Wall clock time and date at job start Fri Apr 10 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 C 1.52999 * 109.47434 * 120.00250 * 2 1 3 5 5 N 1.46498 * 109.47563 * 174.61119 * 4 2 1 6 6 C 1.46501 * 120.00311 * 274.22572 * 5 4 2 7 7 C 1.50696 * 109.47161 * 269.99817 * 6 5 4 8 8 H 1.07999 * 120.00244 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00267 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47070 * 60.00217 * 11 9 7 13 13 H 1.48498 * 109.47141 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46722 * 300.00089 * 11 9 7 15 15 C 1.34786 * 119.99846 * 94.22484 * 5 4 2 16 16 O 1.21276 * 120.00145 * 5.00550 * 15 5 4 17 17 C 1.50699 * 119.99647 * 185.00630 * 15 5 4 18 18 H 1.09000 * 109.47105 * 43.21277 * 17 15 5 19 19 C 1.53003 * 109.47355 * 283.21228 * 17 15 5 20 20 O 1.42901 * 109.46917 * 163.21523 * 17 15 5 21 21 C 1.42905 * 113.99934 * 217.99780 * 20 17 15 22 22 C 1.53002 * 109.46984 * 144.14173 * 21 20 17 23 23 C 1.52997 * 109.46995 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46899 * 299.99868 * 23 22 21 25 25 C 1.53002 * 109.47189 * 60.00251 * 24 23 22 26 26 C 1.52997 * 109.46995 * 299.99691 * 25 24 23 27 27 H 1.09002 * 109.46854 * 299.99811 * 1 2 3 28 28 H 1.09003 * 109.47404 * 59.99783 * 1 2 3 29 29 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47447 * 239.99745 * 2 1 3 31 31 H 1.08999 * 109.46991 * 65.67225 * 3 2 1 32 32 H 1.09000 * 109.47284 * 185.67334 * 3 2 1 33 33 H 1.09003 * 109.47272 * 305.67205 * 3 2 1 34 34 H 1.09002 * 109.47281 * 54.60821 * 4 2 1 35 35 H 1.08997 * 109.46957 * 294.61252 * 4 2 1 36 36 H 1.09004 * 109.46762 * 29.99945 * 6 5 4 37 37 H 1.08997 * 109.47021 * 149.99459 * 6 5 4 38 38 H 0.97000 * 120.00143 * 179.97438 * 10 9 7 39 39 H 1.09006 * 109.46656 * 306.86567 * 19 17 15 40 40 H 1.08995 * 109.46773 * 66.86432 * 19 17 15 41 41 H 1.08999 * 109.47357 * 186.86735 * 19 17 15 42 42 H 1.08999 * 109.46751 * 24.14112 * 21 20 17 43 43 H 1.09001 * 109.47164 * 59.99621 * 22 21 20 44 44 H 1.08997 * 109.46996 * 299.99892 * 22 21 20 45 45 H 1.09002 * 109.47159 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47594 * 59.99737 * 23 22 21 47 47 H 1.09002 * 109.47100 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.47253 * 300.00051 * 24 23 22 49 49 H 1.08993 * 109.47404 * 59.99944 * 25 24 23 50 50 H 1.08997 * 109.46996 * 179.97438 * 25 24 23 51 51 H 1.09001 * 109.47594 * 300.00263 * 26 25 24 52 52 H 1.08992 * 109.47302 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4992 -0.8347 1.1861 6 6 4.1168 -1.9578 0.4766 7 6 4.3212 -3.1046 1.4327 8 1 4.0208 -3.0068 2.4655 9 6 4.8908 -4.2791 0.9888 10 7 5.2562 -4.3984 -0.2690 11 14 5.1436 -5.7008 2.1737 12 1 3.8317 -6.1246 2.7255 13 1 5.7697 -6.8392 1.4546 14 1 6.0310 -5.2686 3.2832 15 6 4.2737 0.0945 1.7809 16 8 3.7653 0.9732 2.4443 17 6 5.7713 0.0413 1.6213 18 1 6.0184 -0.1772 0.5824 19 6 6.3416 -1.0555 2.5228 20 8 6.3346 1.3017 1.9901 21 6 7.4329 1.7093 1.1716 22 6 7.3939 3.2274 0.9849 23 6 8.5694 3.6636 0.1081 24 6 9.8839 3.2664 0.7828 25 6 9.9228 1.7483 0.9696 26 6 8.7473 1.3120 1.8464 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7620 1.9261 0.9364 32 1 3.1252 1.4441 -0.1016 33 1 1.5961 1.9848 -0.8349 34 1 1.6000 -1.7173 1.2988 35 1 1.7576 -0.1548 2.1365 36 1 3.4655 -2.2754 -0.3377 37 1 5.0795 -1.6464 0.0715 38 1 5.6573 -5.2245 -0.5812 39 1 5.9927 -0.9040 3.5444 40 1 6.0078 -2.0296 2.1655 41 1 7.4306 -1.0141 2.5009 42 1 7.3620 1.2216 0.1994 43 1 7.4647 3.7150 1.9571 44 1 6.4577 3.5103 0.5038 45 1 8.5419 4.7452 -0.0246 46 1 8.4982 3.1760 -0.8642 47 1 10.7213 3.5767 0.1580 48 1 9.9551 3.7540 1.7551 49 1 9.8516 1.2606 -0.0026 50 1 10.8594 1.4652 1.4499 51 1 8.8185 1.7997 2.8186 52 1 8.7748 0.2305 1.9791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251856511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:03 Heat of formation + Delta-G solvation = -119.891845 kcal Electronic energy + Delta-G solvation = -28177.086161 eV Core-core repulsion = 24561.259245 eV Total energy + Delta-G solvation = -3615.826916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.68585 -38.66865 -36.44903 -35.53693 -34.25136 -32.34883 -31.07667 -30.64066 -29.05782 -27.46461 -26.79078 -25.93915 -23.25500 -22.88627 -22.54477 -22.00287 -19.99040 -19.71578 -18.37003 -16.90838 -16.52838 -16.06961 -15.71347 -15.00359 -14.81681 -14.52628 -14.37435 -14.15215 -14.13734 -13.73299 -13.42772 -12.94288 -12.75195 -12.54286 -12.40786 -12.30784 -12.28194 -11.97873 -11.90290 -11.58680 -11.40447 -11.39470 -11.11644 -11.01140 -10.98385 -10.88131 -10.71707 -10.68319 -10.56849 -10.55356 -10.35237 -10.25489 -10.15337 -10.06644 -9.75332 -9.26092 -8.73209 -8.50978 -7.66314 -6.24608 -4.30315 3.20791 3.26166 3.28611 3.44341 3.55397 4.24553 4.37870 4.73372 4.76278 4.96466 5.07075 5.22130 5.24029 5.27589 5.31534 5.36528 5.38831 5.49348 5.50494 5.52804 5.59517 5.62501 5.78068 5.87644 5.91351 5.97000 5.99679 6.01127 6.05433 6.09859 6.17783 6.17839 6.22418 6.31203 6.35525 6.37848 6.38152 6.42102 6.50537 6.56288 6.64847 6.73685 6.81487 7.08587 7.20423 7.49229 7.67230 7.73507 8.00356 8.35436 8.75072 9.08303 9.35193 10.81145 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.005150 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.421681 B = 5435.123989 C = 7578.478346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.125 3.875 5 N -0.594 5.594 6 C 0.235 3.765 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.518 3.482 16 O -0.554 6.554 17 C 0.081 3.919 18 H 0.080 0.920 19 C -0.184 4.184 20 O -0.358 6.358 21 C 0.089 3.911 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 10.573 -1.533 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.326 5.326 6 C 0.115 3.885 7 C -0.574 4.574 8 H 0.082 0.918 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.720 3.280 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.306 3.694 16 O -0.433 6.433 17 C 0.021 3.979 18 H 0.098 0.902 19 C -0.241 4.241 20 O -0.276 6.276 21 C 0.031 3.969 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.558 11.000 -1.175 11.621 hybrid contribution 0.351 -1.206 0.305 1.293 sum 3.909 9.793 -0.869 10.581 Atomic orbital electron populations 1.21745 0.95243 1.01559 1.01341 1.21509 0.95297 0.96860 0.99562 1.21733 1.00842 0.95636 1.01022 1.21354 0.80799 1.00432 0.97301 1.48112 1.05508 1.25589 1.53412 1.19461 0.93858 0.82799 0.92360 1.21427 1.41162 0.98092 0.96674 0.91820 1.24940 0.95137 0.98374 0.95224 1.69910 1.40819 1.27345 1.14489 0.86620 0.78753 0.81580 0.81005 1.20044 1.21120 1.19889 1.20285 0.88568 0.81374 0.79200 1.90586 1.75287 1.36898 1.40514 1.22007 0.91393 0.84803 0.99737 0.90214 1.22646 1.00150 1.01484 0.99791 1.87985 1.47385 1.36631 1.55643 1.22199 0.86389 0.94988 0.93299 1.21614 0.98474 0.94697 1.00698 1.21510 0.94311 1.00718 0.98860 1.21570 0.97271 0.96210 1.00778 1.21510 0.98087 0.95774 1.00174 1.22108 0.94242 1.01805 0.99682 0.92839 0.92987 0.92643 0.91102 0.92428 0.93215 0.93850 0.90659 0.90782 0.94564 0.94623 0.92365 0.92837 0.85929 0.92824 0.92284 0.91230 0.91460 0.91734 0.91907 0.92161 0.91941 0.91901 0.91881 0.91304 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.15 0.34 -1.51 16 2 C -0.11 -1.81 3.12 -90.63 -0.28 -2.09 16 3 C -0.13 -2.20 8.09 37.16 0.30 -1.90 16 4 C 0.12 2.32 4.97 -4.04 -0.02 2.30 16 5 N -0.59 -12.44 2.29 -175.06 -0.40 -12.84 16 6 C 0.24 5.37 4.74 -5.20 -0.02 5.34 16 7 C -0.54 -13.19 6.52 -34.44 -0.22 -13.42 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -23.39 13.29 55.43 0.74 -22.65 16 11 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.52 11.22 5.59 -10.98 -0.06 11.16 16 16 O -0.55 -13.14 15.26 -13.77 -0.21 -13.35 16 17 C 0.08 1.60 2.37 -27.88 -0.07 1.53 16 18 H 0.08 1.53 5.71 -51.93 -0.30 1.24 16 19 C -0.18 -3.61 9.33 37.16 0.35 -3.26 16 20 O -0.36 -6.77 9.21 -54.56 -0.50 -7.27 16 21 C 0.09 1.33 2.64 -26.73 -0.07 1.26 16 22 C -0.12 -1.52 5.57 -26.73 -0.15 -1.67 16 23 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 24 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 26 C -0.14 -1.85 5.55 -26.73 -0.15 -2.00 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.05 0.90 6.94 -51.93 -0.36 0.54 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 35 H 0.07 1.42 7.24 -51.93 -0.38 1.05 16 36 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.04 0.84 5.92 -51.93 -0.31 0.53 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.12 2.69 4.43 -51.93 -0.23 2.46 16 41 H 0.05 0.93 6.26 -51.93 -0.33 0.61 16 42 H 0.06 0.88 7.21 -51.93 -0.37 0.50 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.07 0.97 6.29 -51.93 -0.33 0.64 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -27.55 394.31 -9.83 -37.38 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -9.74 Total: 4.71 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.63 Total: -6.76 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.33 Total: -35.49 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.71 Total: -20.63 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.55 -9.83 -37.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251856511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.514 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds