Wall clock time and date at job start Fri Apr 10 2020 22:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 H 1.08997 * 109.47111 * 184.82303 * 3 2 1 5 5 C 1.53001 * 109.47332 * 64.81717 * 3 2 1 6 6 C 1.53001 * 109.46685 * 65.00237 * 5 3 2 7 7 C 1.50706 * 109.46929 * 179.97438 * 6 5 3 8 8 O 1.20825 * 119.99895 * 359.97438 * 7 6 5 9 9 O 1.34233 * 119.99927 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99684 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46936 * 304.81716 * 3 2 1 12 12 N 1.46898 * 109.47481 * 294.55090 * 11 3 2 13 13 C 1.46897 * 111.00017 * 169.99932 * 12 11 3 14 14 C 1.50701 * 109.47262 * 184.01431 * 13 12 11 15 15 H 1.08008 * 119.99927 * 5.06300 * 14 13 12 16 16 C 1.37876 * 120.00489 * 185.06454 * 14 13 12 17 17 N 1.31512 * 119.99889 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47205 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47009 * 120.00123 * 18 16 14 21 21 H 1.48494 * 109.46872 * 239.99410 * 18 16 14 22 22 C 1.46898 * 110.99792 * 293.95432 * 12 11 3 23 23 C 1.54267 * 110.03515 * 267.34974 * 22 12 11 24 24 C 1.54961 * 104.16194 * 217.13881 * 23 22 12 25 25 C 1.54894 * 102.77615 * 37.88866 * 24 23 22 26 26 C 1.53882 * 110.03043 * 150.13551 * 22 12 11 27 27 H 1.08998 * 109.47298 * 305.12876 * 1 2 3 28 28 H 1.08995 * 109.47360 * 65.13037 * 1 2 3 29 29 H 1.09004 * 109.46521 * 185.13032 * 1 2 3 30 30 H 1.08996 * 109.47105 * 239.99993 * 2 1 3 31 31 H 1.08998 * 109.47174 * 119.99975 * 2 1 3 32 32 H 1.08995 * 109.47296 * 184.99780 * 5 3 2 33 33 H 1.08996 * 109.47332 * 305.00505 * 5 3 2 34 34 H 1.09005 * 109.47417 * 299.99756 * 6 5 3 35 35 H 1.08996 * 109.47717 * 59.99816 * 6 5 3 36 36 H 1.09000 * 109.47297 * 60.00397 * 10 9 7 37 37 H 1.09004 * 109.46891 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47344 * 300.00208 * 10 9 7 39 39 H 1.08999 * 109.47208 * 54.55649 * 11 3 2 40 40 H 1.09001 * 109.47287 * 174.55060 * 11 3 2 41 41 H 1.08997 * 109.47311 * 304.01250 * 13 12 11 42 42 H 1.09002 * 109.47094 * 64.01857 * 13 12 11 43 43 H 0.97002 * 120.00391 * 179.97438 * 17 16 14 44 44 H 1.08997 * 110.01749 * 28.74642 * 22 12 11 45 45 H 1.09007 * 110.48381 * 335.78703 * 23 22 12 46 46 H 1.08994 * 110.48386 * 98.42492 * 23 22 12 47 47 H 1.08991 * 110.72190 * 279.57568 * 24 23 22 48 48 H 1.09003 * 110.92022 * 156.29372 * 24 23 22 49 49 H 1.09003 * 110.48040 * 203.40187 * 25 24 23 50 50 H 1.08998 * 110.59729 * 80.81970 * 25 24 23 51 51 H 1.09005 * 110.03118 * 238.56835 * 26 22 12 52 52 H 1.09001 * 110.03308 * 359.94987 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4438 -0.0864 5 6 1.6313 2.1280 1.3054 6 6 2.3375 1.4491 2.4806 7 6 1.9354 2.1246 3.7664 8 8 1.1637 3.0540 3.7449 9 8 2.4348 1.6938 4.9356 10 6 2.0031 2.3912 6.1337 11 6 1.4334 2.1978 -1.1843 12 7 1.9303 1.6199 -2.4401 13 6 1.1953 2.1561 -3.5934 14 6 1.6635 1.4697 -4.8507 15 1 2.3701 0.6551 -4.7901 16 6 1.1900 1.8816 -6.0783 17 7 0.3293 2.8733 -6.1521 18 14 1.7699 1.0303 -7.6367 19 1 2.7302 -0.0463 -7.2845 20 1 0.6033 0.4423 -8.3429 21 1 2.4374 2.0185 -8.5215 22 6 3.3749 1.8423 -2.5866 23 6 3.6320 3.1416 -3.3776 24 6 4.8700 2.8153 -4.2506 25 6 4.6218 1.3422 -4.6600 26 6 4.0043 0.6987 -3.4014 27 1 -0.3634 0.5913 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 -0.3632 -1.0236 0.0919 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.9164 3.1794 1.2685 33 1 0.5520 2.0485 1.4351 34 1 2.0524 0.3976 2.5176 35 1 3.4168 1.5284 2.3510 36 1 0.9204 2.3113 6.2304 37 1 2.4802 1.9443 7.0060 38 1 2.2852 3.4418 6.0641 39 1 0.3472 2.1143 -1.1506 40 1 1.7188 3.2484 -1.1299 41 1 0.1283 1.9790 -3.4586 42 1 1.3784 3.2276 -3.6747 43 1 -0.0036 3.1634 -7.0158 44 1 3.8444 1.9037 -1.6049 45 1 2.7745 3.3815 -4.0063 46 1 3.8499 3.9652 -2.6977 47 1 5.7870 2.9051 -3.6683 48 1 4.9074 3.4594 -5.1292 49 1 5.5621 0.8539 -4.9160 50 1 3.9252 1.2890 -5.4966 51 1 4.7799 0.2056 -2.8153 52 1 3.2379 -0.0218 -3.6873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208787613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:48 Heat of formation + Delta-G solvation = -102.766148 kcal Electronic energy + Delta-G solvation = -27747.189133 eV Core-core repulsion = 24132.104843 eV Total energy + Delta-G solvation = -3615.084290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50490 -40.52604 -38.32059 -37.39128 -35.32229 -34.35946 -32.55036 -30.17657 -29.50768 -29.10941 -28.53467 -27.21150 -24.87967 -24.75299 -23.39719 -21.70461 -21.28328 -20.33459 -19.33670 -18.68848 -18.37939 -17.68132 -17.45770 -16.89850 -16.67258 -16.46001 -15.94567 -15.66090 -15.19256 -14.78909 -14.66067 -14.40330 -14.39320 -13.90123 -13.72032 -13.55288 -13.18351 -13.11508 -12.97434 -12.95069 -12.74897 -12.69187 -12.43104 -12.22942 -12.12165 -11.87961 -11.79048 -11.78157 -11.63588 -11.58017 -11.50112 -11.38787 -11.25806 -11.06073 -10.92742 -10.84236 -10.54337 -10.48088 -8.71769 -8.07401 -6.09106 1.20723 1.39439 1.42802 1.52637 1.81120 2.46075 3.28168 3.37708 3.75065 3.89441 3.97399 4.01447 4.07633 4.25389 4.30173 4.32795 4.33921 4.40206 4.42274 4.61490 4.67305 4.71960 4.74985 4.77143 4.80611 4.85319 4.89770 4.93779 4.94325 4.99926 5.07830 5.16779 5.20150 5.23197 5.26651 5.28200 5.37611 5.39393 5.42358 5.43545 5.51311 5.62963 5.67501 5.75933 5.79403 5.88165 5.95274 6.26094 6.54496 6.75643 6.87713 7.08793 7.57288 9.05108 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.003137 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.339330 B = 8923.728435 C = 9349.034580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.069 4.069 4 H 0.084 0.916 5 C -0.099 4.099 6 C -0.106 4.106 7 C 0.460 3.540 8 O -0.546 6.546 9 O -0.364 6.364 10 C 0.027 3.973 11 C 0.056 3.944 12 N -0.523 5.523 13 C 0.202 3.798 14 C -0.491 4.491 15 H 0.095 0.905 16 C 0.001 3.999 17 N -0.942 5.942 18 Si 0.938 3.062 19 H -0.253 1.253 20 H -0.290 1.290 21 H -0.287 1.287 22 C 0.096 3.904 23 C -0.169 4.169 24 C -0.105 4.105 25 C -0.127 4.127 26 C -0.100 4.100 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.059 0.941 37 H 0.132 0.868 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.008 0.992 41 H -0.015 1.015 42 H -0.021 1.021 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.072 0.928 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -5.307 19.976 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.088 4.088 4 H 0.102 0.898 5 C -0.137 4.137 6 C -0.143 4.143 7 C 0.305 3.695 8 O -0.436 6.436 9 O -0.281 6.281 10 C -0.066 4.066 11 C -0.072 4.072 12 N -0.246 5.246 13 C 0.075 3.925 14 C -0.529 4.529 15 H 0.113 0.887 16 C -0.195 4.195 17 N -0.585 5.585 18 Si 0.765 3.235 19 H -0.176 1.176 20 H -0.217 1.217 21 H -0.214 1.214 22 C -0.013 4.013 23 C -0.207 4.207 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.003 0.997 42 H -0.004 1.004 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.091 0.909 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.562 -5.460 19.920 22.359 hybrid contribution -0.646 1.454 -1.295 2.052 sum 7.916 -4.007 18.625 20.630 Atomic orbital electron populations 1.21818 0.97094 1.01206 1.00720 1.21397 0.95204 0.95264 1.02264 1.21100 1.00561 0.95536 0.91558 0.89826 1.21387 1.00766 0.99096 0.92500 1.21536 1.04575 1.02101 0.86105 1.24434 0.77027 0.81267 0.86773 1.90672 1.35020 1.29820 1.88078 1.86513 1.66377 1.58863 1.16310 1.23508 1.01174 0.97597 0.84322 1.22171 0.99405 0.94848 0.90760 1.62312 1.03424 1.57472 1.01396 1.19536 0.91551 0.92537 0.88830 1.21989 1.24303 1.16617 0.89998 0.88710 1.25696 0.95822 0.95958 1.02019 1.70111 1.33665 1.29741 1.24987 0.85792 0.78226 0.79047 0.80420 1.17629 1.21672 1.21373 1.22210 0.88131 0.93234 0.97695 1.23211 0.99938 0.98117 0.99428 1.22241 0.97234 0.96431 0.98406 1.22480 0.99676 0.95547 0.98776 1.22166 0.98725 0.97485 0.95442 0.92630 0.94817 0.92546 0.92188 0.89949 0.92618 0.91838 0.85190 0.85286 0.92265 0.85021 0.92310 0.92613 0.97400 0.99682 1.00368 0.93595 0.89819 0.90976 0.93602 0.90390 0.93797 0.91364 0.92930 0.90924 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.13 71.98 0.66 -3.20 16 2 C -0.10 -2.41 5.41 30.60 0.17 -2.24 16 3 C -0.07 -1.69 2.10 -10.79 -0.02 -1.71 16 4 H 0.08 1.87 6.14 -2.39 -0.01 1.86 16 5 C -0.10 -2.20 3.84 30.59 0.12 -2.08 16 6 C -0.11 -1.70 5.57 29.85 0.17 -1.53 16 7 C 0.46 9.66 7.96 71.24 0.57 10.23 16 8 O -0.55 -15.47 15.73 21.97 0.35 -15.12 16 9 O -0.36 -6.50 10.57 -51.44 -0.54 -7.04 16 10 C 0.03 0.35 10.56 113.37 1.20 1.55 16 11 C 0.06 1.94 4.00 86.30 0.35 2.28 16 12 N -0.52 -20.69 3.93 -871.29 -3.43 -24.12 16 13 C 0.20 10.26 4.20 85.56 0.36 10.62 16 14 C -0.49 -25.73 5.84 25.60 0.15 -25.58 16 15 H 0.10 4.73 3.27 -2.91 -0.01 4.72 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.94 -56.70 13.29 21.45 0.28 -56.41 16 18 Si 0.94 43.83 28.50 68.60 1.96 45.78 16 19 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 C 0.10 3.35 2.71 45.64 0.12 3.48 16 23 C -0.17 -6.51 5.71 31.69 0.18 -6.33 16 24 C -0.11 -3.56 6.91 31.91 0.22 -3.34 16 25 C -0.13 -4.45 6.18 31.67 0.20 -4.26 16 26 C -0.10 -3.39 5.64 31.32 0.18 -3.21 16 27 H 0.05 1.30 6.24 -2.39 -0.01 1.29 16 28 H 0.03 1.07 6.54 -2.39 -0.02 1.06 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.65 7.90 -2.39 -0.02 1.63 16 31 H 0.08 1.37 6.35 -2.39 -0.02 1.36 16 32 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.06 1.57 6.20 -2.39 -0.01 1.55 16 34 H 0.13 1.58 6.47 -2.38 -0.02 1.56 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 39 H 0.06 2.07 6.03 -2.39 -0.01 2.05 16 40 H 0.01 0.28 8.12 -2.39 -0.02 0.26 16 41 H -0.01 -0.85 8.05 -2.39 -0.02 -0.87 16 42 H -0.02 -1.18 5.80 -2.39 -0.01 -1.19 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.08 2.49 5.82 -2.39 -0.01 2.47 16 45 H 0.07 3.52 4.07 -2.38 -0.01 3.51 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.05 2.20 4.91 -2.39 -0.01 2.19 16 51 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 52 H 0.06 2.44 5.93 -2.39 -0.01 2.42 16 Total: -1.00 -66.63 380.19 4.58 -62.05 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.90 Total: 19.68 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.06 Total: -24.81 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -3.14 Total: -80.53 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.20 Total: -22.17 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.96 Total: 45.78 kcal Total: -66.63 4.58 -62.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208787613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.713 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds