Wall clock time and date at job start Fri Apr 10 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 H 1.08998 * 109.46909 * 305.65494 * 3 2 1 5 5 C 1.50701 * 109.47588 * 185.65383 * 3 2 1 6 6 H 1.07997 * 120.00419 * 240.00086 * 5 3 2 7 7 C 1.37883 * 119.99490 * 59.99871 * 5 3 2 8 8 N 1.31514 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47127 * 89.99642 * 9 7 5 11 11 H 1.48494 * 109.47138 * 210.00068 * 9 7 5 12 12 H 1.48504 * 109.46863 * 329.99825 * 9 7 5 13 13 N 1.46899 * 109.47222 * 65.65206 * 3 2 1 14 14 C 1.46902 * 111.00217 * 205.23396 * 13 3 2 15 15 C 1.53000 * 109.47343 * 185.52253 * 14 13 3 16 16 C 1.50701 * 110.01799 * 59.29847 * 15 14 13 17 17 O 1.20824 * 120.00171 * 120.69581 * 16 15 14 18 18 O 1.34226 * 120.00274 * 300.70810 * 16 15 14 19 19 C 1.45195 * 117.00547 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.46790 * 59.99359 * 19 18 16 21 21 C 1.52996 * 109.47627 * 179.97438 * 19 18 16 22 22 C 1.53007 * 109.47035 * 299.99940 * 19 18 16 23 23 C 1.54269 * 110.03166 * 297.91066 * 15 14 13 24 24 C 1.54959 * 104.16069 * 217.13370 * 23 15 14 25 25 C 1.54892 * 102.77660 * 37.88902 * 24 23 15 26 26 C 1.53874 * 110.03487 * 180.69381 * 15 14 13 27 27 H 1.09006 * 109.47285 * 295.50827 * 1 2 3 28 28 H 1.08996 * 109.46798 * 55.51295 * 1 2 3 29 29 H 1.09007 * 109.46933 * 175.51132 * 1 2 3 30 30 H 1.08997 * 109.47476 * 239.99945 * 2 1 3 31 31 H 1.09003 * 109.47520 * 119.99705 * 2 1 3 32 32 H 0.96999 * 119.99819 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00275 * 329.19383 * 13 3 2 34 34 H 1.08998 * 109.47240 * 305.52828 * 14 13 3 35 35 H 1.09002 * 109.46561 * 65.52370 * 14 13 3 36 36 H 1.09001 * 109.47161 * 60.00548 * 20 19 18 37 37 H 1.09000 * 109.46845 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47364 * 300.00075 * 20 19 18 39 39 H 1.08996 * 109.47472 * 59.99847 * 21 19 18 40 40 H 1.09000 * 109.47404 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.46898 * 299.99804 * 21 19 18 42 42 H 1.08998 * 109.46973 * 59.99668 * 22 19 18 43 43 H 1.09000 * 109.47204 * 179.97438 * 22 19 18 44 44 H 1.09001 * 109.46728 * 299.99858 * 22 19 18 45 45 H 1.09002 * 110.48368 * 335.78357 * 23 15 14 46 46 H 1.09001 * 110.48639 * 98.42553 * 23 15 14 47 47 H 1.08998 * 110.72605 * 279.57776 * 24 23 15 48 48 H 1.08996 * 110.76745 * 156.22189 * 24 23 15 49 49 H 1.09004 * 110.48759 * 203.40495 * 25 24 23 50 50 H 1.08997 * 110.48806 * 80.76244 * 25 24 23 51 51 H 1.08997 * 110.03189 * 238.57431 * 26 15 14 52 52 H 1.09001 * 110.02660 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5405 1.4449 -0.1400 6 1 4.1541 1.8865 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3826 0.3458 -2.1921 9 14 5.9898 0.8854 -1.4260 10 1 6.5454 -0.3489 -0.8152 11 1 6.3529 0.9323 -2.8651 12 1 6.5498 2.0748 -0.7352 13 7 1.6649 2.0945 1.2618 14 6 1.5789 3.5516 1.0962 15 6 1.3228 4.2052 2.4557 16 6 2.4388 3.8657 3.4098 17 8 3.0976 4.7479 3.9074 18 8 2.7012 2.5832 3.7066 19 6 3.7907 2.3304 4.6325 20 6 3.4906 3.0092 5.9706 21 6 3.9379 0.8228 4.8476 22 6 5.0912 2.8932 4.0556 23 6 -0.0265 3.7233 3.0278 24 6 -0.6104 4.9762 3.7282 25 6 -0.1995 6.1249 2.7737 26 6 1.2131 5.7315 2.2945 27 1 -0.3634 0.4426 0.9275 28 1 -0.3633 0.5819 -0.8470 29 1 -0.3633 -1.0246 -0.0804 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.7973 -0.0497 -2.9747 33 1 0.7991 1.7195 1.6192 34 1 2.5156 3.9263 0.6836 35 1 0.7608 3.7924 0.4174 36 1 2.5641 2.6083 6.3816 37 1 4.3087 2.8198 6.6655 38 1 3.3855 4.0833 5.8177 39 1 4.1514 0.3390 3.8946 40 1 4.7561 0.6331 5.5424 41 1 3.0113 0.4223 5.2589 42 1 4.9861 3.9673 3.9027 43 1 5.9091 2.7039 4.7509 44 1 5.3049 2.4097 3.1023 45 1 -0.6854 3.3935 2.2246 46 1 0.1297 2.9206 3.7485 47 1 -0.1617 5.1125 4.7121 48 1 -1.6955 4.9063 3.8036 49 1 -0.1702 7.0738 3.3093 50 1 -0.8863 6.1834 1.9294 51 1 1.9666 6.2267 2.9069 52 1 1.3428 6.0066 1.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:08 Heat of formation + Delta-G solvation = -122.618605 kcal Electronic energy + Delta-G solvation = -29125.536989 eV Core-core repulsion = 25509.591833 eV Total energy + Delta-G solvation = -3615.945157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00130 -39.57680 -37.90616 -37.23193 -34.91057 -34.34434 -33.04339 -30.45178 -29.70343 -28.31604 -28.24791 -28.19644 -25.33688 -24.41275 -23.92879 -21.88853 -21.35134 -20.92121 -19.69209 -18.34929 -17.79139 -17.50926 -16.99078 -16.75530 -16.30225 -16.00185 -15.73809 -15.50209 -15.08788 -14.75420 -14.57704 -14.27684 -14.11609 -13.99305 -13.79839 -13.29470 -13.25103 -13.12168 -13.00518 -12.84178 -12.79487 -12.72410 -12.54875 -12.51616 -12.37693 -12.15661 -12.03001 -11.99427 -11.91222 -11.86192 -11.69990 -11.49099 -11.42130 -11.18044 -11.14833 -10.99736 -10.66913 -10.39670 -8.85626 -8.04533 -6.14388 1.36756 1.38402 1.41898 1.47594 1.96376 2.42863 3.19855 3.36297 3.60848 3.68285 3.83423 3.90428 3.93988 4.06618 4.11145 4.37075 4.40288 4.50073 4.56426 4.59182 4.62280 4.63433 4.64910 4.73658 4.77820 4.80230 4.81969 4.87072 4.92678 4.93235 4.99508 5.00145 5.08034 5.15555 5.16211 5.22847 5.26982 5.30170 5.32171 5.33915 5.39340 5.43725 5.48019 5.64854 5.78173 5.82514 5.95825 6.41049 6.55676 6.99253 7.09104 7.10688 7.54023 8.98015 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.005862 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.890086 B = 4775.681912 C = 5822.005941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.229 3.771 4 H -0.032 1.032 5 C -0.498 4.498 6 H 0.041 0.959 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.088 3.912 15 C -0.052 4.052 16 C 0.488 3.512 17 O -0.540 6.540 18 O -0.318 6.318 19 C 0.104 3.896 20 C -0.170 4.170 21 C -0.132 4.132 22 C -0.176 4.176 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.120 4.120 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.259 0.741 33 H 0.331 0.669 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 5.914 14.324 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.121 3.879 4 H -0.015 1.015 5 C -0.537 4.537 6 H 0.059 0.941 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.300 5.300 14 C -0.042 4.042 15 C -0.054 4.054 16 C 0.333 3.667 17 O -0.432 6.432 18 O -0.233 6.233 19 C 0.068 3.932 20 C -0.227 4.227 21 C -0.189 4.189 22 C -0.233 4.233 23 C -0.144 4.144 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.158 4.158 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.111 0.889 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.092 0.908 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.528 6.043 14.551 17.054 hybrid contribution 0.867 -0.009 -1.264 1.533 sum -5.661 6.034 13.287 15.652 Atomic orbital electron populations 1.21738 0.96206 1.01047 1.00530 1.21542 0.94229 0.98853 1.01002 1.18864 0.93600 0.90706 0.84724 1.01474 1.21392 0.93049 1.35772 1.03462 0.94059 1.25545 1.01343 0.95764 0.95841 1.69982 1.35747 1.40261 1.09866 0.85799 0.82066 0.78232 0.76967 1.20112 1.20890 1.20456 1.60477 1.37222 1.01926 1.30345 1.21769 0.99403 0.89989 0.93049 1.21346 0.93519 0.97541 0.92994 1.23458 0.83506 0.80692 0.79037 1.90460 1.50453 1.49717 1.52564 1.86755 1.50052 1.27567 1.58920 1.22343 0.84933 0.97509 0.88395 1.22386 1.03253 1.01689 0.95350 1.21775 1.03533 0.91127 1.02449 1.22396 0.97698 1.02012 1.01198 1.22456 0.92504 0.98842 1.00624 1.22534 1.01664 0.93405 0.98060 1.22331 0.94457 0.98831 0.99525 1.22299 0.99920 0.91170 1.02386 0.92188 0.94477 0.92631 0.91677 0.94592 0.93207 0.85007 0.94095 0.94303 0.91357 0.89435 0.91913 0.93260 0.88590 0.90850 0.92099 0.89362 0.94239 0.89625 0.90815 0.92070 0.88883 0.90306 0.90227 0.90768 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.67 71.98 0.70 -4.27 16 2 C -0.12 -5.44 5.36 30.59 0.16 -5.27 16 3 C 0.23 11.29 2.02 44.17 0.09 11.38 16 4 H -0.03 -1.77 7.85 -2.39 -0.02 -1.79 16 5 C -0.50 -27.84 8.55 25.60 0.22 -27.62 16 6 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.91 11.29 21.45 0.24 -52.67 16 9 Si 0.94 45.20 29.54 68.60 2.03 47.23 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 13 N -0.67 -27.06 4.79 -495.45 -2.37 -29.43 16 14 C 0.09 3.28 4.03 86.30 0.35 3.62 16 15 C -0.05 -1.60 0.70 -52.20 -0.04 -1.63 16 16 C 0.49 17.02 5.80 71.24 0.41 17.43 16 17 O -0.54 -19.96 10.71 21.97 0.24 -19.72 16 18 O -0.32 -11.21 8.30 -51.37 -0.43 -11.63 16 19 C 0.10 3.16 1.13 -10.79 -0.01 3.15 16 20 C -0.17 -4.24 8.37 71.98 0.60 -3.63 16 21 C -0.13 -3.46 8.85 71.98 0.64 -2.83 16 22 C -0.18 -5.76 8.37 71.98 0.60 -5.16 16 23 C -0.11 -2.56 4.98 31.69 0.16 -2.40 16 24 C -0.12 -2.28 6.91 31.91 0.22 -2.06 16 25 C -0.11 -2.24 6.83 31.67 0.22 -2.03 16 26 C -0.12 -3.21 6.05 31.32 0.19 -3.02 16 27 H 0.06 1.86 6.61 -2.38 -0.02 1.84 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 3.46 5.94 -2.39 -0.01 3.45 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 33 H 0.33 11.88 5.66 -89.70 -0.51 11.37 16 34 H 0.04 1.79 7.92 -2.39 -0.02 1.78 16 35 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.82 5.89 -2.39 -0.01 1.80 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 2.20 5.89 -2.39 -0.01 2.19 16 43 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.91 7.75 -2.39 -0.02 1.90 16 46 H 0.07 1.82 7.63 -2.39 -0.02 1.80 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.07 2.22 6.40 -2.39 -0.02 2.20 16 52 H 0.07 1.90 7.67 -2.39 -0.02 1.88 16 Total: -1.00 -63.97 392.31 5.02 -58.94 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.36 Total: 30.46 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.96 Total: -23.18 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.13 Total: -82.10 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.19 Total: -31.36 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -63.97 5.02 -58.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.675 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds