Wall clock time and date at job start Fri Apr 10 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47092 * 2 1 4 4 C 1.53005 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47433 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00133 * 269.99976 * 5 4 3 7 7 H 1.08001 * 119.99554 * 326.41684 * 6 5 4 8 8 C 1.38808 * 120.00044 * 146.41526 * 6 5 4 9 9 N 1.31619 * 120.00153 * 336.81086 * 8 6 5 10 10 Si 1.86798 * 119.99771 * 156.81441 * 8 6 5 11 11 H 1.48501 * 109.47442 * 59.99768 * 10 8 6 12 12 H 1.48504 * 109.47153 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47001 * 299.99819 * 10 8 6 14 14 C 1.46499 * 120.00210 * 89.99842 * 5 4 3 15 15 C 1.53008 * 109.47229 * 95.21292 * 14 5 4 16 16 H 1.09004 * 109.46736 * 55.00402 * 15 14 5 17 17 C 1.52999 * 109.47293 * 175.00078 * 15 14 5 18 18 C 1.52996 * 109.47044 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47177 * 300.00184 * 18 17 15 20 20 H 1.08997 * 109.46949 * 299.99824 * 19 18 17 21 21 C 1.50705 * 109.46829 * 179.97438 * 19 18 17 22 22 O 1.20817 * 120.00028 * 0.02562 * 21 19 18 23 23 O 1.34223 * 119.99461 * 179.97438 * 21 19 18 24 24 C 1.45209 * 116.99824 * 180.02562 * 23 21 19 25 25 C 1.52996 * 109.47008 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.47284 * 59.99963 * 19 18 17 27 27 C 1.52996 * 109.47044 * 300.00118 * 26 19 18 28 28 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47312 * 300.00601 * 1 2 3 30 30 H 1.09003 * 109.46690 * 60.00113 * 1 2 3 31 31 H 1.08999 * 109.47312 * 239.99399 * 2 1 3 32 32 H 1.09003 * 109.46690 * 119.99887 * 2 1 3 33 33 H 1.09008 * 109.47544 * 59.99771 * 3 2 1 34 34 H 1.08998 * 109.47405 * 299.99063 * 3 2 1 35 35 H 1.08999 * 109.46946 * 59.99550 * 4 3 2 36 36 H 1.09003 * 109.46937 * 300.00111 * 4 3 2 37 37 H 0.96996 * 119.99898 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.46825 * 335.21700 * 14 5 4 39 39 H 1.08993 * 109.47581 * 215.21378 * 14 5 4 40 40 H 1.09001 * 109.46979 * 300.00581 * 17 15 14 41 41 H 1.09001 * 109.47115 * 59.99702 * 17 15 14 42 42 H 1.09004 * 109.46943 * 60.00350 * 18 17 15 43 43 H 1.09006 * 109.46754 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46541 * 299.99773 * 24 23 21 45 45 H 1.09002 * 109.46884 * 59.99683 * 24 23 21 46 46 H 1.09001 * 109.47269 * 299.99308 * 25 24 23 47 47 H 1.09002 * 109.47573 * 60.00085 * 25 24 23 48 48 H 1.09008 * 109.46828 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.46964 * 59.99755 * 26 19 18 50 50 H 1.08997 * 109.47100 * 180.02562 * 26 19 18 51 51 H 1.08997 * 109.47038 * 300.00046 * 27 26 19 52 52 H 1.09004 * 109.47296 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2872 3.4695 -1.1844 7 1 4.6404 2.9156 -2.0416 8 6 4.0651 4.8360 -1.2844 9 7 3.2368 5.4308 -0.4522 10 14 4.9418 5.8309 -2.6001 11 1 4.5761 5.3089 -3.9413 12 1 4.5366 7.2557 -2.4955 13 1 6.4102 5.7191 -2.4089 14 6 4.3021 3.5139 1.2703 15 6 5.7792 3.3823 1.6471 16 1 6.3972 3.7488 0.8273 17 6 6.0599 4.2063 2.9052 18 6 7.5371 4.0753 3.2816 19 6 7.8664 2.6055 3.5504 20 1 7.2487 2.2389 4.3702 21 6 9.3216 2.4764 3.9205 22 8 10.0231 3.4591 3.9652 23 8 9.8380 1.2698 4.2016 24 6 11.2467 1.2207 4.5506 25 6 11.6514 -0.2271 4.8349 26 6 7.5856 1.7815 2.2923 27 6 6.1085 1.9126 1.9159 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 3.0819 6.3858 -0.5219 38 1 3.6867 3.0667 2.0510 39 1 4.0464 4.5682 1.1654 40 1 5.8257 5.2535 2.7135 41 1 5.4418 3.8400 3.7249 42 1 8.1548 4.4420 2.4618 43 1 7.7372 4.6627 4.1777 44 1 11.8399 1.6075 3.7220 45 1 11.4224 1.8285 5.4382 46 1 11.0582 -0.6143 5.6633 47 1 11.4758 -0.8346 3.9471 48 1 12.7090 -0.2640 5.0965 49 1 8.2034 2.1482 1.4724 50 1 7.8198 0.7344 2.4840 51 1 5.4908 1.5459 2.7357 52 1 5.9085 1.3259 1.0193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209003146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:56 Heat of formation + Delta-G solvation = -113.401173 kcal Electronic energy + Delta-G solvation = -27158.497995 eV Core-core repulsion = 23542.952536 eV Total energy + Delta-G solvation = -3615.545459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.67269 -38.30088 -36.68471 -35.89812 -33.99189 -32.16153 -31.48211 -30.82001 -30.25509 -27.83771 -25.93130 -24.15317 -23.49242 -22.32050 -22.17472 -20.92976 -20.26654 -19.68465 -19.26748 -17.59362 -16.62202 -16.55652 -16.38405 -14.92242 -14.77383 -14.72325 -14.17981 -13.86797 -13.78285 -13.57131 -13.41344 -13.36071 -13.10314 -12.93802 -12.43323 -12.21209 -12.04735 -11.95384 -11.84831 -11.77267 -11.69940 -11.30152 -11.04798 -10.98489 -10.77045 -10.73049 -10.66618 -10.55492 -10.42587 -10.33571 -10.22311 -10.10163 -9.98871 -9.76316 -9.61512 -9.37289 -9.31418 -8.43496 -6.52254 -5.69239 -3.24745 2.23243 2.63426 3.40547 3.46871 3.49556 4.53711 4.59893 4.69463 4.77627 4.87661 4.93945 5.03632 5.26423 5.33149 5.37143 5.48358 5.49932 5.52609 5.58429 5.62044 5.69058 5.72228 5.79640 5.82892 5.84714 5.94394 6.01601 6.09575 6.23093 6.29257 6.31419 6.39464 6.41129 6.44122 6.47717 6.51839 6.54054 6.62891 6.66336 6.74453 6.78028 7.00366 7.04610 7.12548 7.33370 7.38111 7.77023 7.81087 7.91444 8.57476 9.26735 9.91333 10.46883 11.27850 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003646 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.750704 B = 7677.881565 C = 9276.061689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.146 3.854 5 N -0.583 5.583 6 C -0.252 4.252 7 H 0.059 0.941 8 C 0.009 3.991 9 N -0.887 5.887 10 Si 0.891 3.109 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.146 3.854 15 C -0.105 4.105 16 H 0.069 0.931 17 C -0.109 4.109 18 C -0.100 4.100 19 C -0.075 4.075 20 H 0.105 0.895 21 C 0.466 3.534 22 O -0.511 6.511 23 O -0.358 6.358 24 C 0.059 3.941 25 C -0.152 4.152 26 C -0.108 4.108 27 C -0.104 4.104 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.253 0.747 38 H 0.020 0.980 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.052 0.948 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -10.279 10.062 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.020 3.980 5 N -0.302 5.302 6 C -0.382 4.382 7 H 0.077 0.923 8 C -0.190 4.190 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.020 3.980 15 C -0.126 4.126 16 H 0.088 0.912 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.094 4.094 20 H 0.123 0.877 21 C 0.309 3.691 22 O -0.399 6.399 23 O -0.275 6.275 24 C -0.015 4.015 25 C -0.209 4.209 26 C -0.146 4.146 27 C -0.141 4.141 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.472 -9.825 10.080 16.430 hybrid contribution 0.641 0.709 -0.602 1.129 sum 9.113 -9.117 9.478 16.000 Atomic orbital electron populations 1.21763 0.96898 1.00325 1.01651 1.21535 0.95025 0.98773 1.00775 1.22204 0.99536 0.93767 1.01996 1.20988 0.91214 0.87771 0.98021 1.43855 1.74276 1.09745 1.02347 1.18997 1.37547 0.91022 0.90595 0.92313 1.24994 0.97546 0.98458 0.98038 1.69933 1.33618 1.10011 1.39457 0.86548 0.80136 0.79286 0.81922 1.20949 1.21747 1.21062 1.21046 0.89695 1.01788 0.85466 1.21788 1.01966 0.93033 0.95841 0.91218 1.21537 0.93631 1.01105 0.98480 1.21459 0.98133 0.92188 1.02002 1.21202 0.87437 0.99858 1.00929 0.87702 1.24141 0.91690 0.80601 0.72647 1.90638 1.62053 1.38851 1.48341 1.86537 1.27847 1.33923 1.79223 1.22991 0.78919 0.98737 1.00808 1.21799 1.01555 0.94442 1.03098 1.21571 0.99418 0.98674 0.94918 1.21579 0.92756 0.98693 1.01096 0.93783 0.93131 0.92981 0.92799 0.93016 0.93144 0.92028 0.94399 0.94646 0.93688 0.96152 0.88274 0.91473 0.92522 0.91268 0.91903 0.91373 0.91454 0.91505 0.91398 0.90413 0.91732 0.91522 0.92938 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.73 16 4 C 0.15 2.93 4.75 -4.04 -0.02 2.91 16 5 N -0.58 -13.62 2.19 -173.24 -0.38 -14.00 16 6 C -0.25 -6.63 9.46 -15.06 -0.14 -6.77 16 7 H 0.06 1.56 7.93 -52.49 -0.42 1.15 16 8 C 0.01 0.25 4.99 -17.43 -0.09 0.16 16 9 N -0.89 -24.82 11.24 55.49 0.62 -24.19 16 10 Si 0.89 21.44 29.61 -169.99 -5.03 16.41 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.15 3.21 4.76 -4.04 -0.02 3.19 16 15 C -0.11 -1.95 2.37 -90.62 -0.21 -2.17 16 16 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.11 -1.75 5.20 -26.73 -0.14 -1.89 16 18 C -0.10 -1.48 4.49 -26.73 -0.12 -1.60 16 19 C -0.08 -1.01 2.63 -91.77 -0.24 -1.25 16 20 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.47 6.63 7.25 36.01 0.26 6.89 16 22 O -0.51 -8.53 15.73 -18.74 -0.29 -8.83 16 23 O -0.36 -4.52 10.12 -39.24 -0.40 -4.91 16 24 C 0.06 0.59 6.19 37.16 0.23 0.82 16 25 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 26 C -0.11 -1.50 5.13 -26.73 -0.14 -1.64 16 27 C -0.10 -1.64 4.33 -26.73 -0.12 -1.76 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.04 0.64 6.58 -51.93 -0.34 0.30 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 39 H 0.10 2.53 5.29 -51.93 -0.27 2.26 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 45 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.07 1.28 6.30 -51.93 -0.33 0.95 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -28.75 404.80 -9.88 -38.63 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -10.20 Total: 1.01 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.30 Total: -10.22 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.24 Total: -38.19 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.69 Total: -13.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.75 -9.88 -38.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209003146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.770 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds