Wall clock time and date at job start Fri Apr 10 2020 22:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 C 1.52999 * 109.47434 * 120.00250 * 2 1 3 5 5 N 1.46498 * 109.47563 * 174.61119 * 4 2 1 6 6 C 1.46501 * 120.00311 * 274.22572 * 5 4 2 7 7 C 1.50696 * 109.47161 * 269.99817 * 6 5 4 8 8 H 1.07999 * 120.00244 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00267 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47070 * 60.00217 * 11 9 7 13 13 H 1.48498 * 109.47141 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46722 * 300.00089 * 11 9 7 15 15 C 1.34786 * 119.99846 * 94.22484 * 5 4 2 16 16 O 1.21276 * 120.00145 * 5.00550 * 15 5 4 17 17 C 1.50699 * 119.99647 * 185.00630 * 15 5 4 18 18 H 1.09000 * 109.47105 * 43.21277 * 17 15 5 19 19 C 1.53003 * 109.47355 * 283.21228 * 17 15 5 20 20 O 1.42901 * 109.46917 * 163.21523 * 17 15 5 21 21 C 1.42905 * 113.99934 * 217.99780 * 20 17 15 22 22 C 1.53002 * 109.46984 * 144.14173 * 21 20 17 23 23 C 1.52997 * 109.46995 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46899 * 299.99868 * 23 22 21 25 25 C 1.53002 * 109.47189 * 60.00251 * 24 23 22 26 26 C 1.52997 * 109.46995 * 299.99691 * 25 24 23 27 27 H 1.09002 * 109.46854 * 299.99811 * 1 2 3 28 28 H 1.09003 * 109.47404 * 59.99783 * 1 2 3 29 29 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47447 * 239.99745 * 2 1 3 31 31 H 1.08999 * 109.46991 * 65.67225 * 3 2 1 32 32 H 1.09000 * 109.47284 * 185.67334 * 3 2 1 33 33 H 1.09003 * 109.47272 * 305.67205 * 3 2 1 34 34 H 1.09002 * 109.47281 * 54.60821 * 4 2 1 35 35 H 1.08997 * 109.46957 * 294.61252 * 4 2 1 36 36 H 1.09004 * 109.46762 * 29.99945 * 6 5 4 37 37 H 1.08997 * 109.47021 * 149.99459 * 6 5 4 38 38 H 0.97000 * 120.00143 * 179.97438 * 10 9 7 39 39 H 1.09006 * 109.46656 * 306.86567 * 19 17 15 40 40 H 1.08995 * 109.46773 * 66.86432 * 19 17 15 41 41 H 1.08999 * 109.47357 * 186.86735 * 19 17 15 42 42 H 1.08999 * 109.46751 * 24.14112 * 21 20 17 43 43 H 1.09001 * 109.47164 * 59.99621 * 22 21 20 44 44 H 1.08997 * 109.46996 * 299.99892 * 22 21 20 45 45 H 1.09002 * 109.47159 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47594 * 59.99737 * 23 22 21 47 47 H 1.09002 * 109.47100 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.47253 * 300.00051 * 24 23 22 49 49 H 1.08993 * 109.47404 * 59.99944 * 25 24 23 50 50 H 1.08997 * 109.46996 * 179.97438 * 25 24 23 51 51 H 1.09001 * 109.47594 * 300.00263 * 26 25 24 52 52 H 1.08992 * 109.47302 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4992 -0.8347 1.1861 6 6 4.1168 -1.9578 0.4766 7 6 4.3212 -3.1046 1.4327 8 1 4.0208 -3.0068 2.4655 9 6 4.8908 -4.2791 0.9888 10 7 5.2562 -4.3984 -0.2690 11 14 5.1436 -5.7008 2.1737 12 1 3.8317 -6.1246 2.7255 13 1 5.7697 -6.8392 1.4546 14 1 6.0310 -5.2686 3.2832 15 6 4.2737 0.0945 1.7809 16 8 3.7653 0.9732 2.4443 17 6 5.7713 0.0413 1.6213 18 1 6.0184 -0.1772 0.5824 19 6 6.3416 -1.0555 2.5228 20 8 6.3346 1.3017 1.9901 21 6 7.4329 1.7093 1.1716 22 6 7.3939 3.2274 0.9849 23 6 8.5694 3.6636 0.1081 24 6 9.8839 3.2664 0.7828 25 6 9.9228 1.7483 0.9696 26 6 8.7473 1.3120 1.8464 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7620 1.9261 0.9364 32 1 3.1252 1.4441 -0.1016 33 1 1.5961 1.9848 -0.8349 34 1 1.6000 -1.7173 1.2988 35 1 1.7576 -0.1548 2.1365 36 1 3.4655 -2.2754 -0.3377 37 1 5.0795 -1.6464 0.0715 38 1 5.6573 -5.2245 -0.5812 39 1 5.9927 -0.9040 3.5444 40 1 6.0078 -2.0296 2.1655 41 1 7.4306 -1.0141 2.5009 42 1 7.3620 1.2216 0.1994 43 1 7.4647 3.7150 1.9571 44 1 6.4577 3.5103 0.5038 45 1 8.5419 4.7452 -0.0246 46 1 8.4982 3.1760 -0.8642 47 1 10.7213 3.5767 0.1580 48 1 9.9551 3.7540 1.7551 49 1 9.8516 1.2606 -0.0026 50 1 10.8594 1.4652 1.4499 51 1 8.8185 1.7997 2.8186 52 1 8.7748 0.2305 1.9791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251856511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:02 Heat of formation + Delta-G solvation = -131.478892 kcal Electronic energy + Delta-G solvation = -28177.588613 eV Core-core repulsion = 24561.259245 eV Total energy + Delta-G solvation = -3616.329368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.27948 -39.93583 -37.75714 -37.07456 -35.89874 -34.20402 -32.44651 -31.65483 -30.22712 -29.31053 -28.07558 -27.46505 -25.03330 -24.50132 -23.50789 -23.11100 -21.28338 -20.81071 -20.00800 -18.53498 -18.33365 -17.71319 -17.09834 -16.54029 -16.28712 -16.13548 -15.56863 -15.45542 -15.24867 -14.88725 -14.80152 -14.36539 -14.27514 -13.99054 -13.84045 -13.71391 -13.55511 -13.35611 -13.12802 -13.05110 -12.92220 -12.78078 -12.68883 -12.54977 -12.35840 -12.27377 -12.07974 -12.01947 -11.92749 -11.85489 -11.63534 -11.57788 -11.50583 -11.39064 -11.28319 -10.67821 -10.55835 -10.20463 -9.41934 -8.19642 -6.30893 1.43421 1.45260 1.51623 1.71988 2.01121 2.41317 2.89764 3.10443 3.66516 3.76499 3.80785 3.92953 3.94394 4.04615 4.05969 4.18056 4.21503 4.24122 4.32692 4.36908 4.55951 4.56981 4.62092 4.66153 4.66697 4.77657 4.81673 4.86303 4.87673 4.91234 4.95451 4.99586 5.04843 5.07870 5.13577 5.18612 5.19302 5.21766 5.23755 5.32262 5.39114 5.39551 5.44603 5.49608 5.52348 5.66789 5.84964 6.06316 6.25222 6.55814 6.81283 7.30392 7.41466 8.85300 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.005150 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.421681 B = 5435.123989 C = 7578.478346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.251 3.749 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.030 3.970 10 N -0.914 5.914 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.513 3.487 16 O -0.578 6.578 17 C 0.088 3.912 18 H 0.081 0.919 19 C -0.174 4.174 20 O -0.377 6.377 21 C 0.079 3.921 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.137 4.137 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.269 0.731 39 H 0.044 0.956 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.065 0.935 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 11.089 -1.923 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.184 4.184 4 C -0.003 4.003 5 N -0.325 5.325 6 C 0.130 3.870 7 C -0.575 4.575 8 H 0.071 0.929 9 C -0.171 4.171 10 N -0.553 5.553 11 Si 0.772 3.228 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.302 3.698 16 O -0.459 6.459 17 C 0.027 3.973 18 H 0.099 0.901 19 C -0.231 4.231 20 O -0.296 6.296 21 C 0.022 3.978 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.084 0.916 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.200 11.518 -1.569 12.360 hybrid contribution 0.137 -1.323 0.429 1.398 sum 4.337 10.195 -1.139 11.137 Atomic orbital electron populations 1.21700 0.92501 1.02418 1.02586 1.21460 0.97514 0.96116 0.97590 1.21653 0.99292 0.96018 1.01476 1.21531 0.79537 1.00695 0.98516 1.48133 1.06557 1.24922 1.52842 1.19156 0.93237 0.82856 0.91743 1.21494 1.40951 0.98749 0.96311 0.92857 1.25517 0.94890 1.00285 0.96397 1.69987 1.41567 1.27984 1.15749 0.85780 0.78590 0.79100 0.79331 1.19957 1.20703 1.19544 1.20657 0.89485 0.80985 0.78717 1.90559 1.75910 1.37793 1.41659 1.21860 0.90224 0.85486 0.99692 0.90117 1.22502 1.01419 1.00195 0.98991 1.87965 1.48818 1.35983 1.56813 1.22516 0.86054 0.96308 0.92903 1.21623 0.99427 0.93115 1.01050 1.21511 0.93339 1.01791 0.98272 1.21573 0.97465 0.95211 1.01302 1.21516 0.97329 0.96717 0.99688 1.22066 0.94321 1.01097 1.00003 0.92312 0.91019 0.92024 0.91814 0.93554 0.95735 0.91225 0.90715 0.91533 0.95802 0.95377 0.92232 0.93710 0.88011 0.90784 0.92484 0.91643 0.92615 0.90007 0.91636 0.90070 0.91693 0.91817 0.90469 0.91587 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.19 71.98 0.66 -2.63 16 2 C -0.11 -3.40 3.12 -10.80 -0.03 -3.43 16 3 C -0.13 -4.10 8.09 71.98 0.58 -3.52 16 4 C 0.12 4.53 4.97 86.38 0.43 4.96 16 5 N -0.59 -25.44 2.29 -826.16 -1.89 -27.34 16 6 C 0.25 11.70 4.74 85.63 0.41 12.10 16 7 C -0.54 -26.76 6.52 25.60 0.17 -26.59 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.03 1.53 5.46 84.65 0.46 1.99 16 10 N -0.91 -48.23 13.29 21.45 0.28 -47.94 16 11 Si 0.95 40.48 29.54 68.60 2.03 42.50 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 C 0.51 22.82 5.59 87.66 0.49 23.31 16 16 O -0.58 -28.15 15.26 15.46 0.24 -27.92 16 17 C 0.09 3.55 2.37 29.85 0.07 3.62 16 18 H 0.08 3.20 5.71 -2.39 -0.01 3.18 16 19 C -0.17 -6.93 9.33 71.98 0.67 -6.26 16 20 O -0.38 -14.51 9.21 -130.50 -1.20 -15.71 16 21 C 0.08 2.37 2.64 30.60 0.08 2.45 16 22 C -0.11 -2.91 5.57 30.59 0.17 -2.74 16 23 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 24 C -0.12 -1.97 5.92 30.60 0.18 -1.79 16 25 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 26 C -0.14 -3.51 5.55 30.59 0.17 -3.34 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.05 1.58 8.04 -2.39 -0.02 1.56 16 32 H 0.02 0.88 6.94 -2.39 -0.02 0.87 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 35 H 0.07 2.61 7.24 -2.39 -0.02 2.59 16 36 H 0.02 1.17 8.07 -2.38 -0.02 1.15 16 37 H 0.03 1.36 5.92 -2.39 -0.01 1.35 16 38 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 39 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.10 4.53 4.43 -2.39 -0.01 4.52 16 41 H 0.07 2.58 6.26 -2.39 -0.01 2.57 16 42 H 0.06 1.70 7.21 -2.39 -0.02 1.69 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.06 1.60 6.29 -2.39 -0.02 1.59 16 Total: -1.00 -58.90 394.31 5.18 -53.71 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.86 Total: 28.50 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.87 Total: -5.81 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.61 Total: -75.28 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.97 Total: -43.63 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -58.90 5.18 -53.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251856511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.764 kcal (2) G-P(sol) polarization free energy of solvation -58.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds