Wall clock time and date at job start Fri Apr 10 2020 22:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46835 * 2 1 4 4 N 1.46900 * 109.46982 * 174.85166 * 3 2 1 5 5 C 1.46899 * 111.00146 * 75.68721 * 4 3 2 6 6 C 1.50701 * 109.47095 * 199.55000 * 5 4 3 7 7 H 1.07999 * 119.99707 * 355.07596 * 6 5 4 8 8 C 1.37872 * 119.99918 * 175.07322 * 6 5 4 9 9 N 1.31520 * 120.00433 * 359.72860 * 8 6 5 10 10 Si 1.86805 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46774 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46930 * 120.00158 * 10 8 6 13 13 H 1.48505 * 109.47037 * 240.00384 * 10 8 6 14 14 C 1.46903 * 110.99876 * 199.63559 * 4 3 2 15 15 C 1.53005 * 109.46868 * 66.04533 * 14 4 3 16 16 H 1.08996 * 109.47407 * 304.99961 * 15 14 4 17 17 C 1.53001 * 109.46734 * 65.00013 * 15 14 4 18 18 C 1.53005 * 109.46734 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47051 * 299.99962 * 18 17 15 20 20 H 1.09004 * 109.46890 * 299.99880 * 19 18 17 21 21 C 1.50700 * 109.47015 * 180.02562 * 19 18 17 22 22 O 1.20826 * 120.00103 * 239.99887 * 21 19 18 23 23 O 1.34228 * 120.00130 * 59.99968 * 21 19 18 24 24 C 1.45197 * 117.00352 * 179.97438 * 23 21 19 25 25 C 1.53000 * 109.47441 * 179.97438 * 24 23 21 26 26 C 1.52993 * 109.47201 * 59.99962 * 19 18 17 27 27 C 1.52997 * 109.47582 * 300.00086 * 26 19 18 28 28 H 1.08996 * 109.47359 * 60.00346 * 1 2 3 29 29 H 1.08997 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47439 * 300.00347 * 1 2 3 31 31 H 1.09000 * 109.47726 * 240.00120 * 2 1 3 32 32 H 1.08999 * 109.47131 * 119.99184 * 2 1 3 33 33 H 1.08993 * 109.47414 * 54.84828 * 3 2 1 34 34 H 1.09008 * 109.46781 * 294.85051 * 3 2 1 35 35 H 1.08999 * 109.47574 * 79.54278 * 5 4 3 36 36 H 1.09001 * 109.46937 * 319.54949 * 5 4 3 37 37 H 0.96999 * 120.00096 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47101 * 186.04388 * 14 4 3 39 39 H 1.08997 * 109.47208 * 306.05158 * 14 4 3 40 40 H 1.08993 * 109.47357 * 299.99759 * 17 15 14 41 41 H 1.08994 * 109.47285 * 60.00361 * 17 15 14 42 42 H 1.08999 * 109.47062 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47407 * 59.99948 * 18 17 15 44 44 H 1.09002 * 109.47185 * 300.00549 * 24 23 21 45 45 H 1.09004 * 109.46939 * 60.00034 * 24 23 21 46 46 H 1.08996 * 109.47087 * 299.99820 * 25 24 23 47 47 H 1.09004 * 109.46993 * 60.00109 * 25 24 23 48 48 H 1.09005 * 109.47126 * 180.02562 * 25 24 23 49 49 H 1.08999 * 109.47105 * 179.97438 * 26 19 18 50 50 H 1.09004 * 109.47266 * 60.00148 * 26 19 18 51 51 H 1.09004 * 109.46870 * 300.00304 * 27 26 19 52 52 H 1.08999 * 109.47496 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5037 1.4445 0.1243 5 6 4.1402 1.0665 -1.1445 6 6 5.5537 0.6144 -0.8823 7 1 5.9667 0.6833 0.1133 8 6 6.3195 0.1129 -1.9132 9 7 5.8148 0.0240 -3.1244 10 14 8.0719 -0.4469 -1.5883 11 1 8.3962 -0.2499 -0.1526 12 1 8.2037 -1.8855 -1.9322 13 1 9.0084 0.3492 -2.4216 14 6 3.9908 2.7501 0.5892 15 6 3.5037 2.9966 2.0185 16 1 2.4187 2.8997 2.0545 17 6 4.1390 1.9696 2.9580 18 6 3.6514 2.2157 4.3872 19 6 4.0518 3.6254 4.8270 20 1 5.1369 3.7227 4.7914 21 6 3.5721 3.8676 6.2349 22 8 2.8010 4.7692 6.4638 23 8 4.0016 3.0818 7.2348 24 6 3.4985 3.3736 8.5652 25 6 4.0940 2.3802 9.5650 26 6 3.4167 4.6524 3.8875 27 6 3.9041 4.4064 2.4583 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6032 1.9823 0.8402 34 1 1.7538 1.9291 -0.9326 35 1 4.1520 1.9256 -1.8153 36 1 3.5784 0.2539 -1.6050 37 1 6.3537 -0.3286 -3.8498 38 1 5.0806 2.7591 0.5701 39 1 3.6093 3.5341 -0.0649 40 1 3.8534 0.9654 2.6450 41 1 5.2240 2.0666 2.9221 42 1 4.1043 1.4843 5.0566 43 1 2.5664 2.1185 4.4229 44 1 3.7827 4.3875 8.8469 45 1 2.4120 3.2862 8.5701 46 1 3.8093 1.3664 9.2832 47 1 5.1805 2.4671 9.5602 48 1 3.7159 2.5990 10.5636 49 1 3.7016 5.6567 4.2011 50 1 2.3316 4.5552 3.9231 51 1 4.9892 4.5036 2.4227 52 1 3.4513 5.1377 1.7889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209001613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:52 Heat of formation + Delta-G solvation = -124.469682 kcal Electronic energy + Delta-G solvation = -26981.025590 eV Core-core repulsion = 23365.000165 eV Total energy + Delta-G solvation = -3616.025426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81947 -38.72585 -36.99737 -36.33034 -33.15057 -32.71458 -31.98954 -30.95904 -30.58490 -27.26659 -26.36392 -24.42501 -23.43676 -22.54905 -22.24860 -21.36026 -20.56123 -19.77662 -19.19766 -17.74059 -16.73024 -16.58897 -16.39419 -15.32102 -14.72106 -14.58142 -14.32954 -14.30799 -14.07248 -13.93204 -13.68645 -13.28448 -13.14313 -12.97606 -12.45247 -12.33415 -12.20372 -12.13427 -12.06487 -11.85890 -11.74677 -11.52011 -11.33483 -11.20008 -10.97623 -10.94219 -10.78289 -10.73700 -10.63305 -10.48438 -10.40210 -10.18384 -10.04241 -9.90017 -9.83155 -9.44388 -9.12955 -8.38474 -7.16451 -5.98805 -3.99312 2.09673 2.51501 3.32416 3.40122 3.44531 4.43652 4.45626 4.62194 4.64562 4.69773 4.72690 4.88836 4.96174 5.09332 5.26202 5.33951 5.36915 5.39535 5.44198 5.46672 5.50782 5.55694 5.60341 5.65073 5.67527 5.69855 5.85549 5.94652 5.99950 6.04819 6.09445 6.15160 6.22579 6.23865 6.29751 6.33675 6.36394 6.39196 6.51392 6.57298 6.72361 6.79122 6.86217 6.92532 7.31721 7.40124 7.63711 7.87160 8.18181 8.29550 8.60696 9.08966 9.64613 11.11892 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003210 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.316184 B = 8721.184737 C = 9728.754835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.053 3.947 4 N -0.533 5.533 5 C 0.191 3.809 6 C -0.499 4.499 7 H 0.063 0.937 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.068 3.932 15 C -0.086 4.086 16 H 0.067 0.933 17 C -0.101 4.101 18 C -0.109 4.109 19 C -0.079 4.079 20 H 0.108 0.892 21 C 0.467 3.533 22 O -0.513 6.513 23 O -0.356 6.356 24 C 0.060 3.940 25 C -0.153 4.153 26 C -0.099 4.099 27 C -0.114 4.114 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.020 0.980 35 H -0.014 1.014 36 H 0.034 0.966 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.017 0.983 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 6.088 18.967 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.075 4.075 4 N -0.257 5.257 5 C 0.066 3.934 6 C -0.537 4.537 7 H 0.081 0.919 8 C -0.148 4.148 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.213 1.213 14 C -0.060 4.060 15 C -0.105 4.105 16 H 0.085 0.915 17 C -0.139 4.139 18 C -0.147 4.147 19 C -0.098 4.098 20 H 0.126 0.874 21 C 0.310 3.690 22 O -0.401 6.401 23 O -0.274 6.274 24 C -0.014 4.014 25 C -0.210 4.210 26 C -0.136 4.136 27 C -0.152 4.152 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.003 0.997 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.035 0.965 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.252 5.938 19.242 21.086 hybrid contribution 0.642 0.421 -0.481 0.906 sum -5.610 6.359 18.762 20.589 Atomic orbital electron populations 1.21746 0.96912 1.00939 1.00996 1.21471 0.93741 0.97383 1.02896 1.22105 0.90413 0.96265 0.98749 1.62118 1.03043 1.26842 1.33670 1.19765 0.94555 0.95010 0.84041 1.21205 0.96932 1.40511 0.95087 0.91854 1.24989 0.98501 0.96147 0.95118 1.69970 1.36769 1.46935 1.00407 0.86497 0.84692 0.78261 0.78296 1.19654 1.21133 1.21253 1.21998 1.01122 0.90086 0.92801 1.21278 1.00093 0.93538 0.95599 0.91524 1.21453 1.00365 1.00826 0.91233 1.21595 1.01424 0.92931 0.98733 1.21218 1.02842 0.99360 0.86358 0.87368 1.24061 0.78083 0.78736 0.88108 1.90640 1.33375 1.31291 1.84769 1.86541 1.66794 1.56351 1.17664 1.23004 0.99079 0.99865 0.79428 1.21806 1.02191 0.99574 0.97407 1.21414 1.00873 0.97311 0.94038 1.21590 1.01466 0.97435 0.94702 0.93300 0.93170 0.93356 0.91685 0.91582 0.92240 0.96215 0.99651 0.94787 0.93107 0.90121 0.96521 0.89562 0.91819 0.90939 0.91856 0.91419 0.91358 0.91344 0.91433 0.90359 0.91502 0.91270 0.91545 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.94 5.98 -26.73 -0.16 -2.10 16 3 C 0.05 0.94 4.83 -3.82 -0.02 0.92 16 4 N -0.53 -10.82 3.81 -236.06 -0.90 -11.72 16 5 C 0.19 4.85 4.57 -4.98 -0.02 4.83 16 6 C -0.50 -13.65 8.61 -34.44 -0.30 -13.95 16 7 H 0.06 1.71 7.64 -52.49 -0.40 1.31 16 8 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.07 1.23 4.17 -3.82 -0.02 1.21 16 15 C -0.09 -1.21 2.13 -90.61 -0.19 -1.41 16 16 H 0.07 0.94 6.08 -51.93 -0.32 0.63 16 17 C -0.10 -1.39 5.09 -26.73 -0.14 -1.53 16 18 C -0.11 -1.26 5.14 -26.73 -0.14 -1.40 16 19 C -0.08 -0.88 2.63 -91.77 -0.24 -1.12 16 20 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.47 5.77 7.26 36.01 0.26 6.03 16 22 O -0.51 -7.50 15.73 -18.75 -0.29 -7.79 16 23 O -0.36 -4.03 10.12 -39.25 -0.40 -4.43 16 24 C 0.06 0.53 6.19 37.16 0.23 0.76 16 25 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 26 C -0.10 -1.13 4.49 -26.74 -0.12 -1.25 16 27 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.23 6.89 -51.93 -0.36 0.87 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.93 5.82 -51.93 -0.30 0.63 16 34 H 0.02 0.37 8.00 -51.92 -0.42 -0.05 16 35 H -0.01 -0.39 8.00 -51.93 -0.42 -0.81 16 36 H 0.03 0.93 6.56 -51.93 -0.34 0.59 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 1.60 7.31 -51.93 -0.38 1.22 16 39 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 45 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -30.26 404.53 -10.18 -40.45 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -10.07 Total: -1.82 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.34 Total: -11.32 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.16 Total: -37.60 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.69 Total: -12.22 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.26 -10.18 -40.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209001613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.024 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds