.05 0.57 6.24 -51.93 -0.32 0.24 16 28 H 0.07 1.04 6.54 -51.93 -0.34 0.70 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 31 H 0.05 0.50 6.35 -51.93 -0.33 0.17 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.08 0.96 6.20 -51.93 -0.32 0.64 16 34 H 0.11 0.92 6.47 -51.93 -0.34 0.58 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.07 1.24 6.03 -51.93 -0.31 0.93 16 40 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.02 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.01 0.15 5.80 -51.93 -0.30 -0.15 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.05 0.92 5.82 -51.93 -0.30 0.61 16 45 H 0.12 2.77 4.07 -51.92 -0.21 2.56 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.86 4.91 -51.93 -0.25 1.60 16 51 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.75 5.93 -51.93 -0.31 1.45 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -28.85 380.19 -8.87 -37.73 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.86 Total: 3.42 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.03 Total: -14.92 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.16 Total: -36.22 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.71 Total: -11.80 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.85 Total: 16.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.85 -8.87 -37.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208787613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.746 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds