Wall clock time and date at job start Fri Apr 10 2020 22:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47061 * 2 1 4 4 C 1.53000 * 109.46874 * 184.91668 * 3 2 1 5 5 N 1.46901 * 109.46735 * 174.83910 * 4 3 2 6 6 C 1.46907 * 110.99794 * 199.68119 * 5 4 3 7 7 C 1.50703 * 109.47014 * 66.04298 * 6 5 4 8 8 H 1.07998 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99683 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99775 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00099 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47404 * 89.99486 * 11 9 7 13 13 H 1.48504 * 109.47043 * 209.99414 * 11 9 7 14 14 H 1.48503 * 109.46978 * 329.98999 * 11 9 7 15 15 C 1.46900 * 111.00198 * 75.72731 * 5 4 3 16 16 C 1.53001 * 109.47110 * 199.72712 * 15 5 4 17 17 C 1.52998 * 109.46247 * 184.51086 * 16 15 5 18 18 C 1.53022 * 109.46057 * 179.84268 * 17 16 15 19 19 C 1.52961 * 109.43033 * 59.79334 * 18 17 16 20 20 C 1.52955 * 109.82021 * 300.29807 * 19 18 17 21 21 C 1.52998 * 109.46196 * 64.46562 * 16 15 5 22 22 O 1.43703 * 109.40504 * 60.40236 * 19 18 17 23 23 C 1.44801 * 104.79051 * 95.49535 * 22 19 18 24 24 C 1.54919 * 101.72515 * 36.06680 * 23 22 19 25 25 O 1.43302 * 109.64635 * 179.72432 * 19 18 17 26 26 H 1.08996 * 109.46897 * 184.96272 * 1 2 3 27 27 H 1.08999 * 109.47005 * 304.96424 * 1 2 3 28 28 H 1.09001 * 109.46999 * 64.96091 * 1 2 3 29 29 H 1.08999 * 109.47154 * 240.00231 * 2 1 3 30 30 H 1.08998 * 109.47341 * 119.99997 * 2 1 3 31 31 H 1.08993 * 109.47032 * 64.91672 * 3 2 1 32 32 H 1.09004 * 109.46712 * 304.91313 * 3 2 1 33 33 H 1.08999 * 109.47482 * 54.83649 * 4 3 2 34 34 H 1.09000 * 109.46805 * 294.83479 * 4 3 2 35 35 H 1.08994 * 109.46871 * 186.04542 * 6 5 4 36 36 H 1.08997 * 109.46980 * 306.04210 * 6 5 4 37 37 H 0.96994 * 119.99991 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46912 * 79.72857 * 15 5 4 39 39 H 1.08996 * 109.46796 * 319.73246 * 15 5 4 40 40 H 1.08993 * 109.45558 * 304.48967 * 16 15 5 41 41 H 1.09003 * 109.46923 * 299.83494 * 17 16 15 42 42 H 1.09000 * 109.47306 * 59.84166 * 17 16 15 43 43 H 1.08993 * 109.47830 * 179.78235 * 18 17 16 44 44 H 1.09004 * 109.47191 * 299.80405 * 18 17 16 45 45 H 1.09002 * 109.47928 * 299.70495 * 20 19 18 46 46 H 1.09002 * 109.48035 * 179.68124 * 20 19 18 47 47 H 1.08997 * 109.47152 * 300.15332 * 21 16 15 48 48 H 1.08995 * 109.46793 * 60.14885 * 21 16 15 49 49 H 1.09004 * 110.97735 * 277.95807 * 23 22 19 50 50 H 1.08991 * 111.01036 * 154.18744 * 23 22 19 51 51 H 1.09006 * 110.69619 * 206.08300 * 24 23 22 52 52 H 1.08991 * 110.69573 * 82.87644 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5650 1.4443 -0.1236 5 7 4.0446 2.8273 -0.2479 6 6 5.3954 2.8662 -0.8240 7 6 5.3488 2.3735 -2.2475 8 1 4.4096 2.0629 -2.6809 9 6 6.5050 2.3203 -2.9967 10 7 6.4645 1.8899 -4.2388 11 14 8.1293 2.8582 -2.2472 12 1 8.7876 1.6930 -1.6038 13 1 9.0112 3.3989 -3.3126 14 1 7.8803 3.9105 -1.2293 15 6 4.0051 3.5167 1.0486 16 6 4.0262 5.0298 0.8225 17 6 4.0986 5.7460 2.1726 18 6 4.1236 7.2592 1.9462 19 6 2.8544 7.6839 1.2056 20 6 2.7757 6.9657 -0.1425 21 6 2.7531 5.4530 0.0870 22 8 1.7037 7.3434 1.9962 23 6 1.3838 8.5537 2.7238 24 6 1.7234 9.6474 1.6805 25 8 2.8700 9.1016 0.9968 26 1 -0.3633 -1.0238 0.0889 27 1 -0.3633 0.5889 0.8422 28 1 -0.3633 0.4350 -0.9311 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7504 1.9303 0.9307 32 1 1.6065 1.9811 -0.8428 33 1 3.8586 0.8771 -1.0069 34 1 4.0020 0.9866 0.7639 35 1 5.7686 3.8901 -0.8060 36 1 6.0580 2.2276 -0.2400 37 1 7.2779 1.8520 -4.7657 38 1 4.8724 3.2258 1.6413 39 1 3.0937 3.2411 1.5790 40 1 4.8970 5.2952 0.2233 41 1 3.2264 5.4825 2.7709 42 1 5.0045 5.4420 2.6971 43 1 4.1713 7.7698 2.9080 44 1 4.9976 7.5231 1.3507 45 1 3.6446 7.2288 -0.7458 46 1 1.8668 7.2680 -0.6629 47 1 2.7010 4.9405 -0.8735 48 1 1.8822 5.1895 0.6871 49 1 2.0096 8.6528 3.6108 50 1 0.3270 8.5824 2.9891 51 1 1.9797 10.5847 2.1744 52 1 0.8940 9.7899 0.9879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209101716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:58 Heat of formation + Delta-G solvation = -131.519879 kcal Electronic energy + Delta-G solvation = -27800.567743 eV Core-core repulsion = 24184.236598 eV Total energy + Delta-G solvation = -3616.331145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81797 -39.52034 -37.54999 -35.92848 -35.55582 -34.49846 -32.22771 -31.76713 -30.51921 -29.75401 -28.16701 -25.50652 -24.32615 -24.20690 -23.68006 -22.51554 -21.88658 -21.09154 -20.48803 -18.98508 -18.05869 -17.73114 -16.70547 -16.55513 -16.42148 -16.22459 -15.84145 -15.58680 -15.38842 -14.93747 -14.64317 -14.54456 -14.39413 -14.14002 -13.85681 -13.83877 -13.76699 -13.49188 -13.41810 -13.19592 -13.03581 -12.78926 -12.66246 -12.45472 -12.30348 -12.09288 -12.02502 -11.88643 -11.80774 -11.66929 -11.52587 -11.50728 -11.33606 -11.12640 -11.07679 -11.01794 -10.75733 -10.32547 -8.92236 -8.26627 -6.28132 1.32382 1.34512 1.45033 2.34387 2.48925 2.97974 3.06084 3.20933 3.66948 3.73260 3.78316 3.88698 4.06481 4.08319 4.16518 4.21843 4.29677 4.33919 4.35976 4.46780 4.51857 4.53569 4.54465 4.56298 4.65084 4.70544 4.75574 4.81984 4.86074 4.89803 4.95960 4.96979 5.01761 5.03822 5.06601 5.07437 5.11912 5.13212 5.22746 5.22953 5.32100 5.35018 5.50562 5.55752 5.56995 5.58641 5.63624 6.06885 6.20150 6.47771 6.73356 6.78723 7.35035 8.90137 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.004445 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.820156 B = 6297.872431 C = 8264.340826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.099 4.099 4 C 0.062 3.938 5 N -0.535 5.535 6 C 0.174 3.826 7 C -0.508 4.508 8 H 0.038 0.962 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.251 1.251 15 C 0.061 3.939 16 C -0.080 4.080 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.263 3.737 20 C -0.120 4.120 21 C -0.085 4.085 22 O -0.379 6.379 23 C 0.010 3.990 24 C 0.013 3.987 25 O -0.402 6.402 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.028 0.972 36 H -0.021 1.021 37 H 0.265 0.735 38 H 0.026 0.974 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.130 0.870 51 H 0.121 0.879 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 11.564 18.739 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.137 4.137 4 C -0.066 4.066 5 N -0.258 5.258 6 C 0.046 3.954 7 C -0.546 4.546 8 H 0.057 0.943 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.764 3.236 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.175 1.175 15 C -0.067 4.067 16 C -0.099 4.099 17 C -0.136 4.136 18 C -0.168 4.168 19 C 0.187 3.813 20 C -0.158 4.158 21 C -0.123 4.123 22 O -0.300 6.300 23 C -0.066 4.066 24 C -0.063 4.063 25 O -0.324 6.324 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.046 0.954 36 H -0.004 1.004 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.148 0.852 51 H 0.139 0.861 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.369 11.680 18.158 24.400 hybrid contribution 1.540 -0.338 -0.071 1.578 sum -9.829 11.342 18.087 23.503 Atomic orbital electron populations 1.21714 0.94514 1.02108 1.01854 1.21485 0.96893 0.96037 1.01625 1.21480 0.93556 0.96995 1.01631 1.22022 0.96044 0.89237 0.99256 1.61832 1.24673 1.15675 1.23631 1.19924 0.86724 0.95477 0.93233 1.21256 0.94576 1.41892 0.96894 0.94342 1.25774 1.02772 0.95136 0.95054 1.70047 1.29577 1.49240 1.10077 0.85811 0.79366 0.79637 0.78738 1.19399 1.20760 1.17464 1.22186 1.00519 0.94057 0.89889 1.21120 0.98086 0.94065 0.96635 1.21400 1.02834 0.93080 0.96243 1.22032 0.96649 0.97061 1.01070 1.23231 0.87126 0.80064 0.90903 1.21828 1.02493 0.96247 0.95217 1.21188 0.97355 0.93022 1.00704 1.89272 1.47165 1.34438 1.59147 1.24617 1.04487 0.82075 0.95425 1.24436 0.88615 0.98862 0.94381 1.88882 1.47660 1.20209 1.75664 0.91771 0.91952 0.93341 0.93448 0.91428 0.91306 0.93089 0.93149 0.95499 0.95362 1.00368 0.92576 0.95589 0.89906 0.93310 0.90549 0.90908 0.89940 0.91212 0.91484 0.91422 0.92568 0.91487 0.89588 0.85243 0.86103 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.12 -3.28 5.93 30.60 0.18 -3.10 16 3 C -0.10 -3.09 5.26 30.60 0.16 -2.92 16 4 C 0.06 2.41 4.79 86.30 0.41 2.82 16 5 N -0.53 -21.99 3.78 -900.79 -3.41 -25.39 16 6 C 0.17 8.46 3.62 85.56 0.31 8.77 16 7 C -0.51 -29.77 8.79 25.60 0.22 -29.54 16 8 H 0.04 2.52 7.56 -2.91 -0.02 2.50 16 9 C 0.01 0.57 5.47 84.66 0.46 1.04 16 10 N -0.95 -60.18 13.96 21.45 0.30 -59.89 16 11 Si 0.94 45.05 27.47 68.60 1.88 46.94 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 14 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 15 C 0.06 2.01 4.20 86.30 0.36 2.37 16 16 C -0.08 -2.47 2.24 -10.79 -0.02 -2.49 16 17 C -0.10 -2.36 5.06 30.60 0.15 -2.21 16 18 C -0.13 -3.04 5.29 30.59 0.16 -2.88 16 19 C 0.26 6.57 1.03 30.57 0.03 6.60 16 20 C -0.12 -3.48 5.34 30.59 0.16 -3.31 16 21 C -0.09 -2.65 4.95 30.60 0.15 -2.50 16 22 O -0.38 -8.67 9.67 -126.22 -1.22 -9.89 16 23 C 0.01 0.14 7.91 72.64 0.57 0.71 16 24 C 0.01 0.20 8.08 72.64 0.59 0.78 16 25 O -0.40 -9.82 10.87 -126.22 -1.37 -11.19 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.90 6.89 -2.39 -0.02 1.88 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.05 2.32 6.58 -2.39 -0.02 2.31 16 34 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 35 H 0.03 1.39 5.63 -2.39 -0.01 1.38 16 36 H -0.02 -1.04 7.55 -2.39 -0.02 -1.06 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.03 0.84 8.00 -2.39 -0.02 0.82 16 39 H 0.08 2.40 6.56 -2.39 -0.02 2.38 16 40 H 0.05 1.75 6.67 -2.39 -0.02 1.73 16 41 H 0.08 1.75 7.69 -2.39 -0.02 1.73 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.06 2.09 7.73 -2.39 -0.02 2.07 16 48 H 0.07 1.99 7.69 -2.39 -0.02 1.97 16 49 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 52 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.01 391.34 1.61 -67.40 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.79 Total: 20.35 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.63 Total: -28.33 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.11 Total: -85.28 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -2.59 Total: -21.08 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -69.01 1.61 -67.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209101716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.116 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds