Wall clock time and date at job start Fri Apr 10 2020 22:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46835 * 2 1 4 4 N 1.46900 * 109.46982 * 174.85166 * 3 2 1 5 5 C 1.46899 * 111.00146 * 75.68721 * 4 3 2 6 6 C 1.50701 * 109.47095 * 199.55000 * 5 4 3 7 7 H 1.07999 * 119.99707 * 355.07596 * 6 5 4 8 8 C 1.37872 * 119.99918 * 175.07322 * 6 5 4 9 9 N 1.31520 * 120.00433 * 359.72860 * 8 6 5 10 10 Si 1.86805 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46774 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46930 * 120.00158 * 10 8 6 13 13 H 1.48505 * 109.47037 * 240.00384 * 10 8 6 14 14 C 1.46903 * 110.99876 * 199.63559 * 4 3 2 15 15 C 1.53005 * 109.46868 * 66.04533 * 14 4 3 16 16 H 1.08996 * 109.47407 * 304.99961 * 15 14 4 17 17 C 1.53001 * 109.46734 * 65.00013 * 15 14 4 18 18 C 1.53005 * 109.46734 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47051 * 299.99962 * 18 17 15 20 20 H 1.09004 * 109.46890 * 299.99880 * 19 18 17 21 21 C 1.50700 * 109.47015 * 180.02562 * 19 18 17 22 22 O 1.20826 * 120.00103 * 239.99887 * 21 19 18 23 23 O 1.34228 * 120.00130 * 59.99968 * 21 19 18 24 24 C 1.45197 * 117.00352 * 179.97438 * 23 21 19 25 25 C 1.53000 * 109.47441 * 179.97438 * 24 23 21 26 26 C 1.52993 * 109.47201 * 59.99962 * 19 18 17 27 27 C 1.52997 * 109.47582 * 300.00086 * 26 19 18 28 28 H 1.08996 * 109.47359 * 60.00346 * 1 2 3 29 29 H 1.08997 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47439 * 300.00347 * 1 2 3 31 31 H 1.09000 * 109.47726 * 240.00120 * 2 1 3 32 32 H 1.08999 * 109.47131 * 119.99184 * 2 1 3 33 33 H 1.08993 * 109.47414 * 54.84828 * 3 2 1 34 34 H 1.09008 * 109.46781 * 294.85051 * 3 2 1 35 35 H 1.08999 * 109.47574 * 79.54278 * 5 4 3 36 36 H 1.09001 * 109.46937 * 319.54949 * 5 4 3 37 37 H 0.96999 * 120.00096 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47101 * 186.04388 * 14 4 3 39 39 H 1.08997 * 109.47208 * 306.05158 * 14 4 3 40 40 H 1.08993 * 109.47357 * 299.99759 * 17 15 14 41 41 H 1.08994 * 109.47285 * 60.00361 * 17 15 14 42 42 H 1.08999 * 109.47062 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47407 * 59.99948 * 18 17 15 44 44 H 1.09002 * 109.47185 * 300.00549 * 24 23 21 45 45 H 1.09004 * 109.46939 * 60.00034 * 24 23 21 46 46 H 1.08996 * 109.47087 * 299.99820 * 25 24 23 47 47 H 1.09004 * 109.46993 * 60.00109 * 25 24 23 48 48 H 1.09005 * 109.47126 * 180.02562 * 25 24 23 49 49 H 1.08999 * 109.47105 * 179.97438 * 26 19 18 50 50 H 1.09004 * 109.47266 * 60.00148 * 26 19 18 51 51 H 1.09004 * 109.46870 * 300.00304 * 27 26 19 52 52 H 1.08999 * 109.47496 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5037 1.4445 0.1243 5 6 4.1402 1.0665 -1.1445 6 6 5.5537 0.6144 -0.8823 7 1 5.9667 0.6833 0.1133 8 6 6.3195 0.1129 -1.9132 9 7 5.8148 0.0240 -3.1244 10 14 8.0719 -0.4469 -1.5883 11 1 8.3962 -0.2499 -0.1526 12 1 8.2037 -1.8855 -1.9322 13 1 9.0084 0.3492 -2.4216 14 6 3.9908 2.7501 0.5892 15 6 3.5037 2.9966 2.0185 16 1 2.4187 2.8997 2.0545 17 6 4.1390 1.9696 2.9580 18 6 3.6514 2.2157 4.3872 19 6 4.0518 3.6254 4.8270 20 1 5.1369 3.7227 4.7914 21 6 3.5721 3.8676 6.2349 22 8 2.8010 4.7692 6.4638 23 8 4.0016 3.0818 7.2348 24 6 3.4985 3.3736 8.5652 25 6 4.0940 2.3802 9.5650 26 6 3.4167 4.6524 3.8875 27 6 3.9041 4.4064 2.4583 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6032 1.9823 0.8402 34 1 1.7538 1.9291 -0.9326 35 1 4.1520 1.9256 -1.8153 36 1 3.5784 0.2539 -1.6050 37 1 6.3537 -0.3286 -3.8498 38 1 5.0806 2.7591 0.5701 39 1 3.6093 3.5341 -0.0649 40 1 3.8534 0.9654 2.6450 41 1 5.2240 2.0666 2.9221 42 1 4.1043 1.4843 5.0566 43 1 2.5664 2.1185 4.4229 44 1 3.7827 4.3875 8.8469 45 1 2.4120 3.2862 8.5701 46 1 3.8093 1.3664 9.2832 47 1 5.1805 2.4671 9.5602 48 1 3.7159 2.5990 10.5636 49 1 3.7016 5.6567 4.2011 50 1 2.3316 4.5552 3.9231 51 1 4.9892 4.5036 2.4227 52 1 3.4513 5.1377 1.7889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209001613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:51 Heat of formation + Delta-G solvation = -139.352148 kcal Electronic energy + Delta-G solvation = -26981.670942 eV Core-core repulsion = 23365.000165 eV Total energy + Delta-G solvation = -3616.670778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75971 -39.92655 -38.21974 -37.46700 -34.91559 -34.20441 -32.89982 -32.10804 -31.61604 -29.16106 -27.60265 -25.83449 -24.61683 -23.57293 -23.44619 -22.63976 -21.78606 -20.96143 -20.48470 -18.66126 -18.50911 -17.59024 -17.51175 -16.84042 -16.15528 -16.12290 -15.76525 -15.47792 -15.15238 -15.10734 -14.65113 -14.48017 -14.35406 -13.98840 -13.75769 -13.68005 -13.32189 -13.23872 -13.18766 -13.06146 -12.90260 -12.67883 -12.67164 -12.53943 -12.47555 -12.34481 -12.02430 -12.01285 -11.96951 -11.74053 -11.63253 -11.52230 -11.41556 -11.25615 -10.97822 -10.96592 -10.85960 -10.54579 -8.90143 -8.15063 -6.24094 1.15107 1.42421 1.43419 1.56653 1.69788 2.43481 3.15980 3.32487 3.56561 3.71607 3.80202 4.01106 4.02775 4.09271 4.14127 4.17243 4.29572 4.35486 4.35636 4.40603 4.53319 4.56020 4.61623 4.63254 4.71713 4.78072 4.81601 4.87460 4.93011 4.94421 5.00964 5.05156 5.09324 5.16061 5.17081 5.19938 5.21308 5.24277 5.29313 5.34725 5.39259 5.42722 5.48462 5.50490 5.62841 5.70111 5.73443 6.15266 6.49816 6.72200 6.73328 6.92889 7.45261 8.95762 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003210 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.316184 B = 8721.184737 C = 9728.754835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.054 3.946 4 N -0.534 5.534 5 C 0.208 3.792 6 C -0.509 4.509 7 H 0.064 0.936 8 C -0.002 4.002 9 N -0.939 5.939 10 Si 0.965 3.035 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.070 3.930 15 C -0.075 4.075 16 H 0.072 0.928 17 C -0.096 4.096 18 C -0.098 4.098 19 C -0.077 4.077 20 H 0.122 0.878 21 C 0.471 3.529 22 O -0.539 6.539 23 O -0.361 6.361 24 C 0.052 3.948 25 C -0.147 4.147 26 C -0.091 4.091 27 C -0.107 4.107 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.008 0.992 35 H -0.047 1.047 36 H 0.007 0.993 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.012 0.988 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 6.280 21.416 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.074 4.074 4 N -0.257 5.257 5 C 0.081 3.919 6 C -0.548 4.548 7 H 0.083 0.917 8 C -0.199 4.199 9 N -0.580 5.580 10 Si 0.790 3.210 11 H -0.184 1.184 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.058 4.058 15 C -0.094 4.094 16 H 0.090 0.910 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.095 4.095 20 H 0.140 0.860 21 C 0.315 3.685 22 O -0.428 6.428 23 O -0.278 6.278 24 C -0.022 4.022 25 C -0.204 4.204 26 C -0.129 4.129 27 C -0.145 4.145 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.026 0.974 35 H -0.030 1.030 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.128 6.128 21.720 23.385 hybrid contribution 0.564 0.373 -1.223 1.398 sum -5.564 6.502 20.496 22.211 Atomic orbital electron populations 1.21678 0.93860 1.02183 1.02027 1.21428 0.96376 0.96168 1.01162 1.22213 0.88633 0.97321 0.99256 1.62074 1.04649 1.28470 1.30555 1.19395 0.94182 0.92724 0.85559 1.21497 0.97875 1.40283 0.95124 0.91747 1.25898 1.03010 0.96190 0.94792 1.70104 1.38572 1.47890 1.01423 0.85391 0.79181 0.77703 0.78704 1.18409 1.20723 1.20713 1.22028 0.99860 0.88655 0.95280 1.21178 1.00192 0.95168 0.92848 0.90993 1.21350 1.00025 0.99440 0.92579 1.21465 1.01495 0.93481 0.97139 1.21218 1.03631 0.98832 0.85866 0.86022 1.24155 0.77440 0.78296 0.88580 1.90632 1.34567 1.32427 1.85216 1.86538 1.66703 1.56014 1.18502 1.23277 0.99301 1.00847 0.78739 1.21825 1.02183 0.98756 0.97650 1.21328 1.00550 0.97724 0.93304 1.21522 1.01775 0.95879 0.95348 0.93159 0.91896 0.91373 0.94981 0.91709 0.89417 0.97414 1.02967 0.97521 0.92943 0.92288 0.96990 0.91647 0.92348 0.90095 0.91666 0.91292 0.91447 0.91407 0.91319 0.88220 0.90918 0.91698 0.91207 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.11 -3.79 5.98 30.60 0.18 -3.61 16 3 C 0.05 1.90 4.83 86.31 0.42 2.32 16 4 N -0.53 -22.26 3.81 -900.77 -3.43 -25.69 16 5 C 0.21 11.05 4.57 85.56 0.39 11.44 16 6 C -0.51 -28.62 8.61 25.60 0.22 -28.40 16 7 H 0.06 3.53 7.64 -2.91 -0.02 3.51 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 10 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.07 2.54 4.17 86.30 0.36 2.90 16 15 C -0.08 -2.03 2.13 -10.79 -0.02 -2.06 16 16 H 0.07 1.89 6.08 -2.39 -0.01 1.88 16 17 C -0.10 -2.54 5.09 30.60 0.16 -2.38 16 18 C -0.10 -2.07 5.14 30.60 0.16 -1.92 16 19 C -0.08 -1.55 2.63 -11.54 -0.03 -1.58 16 20 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 21 C 0.47 10.76 7.26 71.24 0.52 11.27 16 22 O -0.54 -14.92 15.73 21.97 0.35 -14.58 16 23 O -0.36 -7.48 10.12 -51.40 -0.52 -8.00 16 24 C 0.05 0.83 6.19 71.98 0.45 1.27 16 25 C -0.15 -1.54 10.29 71.98 0.74 -0.80 16 26 C -0.09 -1.90 4.49 30.59 0.14 -1.76 16 27 C -0.11 -2.40 5.21 30.59 0.16 -2.24 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.26 6.89 -2.39 -0.02 1.25 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.61 5.82 -2.39 -0.01 2.60 16 34 H 0.01 0.29 8.00 -2.38 -0.02 0.27 16 35 H -0.05 -2.77 8.00 -2.39 -0.02 -2.79 16 36 H 0.01 0.39 6.56 -2.39 -0.02 0.37 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.06 2.39 7.31 -2.39 -0.02 2.37 16 39 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 40 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 45 H 0.07 1.09 8.13 -2.38 -0.02 1.07 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 50 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 51 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -66.75 404.53 4.56 -62.19 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.84 Total: 14.42 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 5.01 Total: -17.97 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.15 Total: -82.40 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.17 Total: -22.58 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -66.75 4.56 -62.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209001613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.160 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds