Wall clock time and date at job start Fri Apr 10 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.53000 * 109.47235 * 119.99903 * 2 1 3 5 5 N 1.46501 * 109.47383 * 174.06400 * 4 2 1 6 6 C 1.46503 * 120.00090 * 275.60527 * 5 4 2 7 7 C 1.50698 * 109.46815 * 268.58891 * 6 5 4 8 8 H 1.08003 * 120.00545 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99512 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00035 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47355 * 89.99648 * 11 9 7 13 13 H 1.48495 * 109.47020 * 209.99495 * 11 9 7 14 14 H 1.48503 * 109.47107 * 329.99316 * 11 9 7 15 15 C 1.34772 * 119.99572 * 95.60159 * 5 4 2 16 16 O 1.21274 * 120.00226 * 4.07304 * 15 5 4 17 17 C 1.50705 * 119.99484 * 184.07010 * 15 5 4 18 18 H 1.08994 * 109.47157 * 310.24002 * 17 15 5 19 19 C 1.52998 * 109.46996 * 70.24627 * 17 15 5 20 20 O 1.42906 * 109.47002 * 190.24287 * 17 15 5 21 21 C 1.42890 * 114.00099 * 154.34784 * 20 17 15 22 22 C 1.52995 * 109.47291 * 145.99921 * 21 20 17 23 23 C 1.53001 * 109.47499 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.46978 * 300.00049 * 23 22 21 25 25 C 1.53003 * 109.47249 * 59.99816 * 24 23 22 26 26 C 1.52991 * 109.47150 * 299.99939 * 25 24 23 27 27 H 1.08996 * 109.47388 * 299.99930 * 1 2 3 28 28 H 1.09001 * 109.47030 * 60.00578 * 1 2 3 29 29 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47389 * 239.99624 * 2 1 3 31 31 H 1.08998 * 109.47167 * 185.38631 * 3 2 1 32 32 H 1.09001 * 109.46986 * 305.38502 * 3 2 1 33 33 H 1.08999 * 109.47140 * 65.38542 * 3 2 1 34 34 H 1.09001 * 109.46864 * 54.06776 * 4 2 1 35 35 H 1.08996 * 109.46953 * 294.07015 * 4 2 1 36 36 H 1.08997 * 109.46919 * 28.58759 * 6 5 4 37 37 H 1.08999 * 109.47073 * 148.58537 * 6 5 4 38 38 H 0.97005 * 119.99875 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.47384 * 66.25650 * 19 17 15 40 40 H 1.09005 * 109.46975 * 186.25894 * 19 17 15 41 41 H 1.09003 * 109.46834 * 306.25012 * 19 17 15 42 42 H 1.09004 * 109.47258 * 25.99983 * 21 20 17 43 43 H 1.09003 * 109.47279 * 60.00261 * 22 21 20 44 44 H 1.08999 * 109.47365 * 299.99611 * 22 21 20 45 45 H 1.08998 * 109.47399 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47169 * 59.99989 * 23 22 21 47 47 H 1.09004 * 109.47174 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.47273 * 299.99436 * 24 23 22 49 49 H 1.08994 * 109.47036 * 60.00157 * 25 24 23 50 50 H 1.09002 * 109.47163 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.47268 * 179.97438 * 26 25 24 52 52 H 1.09006 * 109.47396 * 300.00405 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4980 -0.8462 1.1800 6 6 4.1037 -1.9599 0.4457 7 6 4.3321 -3.1158 1.3852 8 1 4.0535 -3.0297 2.4252 9 6 4.8958 -4.2838 0.9169 10 7 5.0955 -5.2924 1.7370 11 14 5.3770 -4.4329 -0.8818 12 1 6.7793 -3.9774 -1.0585 13 1 5.2592 -5.8500 -1.3098 14 1 4.4749 -3.5900 -1.7071 15 6 4.2820 0.0635 1.7917 16 8 3.7822 0.9428 2.4608 17 6 5.7800 -0.0122 1.6444 18 1 6.1152 -1.0272 1.8575 19 6 6.1713 0.3644 0.2141 20 8 6.3952 0.8950 2.5612 21 6 7.7248 0.5298 2.9363 22 6 8.5594 1.7938 3.1514 23 6 9.9832 1.4028 3.5525 24 6 9.9432 0.5913 4.8489 25 6 9.1085 -0.6728 4.6338 26 6 7.6848 -0.2818 4.2328 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1257 1.4440 -0.0965 32 1 1.6000 1.9834 -0.8378 33 1 1.7576 1.9277 0.9343 34 1 1.5925 -1.7136 1.3039 35 1 1.7659 -0.1497 2.1360 36 1 3.4362 -2.2711 -0.3577 37 1 5.0567 -1.6411 0.0234 38 1 5.4924 -6.1139 1.4076 39 1 5.9364 1.4140 0.0375 40 1 7.2404 0.2031 0.0755 41 1 5.6162 -0.2557 -0.4898 42 1 8.1733 -0.0715 2.1454 43 1 8.1110 2.3951 3.9424 44 1 8.5884 2.3717 2.2277 45 1 10.5777 2.3034 3.7062 46 1 10.4315 0.8018 2.7613 47 1 10.9575 0.3123 5.1344 48 1 9.4950 1.1924 5.6401 49 1 9.5567 -1.2738 3.8427 50 1 9.0796 -1.2507 5.5576 51 1 7.0903 -1.1823 4.0791 52 1 7.2366 0.3194 5.0239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251856512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:06 Heat of formation + Delta-G solvation = -114.326613 kcal Electronic energy + Delta-G solvation = -28232.200408 eV Core-core repulsion = 24616.614818 eV Total energy + Delta-G solvation = -3615.585589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.77894 -38.69059 -36.50445 -35.63305 -34.27699 -32.38605 -31.19153 -30.69348 -29.09207 -28.11765 -26.85371 -25.98044 -23.74084 -22.56016 -22.38564 -21.71226 -20.01322 -19.74905 -18.43826 -17.08921 -16.91586 -16.15195 -15.69768 -15.09456 -14.85309 -14.49524 -14.34021 -14.18834 -14.10785 -13.74853 -13.58329 -13.17698 -12.87620 -12.70376 -12.59705 -12.33399 -12.15364 -12.13291 -12.03974 -11.98166 -11.57019 -11.47975 -11.39062 -11.05520 -11.03481 -10.96722 -10.76415 -10.65450 -10.57734 -10.49402 -10.41665 -10.28785 -10.21969 -10.10404 -9.62985 -9.19186 -8.83542 -8.73142 -7.70987 -6.25827 -4.27423 3.11883 3.20419 3.21938 3.33442 3.45858 4.21474 4.27382 4.78257 4.81569 5.01015 5.01922 5.12025 5.19698 5.25557 5.29213 5.32334 5.39069 5.42002 5.46800 5.55636 5.57061 5.65333 5.67326 5.78374 5.85176 5.90626 5.93962 5.96265 6.02708 6.06098 6.11174 6.12750 6.19213 6.21987 6.22718 6.28836 6.30768 6.31966 6.35214 6.46896 6.49550 6.52726 6.59098 6.66812 6.72384 7.31382 7.40640 7.59511 8.11999 8.38830 8.80100 8.97398 9.33439 10.86726 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.005268 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.701498 B = 5313.719236 C = 7114.585215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.198 3.802 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.889 5.889 11 Si 0.867 3.133 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.527 3.473 16 O -0.547 6.547 17 C 0.070 3.930 18 H 0.100 0.900 19 C -0.174 4.174 20 O -0.355 6.355 21 C 0.089 3.911 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 10.596 -1.827 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.001 3.999 5 N -0.320 5.320 6 C 0.077 3.923 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.526 5.526 11 Si 0.693 3.307 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.188 1.188 15 C 0.314 3.686 16 O -0.425 6.425 17 C 0.009 3.991 18 H 0.118 0.882 19 C -0.232 4.232 20 O -0.273 6.273 21 C 0.031 3.969 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.347 11.017 -1.391 11.925 hybrid contribution 0.461 -0.782 -1.075 1.407 sum 4.808 10.235 -2.466 11.574 Atomic orbital electron populations 1.21748 0.95085 1.01661 1.01458 1.21523 0.95472 0.96909 0.99377 1.21750 1.00911 0.95581 1.01155 1.21406 0.80317 1.00704 0.97521 1.47757 1.05599 1.26125 1.52496 1.20019 0.94030 0.85252 0.92966 1.21406 1.42205 0.96800 0.97639 0.90345 1.24873 0.94948 0.95453 0.97364 1.69892 1.43168 1.04444 1.35114 0.86990 0.79677 0.78171 0.85863 1.19792 1.20779 1.18758 1.20017 0.88209 0.81330 0.79053 1.90602 1.75658 1.36140 1.40144 1.21934 0.91763 0.95440 0.89985 0.88216 1.22382 1.02188 1.02665 0.95959 1.87996 1.27758 1.48389 1.63184 1.22120 0.83274 0.95610 0.95866 1.21582 0.94389 0.97058 1.02185 1.21504 0.96185 0.99874 0.97772 1.21577 0.99736 0.96894 0.97657 1.21491 0.95167 0.97213 1.01569 1.22036 0.96982 1.00835 0.98162 0.92693 0.92948 0.92583 0.91259 0.93103 0.93752 0.92348 0.90449 0.90362 0.94740 0.94634 0.92342 0.91746 0.91862 0.90260 0.92175 0.91173 0.91584 0.91762 0.91934 0.92161 0.91926 0.91890 0.91741 0.91030 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.11 -1.73 3.12 -90.62 -0.28 -2.01 16 3 C -0.14 -2.10 8.17 37.16 0.30 -1.80 16 4 C 0.12 2.25 4.95 -4.04 -0.02 2.23 16 5 N -0.59 -12.00 2.28 -175.06 -0.40 -12.40 16 6 C 0.20 4.29 3.70 -5.19 -0.02 4.27 16 7 C -0.54 -14.04 9.58 -34.44 -0.33 -14.37 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.40 13.96 55.43 0.77 -24.62 16 11 Si 0.87 19.31 27.47 -169.99 -4.67 14.64 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 15 C 0.53 11.14 5.71 -10.99 -0.06 11.08 16 16 O -0.55 -12.75 15.37 -14.13 -0.22 -12.97 16 17 C 0.07 1.33 2.12 -27.88 -0.06 1.27 16 18 H 0.10 2.04 7.02 -51.93 -0.36 1.67 16 19 C -0.17 -2.79 9.01 37.16 0.33 -2.45 16 20 O -0.36 -6.64 9.20 -54.93 -0.51 -7.14 16 21 C 0.09 1.36 2.39 -26.73 -0.06 1.30 16 22 C -0.11 -1.44 5.57 -26.73 -0.15 -1.59 16 23 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 24 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 25 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 26 C -0.14 -2.16 5.57 -26.73 -0.15 -2.31 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 31 H 0.05 0.86 7.01 -51.93 -0.36 0.49 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.08 1.48 7.21 -51.93 -0.37 1.11 16 36 H 0.03 0.74 7.11 -51.93 -0.37 0.37 16 37 H 0.04 0.74 3.78 -51.93 -0.20 0.54 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.88 7.76 -51.93 -0.40 0.48 16 41 H 0.08 1.27 5.65 -51.93 -0.29 0.98 16 42 H 0.06 0.89 7.34 -51.93 -0.38 0.51 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -29.57 397.11 -9.70 -39.27 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -9.94 Total: 5.49 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.73 Total: -8.25 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.37 Total: -37.03 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.72 Total: -20.11 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.57 -9.70 -39.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251856512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.053 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds