Wall clock time and date at job start Fri Apr 10 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 H 1.08998 * 109.46909 * 305.65494 * 3 2 1 5 5 C 1.50701 * 109.47588 * 185.65383 * 3 2 1 6 6 H 1.07997 * 120.00419 * 240.00086 * 5 3 2 7 7 C 1.37883 * 119.99490 * 59.99871 * 5 3 2 8 8 N 1.31514 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47127 * 89.99642 * 9 7 5 11 11 H 1.48494 * 109.47138 * 210.00068 * 9 7 5 12 12 H 1.48504 * 109.46863 * 329.99825 * 9 7 5 13 13 N 1.46899 * 109.47222 * 65.65206 * 3 2 1 14 14 C 1.46902 * 111.00217 * 205.23396 * 13 3 2 15 15 C 1.53000 * 109.47343 * 185.52253 * 14 13 3 16 16 C 1.50701 * 110.01799 * 59.29847 * 15 14 13 17 17 O 1.20824 * 120.00171 * 120.69581 * 16 15 14 18 18 O 1.34226 * 120.00274 * 300.70810 * 16 15 14 19 19 C 1.45195 * 117.00547 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.46790 * 59.99359 * 19 18 16 21 21 C 1.52996 * 109.47627 * 179.97438 * 19 18 16 22 22 C 1.53007 * 109.47035 * 299.99940 * 19 18 16 23 23 C 1.54269 * 110.03166 * 297.91066 * 15 14 13 24 24 C 1.54959 * 104.16069 * 217.13370 * 23 15 14 25 25 C 1.54892 * 102.77660 * 37.88902 * 24 23 15 26 26 C 1.53874 * 110.03487 * 180.69381 * 15 14 13 27 27 H 1.09006 * 109.47285 * 295.50827 * 1 2 3 28 28 H 1.08996 * 109.46798 * 55.51295 * 1 2 3 29 29 H 1.09007 * 109.46933 * 175.51132 * 1 2 3 30 30 H 1.08997 * 109.47476 * 239.99945 * 2 1 3 31 31 H 1.09003 * 109.47520 * 119.99705 * 2 1 3 32 32 H 0.96999 * 119.99819 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00275 * 329.19383 * 13 3 2 34 34 H 1.08998 * 109.47240 * 305.52828 * 14 13 3 35 35 H 1.09002 * 109.46561 * 65.52370 * 14 13 3 36 36 H 1.09001 * 109.47161 * 60.00548 * 20 19 18 37 37 H 1.09000 * 109.46845 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47364 * 300.00075 * 20 19 18 39 39 H 1.08996 * 109.47472 * 59.99847 * 21 19 18 40 40 H 1.09000 * 109.47404 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.46898 * 299.99804 * 21 19 18 42 42 H 1.08998 * 109.46973 * 59.99668 * 22 19 18 43 43 H 1.09000 * 109.47204 * 179.97438 * 22 19 18 44 44 H 1.09001 * 109.46728 * 299.99858 * 22 19 18 45 45 H 1.09002 * 110.48368 * 335.78357 * 23 15 14 46 46 H 1.09001 * 110.48639 * 98.42553 * 23 15 14 47 47 H 1.08998 * 110.72605 * 279.57776 * 24 23 15 48 48 H 1.08996 * 110.76745 * 156.22189 * 24 23 15 49 49 H 1.09004 * 110.48759 * 203.40495 * 25 24 23 50 50 H 1.08997 * 110.48806 * 80.76244 * 25 24 23 51 51 H 1.08997 * 110.03189 * 238.57431 * 26 15 14 52 52 H 1.09001 * 110.02660 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5405 1.4449 -0.1400 6 1 4.1541 1.8865 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3826 0.3458 -2.1921 9 14 5.9898 0.8854 -1.4260 10 1 6.5454 -0.3489 -0.8152 11 1 6.3529 0.9323 -2.8651 12 1 6.5498 2.0748 -0.7352 13 7 1.6649 2.0945 1.2618 14 6 1.5789 3.5516 1.0962 15 6 1.3228 4.2052 2.4557 16 6 2.4388 3.8657 3.4098 17 8 3.0976 4.7479 3.9074 18 8 2.7012 2.5832 3.7066 19 6 3.7907 2.3304 4.6325 20 6 3.4906 3.0092 5.9706 21 6 3.9379 0.8228 4.8476 22 6 5.0912 2.8932 4.0556 23 6 -0.0265 3.7233 3.0278 24 6 -0.6104 4.9762 3.7282 25 6 -0.1995 6.1249 2.7737 26 6 1.2131 5.7315 2.2945 27 1 -0.3634 0.4426 0.9275 28 1 -0.3633 0.5819 -0.8470 29 1 -0.3633 -1.0246 -0.0804 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.7973 -0.0497 -2.9747 33 1 0.7991 1.7195 1.6192 34 1 2.5156 3.9263 0.6836 35 1 0.7608 3.7924 0.4174 36 1 2.5641 2.6083 6.3816 37 1 4.3087 2.8198 6.6655 38 1 3.3855 4.0833 5.8177 39 1 4.1514 0.3390 3.8946 40 1 4.7561 0.6331 5.5424 41 1 3.0113 0.4223 5.2589 42 1 4.9861 3.9673 3.9027 43 1 5.9091 2.7039 4.7509 44 1 5.3049 2.4097 3.1023 45 1 -0.6854 3.3935 2.2246 46 1 0.1297 2.9206 3.7485 47 1 -0.1617 5.1125 4.7121 48 1 -1.6955 4.9063 3.8036 49 1 -0.1702 7.0738 3.3093 50 1 -0.8863 6.1834 1.9294 51 1 1.9666 6.2267 2.9069 52 1 1.3428 6.0066 1.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:09 Heat of formation + Delta-G solvation = -108.832576 kcal Electronic energy + Delta-G solvation = -29124.939182 eV Core-core repulsion = 25509.591833 eV Total energy + Delta-G solvation = -3615.347350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70466 -38.35363 -36.33390 -35.78527 -33.62425 -32.52993 -31.34568 -29.07480 -28.64602 -27.14793 -27.03563 -26.34925 -23.66174 -23.17565 -22.27667 -20.80943 -19.88723 -19.41522 -18.39764 -16.57820 -16.26815 -16.14845 -15.74788 -15.01326 -14.91046 -14.65426 -14.33282 -13.88268 -13.80974 -13.44132 -13.15008 -13.08196 -12.58186 -12.51258 -12.25227 -12.16033 -11.92760 -11.60294 -11.58668 -11.52136 -11.40308 -11.20820 -11.10965 -11.05307 -10.99382 -10.92921 -10.83380 -10.62375 -10.58940 -10.46973 -10.35392 -9.93541 -9.86470 -9.64619 -9.49323 -9.39139 -9.01680 -8.30680 -7.11630 -5.93315 -3.96354 2.76816 3.19739 3.33356 3.40049 3.44167 4.46151 4.55677 4.68110 4.84512 5.02690 5.08860 5.16859 5.23007 5.29388 5.37521 5.48520 5.54062 5.65936 5.67882 5.68976 5.80283 5.82456 5.90786 5.92041 5.96962 6.02829 6.10149 6.14816 6.16743 6.17862 6.19013 6.20909 6.27373 6.31068 6.38872 6.44326 6.45272 6.52963 6.56817 6.66020 6.87102 7.10425 7.12282 7.22942 7.52628 7.82316 7.96552 8.33025 8.43647 8.44723 8.82634 9.12019 9.68305 11.11976 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.005862 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.890086 B = 4775.681912 C = 5822.005941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.672 5.672 14 C 0.082 3.918 15 C -0.055 4.055 16 C 0.495 3.505 17 O -0.527 6.527 18 O -0.302 6.302 19 C 0.117 3.883 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.181 4.181 23 C -0.109 4.109 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.318 0.682 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 5.848 12.495 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.304 5.304 14 C -0.048 4.048 15 C -0.056 4.056 16 C 0.339 3.661 17 O -0.418 6.418 18 O -0.217 6.217 19 C 0.080 3.920 20 C -0.237 4.237 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.147 4.147 24 C -0.164 4.164 25 C -0.158 4.158 26 C -0.157 4.157 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.176 5.977 12.709 14.968 hybrid contribution 0.387 -0.006 -0.700 0.800 sum -4.790 5.971 12.009 14.241 Atomic orbital electron populations 1.21877 0.99734 0.99590 0.99467 1.21738 0.91086 1.00384 1.02995 1.19116 0.95372 0.89938 0.84200 0.98347 1.21190 0.91326 1.36029 1.03863 0.92204 1.24934 0.97752 0.95870 0.95964 1.69869 1.34486 1.39790 1.09610 0.86632 0.86277 0.78353 0.76935 1.20814 1.21499 1.20082 1.60639 1.36309 1.00935 1.32490 1.21868 1.00891 0.91121 0.90949 1.21299 0.92519 0.96571 0.95241 1.23083 0.83281 0.80826 0.78894 1.90470 1.50002 1.49425 1.51876 1.86776 1.49316 1.27411 1.58205 1.22032 0.86015 0.96194 0.87747 1.22490 1.01714 1.03203 0.96336 1.21780 1.01836 0.92708 1.03145 1.22448 0.95845 1.03613 1.01886 1.22437 0.94057 0.97858 1.00349 1.22553 1.00270 0.94934 0.98676 1.22329 0.96422 0.98162 0.98901 1.22289 0.98171 0.92604 1.02631 0.94625 0.94001 0.94515 0.88402 0.94002 0.93203 0.86442 0.90505 0.95326 0.92531 0.91779 0.90122 0.90569 0.91386 0.92007 0.90261 0.92138 0.91183 0.90486 0.90541 0.91728 0.91430 0.91698 0.91591 0.89319 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.67 37.15 0.36 -2.44 16 2 C -0.12 -2.83 5.36 -26.73 -0.14 -2.97 16 3 C 0.22 5.29 2.02 -68.86 -0.14 5.15 16 4 H 0.00 -0.03 7.85 -51.93 -0.41 -0.44 16 5 C -0.49 -13.07 8.55 -34.44 -0.29 -13.37 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -13.45 4.79 -107.95 -0.52 -13.96 16 14 C 0.08 1.49 4.03 -3.82 -0.02 1.48 16 15 C -0.05 -0.84 0.70 -154.54 -0.11 -0.95 16 16 C 0.49 8.54 5.80 36.01 0.21 8.75 16 17 O -0.53 -9.56 10.71 -18.75 -0.20 -9.76 16 18 O -0.30 -5.30 8.30 -39.25 -0.33 -5.63 16 19 C 0.12 1.80 1.13 -90.62 -0.10 1.70 16 20 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 21 C -0.14 -1.89 8.85 37.16 0.33 -1.56 16 22 C -0.18 -2.92 8.37 37.16 0.31 -2.61 16 23 C -0.11 -1.42 4.98 -25.03 -0.12 -1.55 16 24 C -0.13 -1.40 6.91 -24.70 -0.17 -1.57 16 25 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 26 C -0.12 -1.63 6.05 -25.62 -0.16 -1.78 16 27 H 0.03 0.59 6.61 -51.93 -0.34 0.25 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.10 2.55 5.94 -51.93 -0.31 2.24 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.32 5.85 5.66 -39.29 -0.22 5.63 16 34 H 0.08 1.60 7.92 -51.93 -0.41 1.19 16 35 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.21 5.89 -51.93 -0.31 0.90 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.39 5.89 -51.93 -0.31 1.09 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 46 H 0.08 1.02 7.63 -51.93 -0.40 0.63 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.09 1.32 6.40 -51.93 -0.33 0.99 16 52 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -28.41 392.31 -9.25 -37.66 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -9.72 Total: 7.85 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 0.00 Total: -13.92 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.11 Total: -38.61 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.53 Total: -15.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.41 -9.25 -37.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.176 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds