Wall clock time and date at job start Fri Apr 10 2020 22:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.53000 * 109.47235 * 119.99903 * 2 1 3 5 5 N 1.46501 * 109.47383 * 174.06400 * 4 2 1 6 6 C 1.46503 * 120.00090 * 275.60527 * 5 4 2 7 7 C 1.50698 * 109.46815 * 268.58891 * 6 5 4 8 8 H 1.08003 * 120.00545 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99512 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00035 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47355 * 89.99648 * 11 9 7 13 13 H 1.48495 * 109.47020 * 209.99495 * 11 9 7 14 14 H 1.48503 * 109.47107 * 329.99316 * 11 9 7 15 15 C 1.34772 * 119.99572 * 95.60159 * 5 4 2 16 16 O 1.21274 * 120.00226 * 4.07304 * 15 5 4 17 17 C 1.50705 * 119.99484 * 184.07010 * 15 5 4 18 18 H 1.08994 * 109.47157 * 310.24002 * 17 15 5 19 19 C 1.52998 * 109.46996 * 70.24627 * 17 15 5 20 20 O 1.42906 * 109.47002 * 190.24287 * 17 15 5 21 21 C 1.42890 * 114.00099 * 154.34784 * 20 17 15 22 22 C 1.52995 * 109.47291 * 145.99921 * 21 20 17 23 23 C 1.53001 * 109.47499 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.46978 * 300.00049 * 23 22 21 25 25 C 1.53003 * 109.47249 * 59.99816 * 24 23 22 26 26 C 1.52991 * 109.47150 * 299.99939 * 25 24 23 27 27 H 1.08996 * 109.47388 * 299.99930 * 1 2 3 28 28 H 1.09001 * 109.47030 * 60.00578 * 1 2 3 29 29 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47389 * 239.99624 * 2 1 3 31 31 H 1.08998 * 109.47167 * 185.38631 * 3 2 1 32 32 H 1.09001 * 109.46986 * 305.38502 * 3 2 1 33 33 H 1.08999 * 109.47140 * 65.38542 * 3 2 1 34 34 H 1.09001 * 109.46864 * 54.06776 * 4 2 1 35 35 H 1.08996 * 109.46953 * 294.07015 * 4 2 1 36 36 H 1.08997 * 109.46919 * 28.58759 * 6 5 4 37 37 H 1.08999 * 109.47073 * 148.58537 * 6 5 4 38 38 H 0.97005 * 119.99875 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.47384 * 66.25650 * 19 17 15 40 40 H 1.09005 * 109.46975 * 186.25894 * 19 17 15 41 41 H 1.09003 * 109.46834 * 306.25012 * 19 17 15 42 42 H 1.09004 * 109.47258 * 25.99983 * 21 20 17 43 43 H 1.09003 * 109.47279 * 60.00261 * 22 21 20 44 44 H 1.08999 * 109.47365 * 299.99611 * 22 21 20 45 45 H 1.08998 * 109.47399 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47169 * 59.99989 * 23 22 21 47 47 H 1.09004 * 109.47174 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.47273 * 299.99436 * 24 23 22 49 49 H 1.08994 * 109.47036 * 60.00157 * 25 24 23 50 50 H 1.09002 * 109.47163 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.47268 * 179.97438 * 26 25 24 52 52 H 1.09006 * 109.47396 * 300.00405 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4980 -0.8462 1.1800 6 6 4.1037 -1.9599 0.4457 7 6 4.3321 -3.1158 1.3852 8 1 4.0535 -3.0297 2.4252 9 6 4.8958 -4.2838 0.9169 10 7 5.0955 -5.2924 1.7370 11 14 5.3770 -4.4329 -0.8818 12 1 6.7793 -3.9774 -1.0585 13 1 5.2592 -5.8500 -1.3098 14 1 4.4749 -3.5900 -1.7071 15 6 4.2820 0.0635 1.7917 16 8 3.7822 0.9428 2.4608 17 6 5.7800 -0.0122 1.6444 18 1 6.1152 -1.0272 1.8575 19 6 6.1713 0.3644 0.2141 20 8 6.3952 0.8950 2.5612 21 6 7.7248 0.5298 2.9363 22 6 8.5594 1.7938 3.1514 23 6 9.9832 1.4028 3.5525 24 6 9.9432 0.5913 4.8489 25 6 9.1085 -0.6728 4.6338 26 6 7.6848 -0.2818 4.2328 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1257 1.4440 -0.0965 32 1 1.6000 1.9834 -0.8378 33 1 1.7576 1.9277 0.9343 34 1 1.5925 -1.7136 1.3039 35 1 1.7659 -0.1497 2.1360 36 1 3.4362 -2.2711 -0.3577 37 1 5.0567 -1.6411 0.0234 38 1 5.4924 -6.1139 1.4076 39 1 5.9364 1.4140 0.0375 40 1 7.2404 0.2031 0.0755 41 1 5.6162 -0.2557 -0.4898 42 1 8.1733 -0.0715 2.1454 43 1 8.1110 2.3951 3.9424 44 1 8.5884 2.3717 2.2277 45 1 10.5777 2.3034 3.7062 46 1 10.4315 0.8018 2.7613 47 1 10.9575 0.3123 5.1344 48 1 9.4950 1.1924 5.6401 49 1 9.5567 -1.2738 3.8427 50 1 9.0796 -1.2507 5.5576 51 1 7.0903 -1.1823 4.0791 52 1 7.2366 0.3194 5.0239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251856512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:05 Heat of formation + Delta-G solvation = -129.037098 kcal Electronic energy + Delta-G solvation = -28232.838302 eV Core-core repulsion = 24616.614818 eV Total energy + Delta-G solvation = -3616.223484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34013 -39.96778 -37.79581 -37.14025 -35.85279 -34.33201 -32.51957 -31.72676 -30.26438 -29.96724 -28.02253 -27.42420 -25.28132 -24.18519 -23.49860 -22.90021 -21.32768 -20.83719 -20.00031 -19.08045 -18.42135 -17.74914 -17.09462 -16.53177 -16.30618 -16.13167 -15.62220 -15.46226 -15.27954 -14.92635 -14.85700 -14.62447 -14.41459 -14.20760 -13.90351 -13.76463 -13.53165 -13.40832 -13.17201 -13.14266 -12.98292 -12.85060 -12.77246 -12.60838 -12.44999 -12.26249 -12.08352 -11.89680 -11.89325 -11.82281 -11.65891 -11.56841 -11.50743 -11.48645 -11.24107 -10.80970 -10.60628 -10.33081 -9.41716 -8.31631 -6.39889 1.38299 1.40483 1.50068 1.66067 1.96111 2.32880 2.85711 3.01660 3.56208 3.76140 3.77859 3.91760 3.97540 4.03744 4.04707 4.14044 4.18997 4.22459 4.27783 4.33811 4.52837 4.53604 4.55448 4.59151 4.63616 4.67018 4.70616 4.73636 4.78890 4.83316 4.92697 4.95348 5.00492 5.02867 5.06285 5.10852 5.14754 5.19636 5.19734 5.22855 5.29807 5.37466 5.40324 5.43649 5.45495 5.49030 5.69251 6.15638 6.21286 6.57745 6.66554 7.21365 7.32693 8.84857 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.005268 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.701498 B = 5313.719236 C = 7114.585215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.208 3.792 7 C -0.545 4.545 8 H 0.023 0.977 9 C 0.021 3.979 10 N -0.942 5.942 11 Si 0.936 3.064 12 H -0.257 1.257 13 H -0.285 1.285 14 H -0.234 1.234 15 C 0.519 3.481 16 O -0.576 6.576 17 C 0.072 3.928 18 H 0.077 0.923 19 C -0.167 4.167 20 O -0.376 6.376 21 C 0.083 3.917 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.034 0.966 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 11.956 -4.704 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.187 4.187 4 C -0.005 4.005 5 N -0.320 5.320 6 C 0.086 3.914 7 C -0.583 4.583 8 H 0.041 0.959 9 C -0.178 4.178 10 N -0.581 5.581 11 Si 0.758 3.242 12 H -0.181 1.181 13 H -0.211 1.211 14 H -0.157 1.157 15 C 0.307 3.693 16 O -0.456 6.456 17 C 0.011 3.989 18 H 0.095 0.905 19 C -0.224 4.224 20 O -0.295 6.295 21 C 0.026 3.974 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.053 0.947 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.670 12.395 -4.269 14.283 hybrid contribution -0.016 -1.232 0.001 1.232 sum 5.654 11.163 -4.268 13.221 Atomic orbital electron populations 1.21719 0.92761 1.02381 1.02580 1.21468 0.97330 0.96314 0.97384 1.21683 0.99853 0.95775 1.01426 1.21575 0.79305 1.00638 0.98942 1.47833 1.06542 1.25515 1.52141 1.19890 0.95350 0.83957 0.92155 1.21509 1.42023 0.98826 0.95962 0.95873 1.25810 0.94603 0.94625 1.02811 1.70065 1.44710 1.05359 1.37935 0.85884 0.80572 0.78450 0.79333 1.18091 1.21078 1.15679 1.20518 0.89364 0.80980 0.78441 1.90572 1.76392 1.37370 1.41285 1.21881 0.90259 0.94507 0.92214 0.90473 1.22340 1.03697 1.03101 0.93244 1.87975 1.29585 1.48403 1.63490 1.22395 0.82163 0.97299 0.95588 1.21591 0.95238 0.95421 1.02436 1.21516 0.94645 1.00964 0.97687 1.21575 1.00354 0.95616 0.97968 1.21492 0.93394 0.98612 1.01647 1.22021 0.98545 0.99084 0.98344 0.92693 0.90709 0.92117 0.90754 0.94896 0.90978 0.93990 0.91058 0.91888 0.93222 0.92640 0.92228 0.90967 0.89491 0.89992 0.91593 0.91971 0.90713 0.89419 0.91160 0.89938 0.91925 0.91703 0.91522 0.94740 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 2 C -0.11 -3.07 3.12 -10.80 -0.03 -3.11 16 3 C -0.13 -3.83 8.17 71.98 0.59 -3.24 16 4 C 0.12 4.38 4.95 86.38 0.43 4.81 16 5 N -0.59 -24.53 2.28 -826.17 -1.89 -26.42 16 6 C 0.21 8.90 3.70 85.63 0.32 9.22 16 7 C -0.54 -29.22 9.58 25.60 0.25 -28.97 16 8 H 0.02 1.46 8.06 -2.91 -0.02 1.43 16 9 C 0.02 1.11 5.47 84.66 0.46 1.57 16 10 N -0.94 -55.72 13.96 21.45 0.30 -55.42 16 11 Si 0.94 38.73 27.47 68.60 1.88 40.61 16 12 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 13 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 15 C 0.52 22.63 5.71 87.66 0.50 23.14 16 16 O -0.58 -27.93 15.37 15.82 0.24 -27.68 16 17 C 0.07 2.81 2.12 29.85 0.06 2.87 16 18 H 0.08 3.30 7.02 -2.39 -0.02 3.29 16 19 C -0.17 -5.04 9.01 71.98 0.65 -4.39 16 20 O -0.38 -14.38 9.20 -130.15 -1.20 -15.58 16 21 C 0.08 2.54 2.39 30.60 0.07 2.61 16 22 C -0.11 -2.60 5.57 30.59 0.17 -2.43 16 23 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 24 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 25 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 26 C -0.14 -4.53 5.57 30.59 0.17 -4.36 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.03 1.07 7.01 -2.39 -0.02 1.05 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 35 H 0.06 2.51 7.21 -2.39 -0.02 2.49 16 36 H 0.05 2.01 7.11 -2.39 -0.02 1.99 16 37 H 0.06 2.19 3.78 -2.39 -0.01 2.18 16 38 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.20 7.76 -2.38 -0.02 2.18 16 41 H 0.08 2.42 5.65 -2.39 -0.01 2.40 16 42 H 0.07 1.92 7.34 -2.39 -0.02 1.90 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -68.03 397.11 4.98 -63.05 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.79 Total: 32.65 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.84 Total: -11.22 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.59 Total: -81.84 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.95 Total: -43.26 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.88 Total: 40.61 kcal Total: -68.03 4.98 -63.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251856512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.983 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds