Wall clock time and date at job start Fri Apr 10 2020 22:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47061 * 2 1 4 4 C 1.53000 * 109.46874 * 184.91668 * 3 2 1 5 5 N 1.46901 * 109.46735 * 174.83910 * 4 3 2 6 6 C 1.46907 * 110.99794 * 199.68119 * 5 4 3 7 7 C 1.50703 * 109.47014 * 66.04298 * 6 5 4 8 8 H 1.07998 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99683 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99775 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00099 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47404 * 89.99486 * 11 9 7 13 13 H 1.48504 * 109.47043 * 209.99414 * 11 9 7 14 14 H 1.48503 * 109.46978 * 329.98999 * 11 9 7 15 15 C 1.46900 * 111.00198 * 75.72731 * 5 4 3 16 16 C 1.53001 * 109.47110 * 199.72712 * 15 5 4 17 17 C 1.52998 * 109.46247 * 184.51086 * 16 15 5 18 18 C 1.53022 * 109.46057 * 179.84268 * 17 16 15 19 19 C 1.52961 * 109.43033 * 59.79334 * 18 17 16 20 20 C 1.52955 * 109.82021 * 300.29807 * 19 18 17 21 21 C 1.52998 * 109.46196 * 64.46562 * 16 15 5 22 22 O 1.43703 * 109.40504 * 60.40236 * 19 18 17 23 23 C 1.44801 * 104.79051 * 95.49535 * 22 19 18 24 24 C 1.54919 * 101.72515 * 36.06680 * 23 22 19 25 25 O 1.43302 * 109.64635 * 179.72432 * 19 18 17 26 26 H 1.08996 * 109.46897 * 184.96272 * 1 2 3 27 27 H 1.08999 * 109.47005 * 304.96424 * 1 2 3 28 28 H 1.09001 * 109.46999 * 64.96091 * 1 2 3 29 29 H 1.08999 * 109.47154 * 240.00231 * 2 1 3 30 30 H 1.08998 * 109.47341 * 119.99997 * 2 1 3 31 31 H 1.08993 * 109.47032 * 64.91672 * 3 2 1 32 32 H 1.09004 * 109.46712 * 304.91313 * 3 2 1 33 33 H 1.08999 * 109.47482 * 54.83649 * 4 3 2 34 34 H 1.09000 * 109.46805 * 294.83479 * 4 3 2 35 35 H 1.08994 * 109.46871 * 186.04542 * 6 5 4 36 36 H 1.08997 * 109.46980 * 306.04210 * 6 5 4 37 37 H 0.96994 * 119.99991 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46912 * 79.72857 * 15 5 4 39 39 H 1.08996 * 109.46796 * 319.73246 * 15 5 4 40 40 H 1.08993 * 109.45558 * 304.48967 * 16 15 5 41 41 H 1.09003 * 109.46923 * 299.83494 * 17 16 15 42 42 H 1.09000 * 109.47306 * 59.84166 * 17 16 15 43 43 H 1.08993 * 109.47830 * 179.78235 * 18 17 16 44 44 H 1.09004 * 109.47191 * 299.80405 * 18 17 16 45 45 H 1.09002 * 109.47928 * 299.70495 * 20 19 18 46 46 H 1.09002 * 109.48035 * 179.68124 * 20 19 18 47 47 H 1.08997 * 109.47152 * 300.15332 * 21 16 15 48 48 H 1.08995 * 109.46793 * 60.14885 * 21 16 15 49 49 H 1.09004 * 110.97735 * 277.95807 * 23 22 19 50 50 H 1.08991 * 111.01036 * 154.18744 * 23 22 19 51 51 H 1.09006 * 110.69619 * 206.08300 * 24 23 22 52 52 H 1.08991 * 110.69573 * 82.87644 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5650 1.4443 -0.1236 5 7 4.0446 2.8273 -0.2479 6 6 5.3954 2.8662 -0.8240 7 6 5.3488 2.3735 -2.2475 8 1 4.4096 2.0629 -2.6809 9 6 6.5050 2.3203 -2.9967 10 7 6.4645 1.8899 -4.2388 11 14 8.1293 2.8582 -2.2472 12 1 8.7876 1.6930 -1.6038 13 1 9.0112 3.3989 -3.3126 14 1 7.8803 3.9105 -1.2293 15 6 4.0051 3.5167 1.0486 16 6 4.0262 5.0298 0.8225 17 6 4.0986 5.7460 2.1726 18 6 4.1236 7.2592 1.9462 19 6 2.8544 7.6839 1.2056 20 6 2.7757 6.9657 -0.1425 21 6 2.7531 5.4530 0.0870 22 8 1.7037 7.3434 1.9962 23 6 1.3838 8.5537 2.7238 24 6 1.7234 9.6474 1.6805 25 8 2.8700 9.1016 0.9968 26 1 -0.3633 -1.0238 0.0889 27 1 -0.3633 0.5889 0.8422 28 1 -0.3633 0.4350 -0.9311 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7504 1.9303 0.9307 32 1 1.6065 1.9811 -0.8428 33 1 3.8586 0.8771 -1.0069 34 1 4.0020 0.9866 0.7639 35 1 5.7686 3.8901 -0.8060 36 1 6.0580 2.2276 -0.2400 37 1 7.2779 1.8520 -4.7657 38 1 4.8724 3.2258 1.6413 39 1 3.0937 3.2411 1.5790 40 1 4.8970 5.2952 0.2233 41 1 3.2264 5.4825 2.7709 42 1 5.0045 5.4420 2.6971 43 1 4.1713 7.7698 2.9080 44 1 4.9976 7.5231 1.3507 45 1 3.6446 7.2288 -0.7458 46 1 1.8668 7.2680 -0.6629 47 1 2.7010 4.9405 -0.8735 48 1 1.8822 5.1895 0.6871 49 1 2.0096 8.6528 3.6108 50 1 0.3270 8.5824 2.9891 51 1 1.9797 10.5847 2.1744 52 1 0.8940 9.7899 0.9879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209101716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:59 Heat of formation + Delta-G solvation = -113.557572 kcal Electronic energy + Delta-G solvation = -27799.788839 eV Core-core repulsion = 24184.236598 eV Total energy + Delta-G solvation = -3615.552241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89570 -38.13470 -36.27271 -35.03225 -34.19274 -32.44697 -31.09537 -30.64139 -28.91464 -28.68810 -26.69139 -24.21662 -23.39750 -22.70867 -22.52544 -21.22611 -20.60377 -19.71850 -19.17656 -17.22016 -16.88777 -16.75980 -15.57622 -15.40082 -15.07865 -14.66204 -14.57200 -14.26301 -13.88463 -13.72925 -13.58873 -13.40279 -13.00568 -12.84427 -12.72442 -12.46410 -12.40643 -12.27093 -12.05366 -11.98563 -11.88848 -11.54560 -11.35112 -10.98332 -10.90376 -10.75612 -10.66200 -10.64518 -10.41195 -10.33504 -10.27012 -10.10797 -9.99147 -9.75723 -9.60488 -9.30634 -9.16256 -8.53607 -7.28221 -6.01742 -3.97964 3.29190 3.30072 3.38065 3.40290 3.88121 4.38415 4.45087 4.62094 4.66527 4.73118 4.85499 5.00499 5.07828 5.22887 5.29439 5.30126 5.31487 5.33601 5.44753 5.47126 5.51502 5.62261 5.64297 5.71019 5.76805 5.78644 5.87271 6.00877 6.05083 6.07705 6.11224 6.12964 6.17367 6.21278 6.26904 6.32335 6.39760 6.42607 6.51506 6.54088 6.76846 6.81364 6.87566 6.89444 7.00270 7.07056 7.07735 7.68474 8.00966 8.16199 8.71609 9.08038 9.60972 11.11492 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.004445 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.820156 B = 6297.872431 C = 8264.340826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.060 3.940 5 N -0.524 5.524 6 C 0.161 3.839 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.872 3.128 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.059 3.941 16 C -0.083 4.083 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.259 3.741 20 C -0.119 4.119 21 C -0.096 4.096 22 O -0.362 6.362 23 C 0.013 3.987 24 C 0.020 3.980 25 O -0.381 6.381 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.015 0.985 35 H 0.030 0.970 36 H -0.020 1.020 37 H 0.262 0.738 38 H 0.022 0.978 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.105 0.895 51 H 0.095 0.905 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 10.266 15.300 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.068 4.068 5 N -0.247 5.247 6 C 0.035 3.965 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.700 3.300 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.069 4.069 16 C -0.102 4.102 17 C -0.145 4.145 18 C -0.170 4.170 19 C 0.183 3.817 20 C -0.157 4.157 21 C -0.133 4.133 22 O -0.283 6.283 23 C -0.064 4.064 24 C -0.056 4.056 25 O -0.302 6.302 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.033 0.967 35 H 0.047 0.953 36 H -0.002 1.002 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.123 0.877 51 H 0.113 0.887 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.917 10.373 14.694 21.041 hybrid contribution 1.543 0.054 1.033 1.857 sum -9.375 10.427 15.727 21.070 Atomic orbital electron populations 1.21752 0.96406 1.00844 1.01617 1.21502 0.95263 0.97711 1.01762 1.21588 0.96220 0.95467 1.01580 1.22051 0.93740 0.90292 1.00702 1.61892 1.26948 1.14604 1.21235 1.20208 0.84567 0.96200 0.95550 1.21054 0.96147 1.42373 0.94762 0.90085 1.24885 0.98633 0.95039 0.94718 1.69893 1.28311 1.47510 1.08342 0.86909 0.84484 0.79426 0.79202 1.20477 1.21249 1.19185 1.22100 0.99446 0.93734 0.91660 1.21160 0.99230 0.94549 0.95230 1.21489 1.01932 0.93020 0.98109 1.22056 0.97240 0.97404 1.00311 1.23453 0.86518 0.79886 0.91863 1.21879 1.03157 0.96805 0.93831 1.21359 0.97134 0.92457 1.02368 1.89304 1.47525 1.32631 1.58797 1.24333 1.02621 0.83841 0.95581 1.24146 0.89496 0.97811 0.94176 1.88903 1.46057 1.20462 1.74812 0.93355 0.93164 0.92751 0.91781 0.92769 0.93175 0.91252 0.89239 0.96650 0.95253 1.00246 0.92767 0.96006 0.91878 0.90813 0.91425 0.91974 0.91898 0.90318 0.90099 0.91347 0.89353 0.92089 0.91013 0.87677 0.88677 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.74 5.26 -26.73 -0.14 -1.88 16 4 C 0.06 1.14 4.79 -3.82 -0.02 1.12 16 5 N -0.52 -10.59 3.78 -236.07 -0.89 -11.49 16 6 C 0.16 3.86 3.62 -4.97 -0.02 3.84 16 7 C -0.51 -14.16 8.79 -34.44 -0.30 -14.46 16 8 H 0.08 2.47 7.56 -52.49 -0.40 2.08 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 11 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 15 C 0.06 1.01 4.20 -3.82 -0.02 0.99 16 16 C -0.08 -1.31 2.24 -90.62 -0.20 -1.51 16 17 C -0.11 -1.43 5.06 -26.72 -0.14 -1.56 16 18 C -0.13 -1.68 5.29 -26.74 -0.14 -1.82 16 19 C 0.26 3.43 1.03 -26.77 -0.03 3.40 16 20 C -0.12 -1.72 5.34 -26.75 -0.14 -1.86 16 21 C -0.10 -1.48 4.95 -26.72 -0.13 -1.62 16 22 O -0.36 -4.59 9.67 -59.04 -0.57 -5.16 16 23 C 0.01 0.11 7.91 38.17 0.30 0.42 16 24 C 0.02 0.18 8.08 38.17 0.31 0.49 16 25 O -0.38 -4.97 10.87 -59.04 -0.64 -5.61 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.74 6.89 -51.93 -0.36 0.38 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 34 H 0.02 0.28 8.00 -51.93 -0.42 -0.14 16 35 H 0.03 0.72 5.63 -51.93 -0.29 0.43 16 36 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 39 H 0.06 0.99 6.56 -51.93 -0.34 0.65 16 40 H 0.07 1.32 6.67 -51.93 -0.35 0.97 16 41 H 0.07 0.89 7.69 -51.93 -0.40 0.49 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.57 7.73 -51.93 -0.40 1.17 16 48 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -30.64 391.34 -10.67 -41.31 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -10.01 Total: 0.70 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.55 Total: -15.83 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.12 Total: -38.28 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.64 -10.67 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209101716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.248 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds