Wall clock time and date at job start Fri Apr 10 2020 22:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47092 * 2 1 4 4 C 1.53005 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47433 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00133 * 269.99976 * 5 4 3 7 7 H 1.08001 * 119.99554 * 326.41684 * 6 5 4 8 8 C 1.38808 * 120.00044 * 146.41526 * 6 5 4 9 9 N 1.31619 * 120.00153 * 336.81086 * 8 6 5 10 10 Si 1.86798 * 119.99771 * 156.81441 * 8 6 5 11 11 H 1.48501 * 109.47442 * 59.99768 * 10 8 6 12 12 H 1.48504 * 109.47153 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47001 * 299.99819 * 10 8 6 14 14 C 1.46499 * 120.00210 * 89.99842 * 5 4 3 15 15 C 1.53008 * 109.47229 * 95.21292 * 14 5 4 16 16 H 1.09004 * 109.46736 * 55.00402 * 15 14 5 17 17 C 1.52999 * 109.47293 * 175.00078 * 15 14 5 18 18 C 1.52996 * 109.47044 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47177 * 300.00184 * 18 17 15 20 20 H 1.08997 * 109.46949 * 299.99824 * 19 18 17 21 21 C 1.50705 * 109.46829 * 179.97438 * 19 18 17 22 22 O 1.20817 * 120.00028 * 0.02562 * 21 19 18 23 23 O 1.34223 * 119.99461 * 179.97438 * 21 19 18 24 24 C 1.45209 * 116.99824 * 180.02562 * 23 21 19 25 25 C 1.52996 * 109.47008 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.47284 * 59.99963 * 19 18 17 27 27 C 1.52996 * 109.47044 * 300.00118 * 26 19 18 28 28 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47312 * 300.00601 * 1 2 3 30 30 H 1.09003 * 109.46690 * 60.00113 * 1 2 3 31 31 H 1.08999 * 109.47312 * 239.99399 * 2 1 3 32 32 H 1.09003 * 109.46690 * 119.99887 * 2 1 3 33 33 H 1.09008 * 109.47544 * 59.99771 * 3 2 1 34 34 H 1.08998 * 109.47405 * 299.99063 * 3 2 1 35 35 H 1.08999 * 109.46946 * 59.99550 * 4 3 2 36 36 H 1.09003 * 109.46937 * 300.00111 * 4 3 2 37 37 H 0.96996 * 119.99898 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.46825 * 335.21700 * 14 5 4 39 39 H 1.08993 * 109.47581 * 215.21378 * 14 5 4 40 40 H 1.09001 * 109.46979 * 300.00581 * 17 15 14 41 41 H 1.09001 * 109.47115 * 59.99702 * 17 15 14 42 42 H 1.09004 * 109.46943 * 60.00350 * 18 17 15 43 43 H 1.09006 * 109.46754 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46541 * 299.99773 * 24 23 21 45 45 H 1.09002 * 109.46884 * 59.99683 * 24 23 21 46 46 H 1.09001 * 109.47269 * 299.99308 * 25 24 23 47 47 H 1.09002 * 109.47573 * 60.00085 * 25 24 23 48 48 H 1.09008 * 109.46828 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.46964 * 59.99755 * 26 19 18 50 50 H 1.08997 * 109.47100 * 180.02562 * 26 19 18 51 51 H 1.08997 * 109.47038 * 300.00046 * 27 26 19 52 52 H 1.09004 * 109.47296 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2872 3.4695 -1.1844 7 1 4.6404 2.9156 -2.0416 8 6 4.0651 4.8360 -1.2844 9 7 3.2368 5.4308 -0.4522 10 14 4.9418 5.8309 -2.6001 11 1 4.5761 5.3089 -3.9413 12 1 4.5366 7.2557 -2.4955 13 1 6.4102 5.7191 -2.4089 14 6 4.3021 3.5139 1.2703 15 6 5.7792 3.3823 1.6471 16 1 6.3972 3.7488 0.8273 17 6 6.0599 4.2063 2.9052 18 6 7.5371 4.0753 3.2816 19 6 7.8664 2.6055 3.5504 20 1 7.2487 2.2389 4.3702 21 6 9.3216 2.4764 3.9205 22 8 10.0231 3.4591 3.9652 23 8 9.8380 1.2698 4.2016 24 6 11.2467 1.2207 4.5506 25 6 11.6514 -0.2271 4.8349 26 6 7.5856 1.7815 2.2923 27 6 6.1085 1.9126 1.9159 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 3.0819 6.3858 -0.5219 38 1 3.6867 3.0667 2.0510 39 1 4.0464 4.5682 1.1654 40 1 5.8257 5.2535 2.7135 41 1 5.4418 3.8400 3.7249 42 1 8.1548 4.4420 2.4618 43 1 7.7372 4.6627 4.1777 44 1 11.8399 1.6075 3.7220 45 1 11.4224 1.8285 5.4382 46 1 11.0582 -0.6143 5.6633 47 1 11.4758 -0.8346 3.9471 48 1 12.7090 -0.2640 5.0965 49 1 8.2034 2.1482 1.4724 50 1 7.8198 0.7344 2.4840 51 1 5.4908 1.5459 2.7357 52 1 5.9085 1.3259 1.0193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209003146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:55 Heat of formation + Delta-G solvation = -125.113558 kcal Electronic energy + Delta-G solvation = -27159.005882 eV Core-core repulsion = 23542.952536 eV Total energy + Delta-G solvation = -3616.053346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.76927 -39.64365 -37.91354 -37.34592 -35.48907 -33.52225 -32.81789 -32.08526 -31.55385 -29.36704 -27.54558 -25.74097 -24.56571 -23.55895 -23.28892 -22.32305 -21.58686 -21.27380 -20.58147 -18.67748 -18.46084 -17.59659 -17.50825 -16.75236 -16.20700 -16.09433 -15.47103 -15.27954 -15.17369 -15.00166 -14.62794 -14.57672 -14.34941 -13.76426 -13.71994 -13.63445 -13.35234 -13.20099 -13.04066 -12.96075 -12.89329 -12.73962 -12.59753 -12.47065 -12.34639 -12.22288 -12.01106 -11.83640 -11.74987 -11.70380 -11.63892 -11.52278 -11.48956 -11.23447 -11.22431 -10.91078 -10.79214 -10.42992 -8.48802 -7.71539 -5.30584 1.13215 1.44386 1.48214 1.52983 1.67239 2.54465 3.29714 3.55007 3.70142 3.75210 3.83486 4.00146 4.08565 4.21824 4.22273 4.28826 4.31916 4.35114 4.41775 4.48706 4.53861 4.60652 4.64269 4.66116 4.70342 4.84812 4.92470 4.92923 4.95372 5.04298 5.06769 5.10882 5.13278 5.14909 5.17313 5.20437 5.23400 5.26829 5.34841 5.41871 5.45727 5.53076 5.58151 5.61803 5.66744 5.76790 5.81153 6.03784 6.54240 6.70574 7.26244 8.00433 8.47800 9.19806 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003646 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.750704 B = 7677.881565 C = 9276.061689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.124 4.124 4 C 0.145 3.855 5 N -0.595 5.595 6 C -0.254 4.254 7 H 0.052 0.948 8 C -0.035 4.035 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.285 1.285 14 C 0.149 3.851 15 C -0.096 4.096 16 H 0.032 0.968 17 C -0.102 4.102 18 C -0.093 4.093 19 C -0.071 4.071 20 H 0.133 0.867 21 C 0.470 3.530 22 O -0.542 6.542 23 O -0.357 6.357 24 C 0.050 3.950 25 C -0.145 4.145 26 C -0.099 4.099 27 C -0.095 4.095 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.248 0.752 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.047 0.953 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.953 -12.872 11.589 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.020 3.980 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.069 0.931 8 C -0.232 4.232 9 N -0.558 5.558 10 Si 0.771 3.229 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.212 1.212 14 C 0.023 3.977 15 C -0.117 4.117 16 H 0.051 0.949 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.089 4.089 20 H 0.151 0.849 21 C 0.315 3.685 22 O -0.432 6.432 23 O -0.274 6.274 24 C -0.023 4.023 25 C -0.202 4.202 26 C -0.137 4.137 27 C -0.132 4.132 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.108 0.892 51 H 0.092 0.908 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.147 -12.458 11.607 19.329 hybrid contribution 0.452 1.459 -1.066 1.863 sum 9.599 -10.999 10.541 18.007 Atomic orbital electron populations 1.21748 0.95735 1.01883 1.01150 1.21463 0.96044 0.95704 1.02086 1.22036 0.98833 0.96218 0.99374 1.21109 0.91697 0.86071 0.99130 1.44044 1.74756 1.10824 1.01912 1.19172 1.36535 0.91389 0.91422 0.93060 1.25529 0.98451 0.99323 0.99936 1.70065 1.35026 1.09649 1.41028 0.85735 0.78965 0.77873 0.80299 1.20396 1.22117 1.21200 1.20939 0.91998 0.99569 0.85200 1.21568 0.98681 0.95666 0.95765 0.94944 1.21441 0.95030 0.99681 0.97853 1.21336 0.96526 0.93718 1.01535 1.21163 0.87713 0.98518 1.01552 0.84926 1.24173 0.91704 0.80676 0.71956 1.90633 1.62786 1.39922 1.49832 1.86526 1.29342 1.32771 1.78742 1.23299 0.77435 1.00893 1.00704 1.21818 1.02930 0.92171 1.03287 1.21466 0.97550 1.00082 0.94581 1.21451 0.94510 0.95962 1.01281 0.91150 0.93251 0.93979 0.92077 0.91014 0.94690 0.95696 0.94572 0.92034 0.94304 0.95285 0.91933 0.93262 0.90343 0.93461 0.90947 0.91864 0.91248 0.90989 0.91371 0.88243 0.93401 0.89159 0.90849 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.11 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.12 -4.75 5.54 30.59 0.17 -4.58 16 4 C 0.15 5.73 4.75 86.38 0.41 6.14 16 5 N -0.60 -28.27 2.19 -701.99 -1.54 -29.80 16 6 C -0.25 -13.75 9.46 84.03 0.79 -12.95 16 7 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 8 C -0.04 -1.96 4.99 84.86 0.42 -1.53 16 9 N -0.91 -52.98 11.24 21.65 0.24 -52.73 16 10 Si 0.94 45.35 29.61 68.60 2.03 47.38 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 14 C 0.15 6.64 4.76 86.38 0.41 7.05 16 15 C -0.10 -3.57 2.37 -10.79 -0.03 -3.60 16 16 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 17 C -0.10 -3.22 5.20 30.59 0.16 -3.06 16 18 C -0.09 -2.68 4.49 30.59 0.14 -2.54 16 19 C -0.07 -1.74 2.63 -11.54 -0.03 -1.77 16 20 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 21 C 0.47 12.56 7.25 71.24 0.52 13.08 16 22 O -0.54 -17.65 15.73 21.99 0.35 -17.30 16 23 O -0.36 -8.18 10.12 -51.35 -0.52 -8.70 16 24 C 0.05 0.91 6.19 71.98 0.45 1.35 16 25 C -0.15 -1.66 10.29 71.98 0.74 -0.92 16 26 C -0.10 -2.55 5.13 30.59 0.16 -2.39 16 27 C -0.09 -2.82 4.33 30.59 0.13 -2.68 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 36 H 0.06 2.10 6.58 -2.39 -0.02 2.09 16 37 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 39 H 0.06 3.33 5.29 -2.39 -0.01 3.31 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.55 8.10 -2.39 -0.02 1.54 16 43 H 0.07 1.95 8.10 -2.38 -0.02 1.93 16 44 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 45 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.09 1.95 8.11 -2.39 -0.02 1.93 16 51 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.06 2.00 6.30 -2.38 -0.02 1.98 16 Total: -1.00 -64.45 404.80 6.74 -57.71 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.84 Total: 17.96 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.34 Total: -14.52 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.29 Total: -82.54 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.17 Total: -26.00 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -64.45 6.74 -57.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209003146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.400 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds