Wall clock time and date at job start Fri Apr 10 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09000 * 109.47046 * 54.52473 * 3 2 1 5 5 C 1.50701 * 109.47232 * 174.52362 * 3 2 1 6 6 H 1.07998 * 119.99868 * 120.00055 * 5 3 2 7 7 C 1.37873 * 120.00121 * 299.99724 * 5 3 2 8 8 N 1.31515 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47178 * 60.00232 * 9 7 5 11 11 H 1.48503 * 109.47365 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47323 * 300.00163 * 9 7 5 13 13 N 1.46900 * 109.46843 * 294.52575 * 3 2 1 14 14 C 1.46901 * 110.99819 * 154.57133 * 13 3 2 15 15 C 1.53006 * 109.46829 * 186.01980 * 14 13 3 16 16 C 1.50693 * 110.01813 * 300.69934 * 15 14 13 17 17 O 1.20828 * 120.00115 * 239.02319 * 16 15 14 18 18 O 1.34231 * 120.00041 * 59.29924 * 16 15 14 19 19 C 1.45202 * 116.99858 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47185 * 60.00100 * 19 18 16 21 21 C 1.53004 * 109.46670 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47469 * 300.00089 * 19 18 16 23 23 C 1.54266 * 110.03296 * 62.09209 * 15 14 13 24 24 C 1.54967 * 104.15922 * 95.75236 * 23 15 14 25 25 C 1.54887 * 102.77792 * 37.88887 * 24 23 15 26 26 C 1.53873 * 110.02845 * 179.30678 * 15 14 13 27 27 H 1.09004 * 109.46993 * 55.94205 * 1 2 3 28 28 H 1.09004 * 109.46943 * 175.93263 * 1 2 3 29 29 H 1.08995 * 109.47725 * 295.93486 * 1 2 3 30 30 H 1.08996 * 109.47698 * 239.99524 * 2 1 3 31 31 H 1.09004 * 109.47257 * 119.99708 * 2 1 3 32 32 H 0.96997 * 120.00475 * 179.97438 * 8 7 5 33 33 H 1.00898 * 110.99645 * 278.51954 * 13 3 2 34 34 H 1.08996 * 109.47155 * 66.02260 * 14 13 3 35 35 H 1.08998 * 109.47319 * 306.01535 * 14 13 3 36 36 H 1.09010 * 109.46843 * 60.00098 * 20 19 18 37 37 H 1.09001 * 109.47016 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47293 * 300.00294 * 20 19 18 39 39 H 1.09001 * 109.47019 * 60.00326 * 21 19 18 40 40 H 1.09003 * 109.46599 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47384 * 300.00095 * 21 19 18 42 42 H 1.09003 * 109.47170 * 59.99943 * 22 19 18 43 43 H 1.09001 * 109.47189 * 180.02562 * 22 19 18 44 44 H 1.09001 * 109.47178 * 300.00261 * 22 19 18 45 45 H 1.08992 * 110.48672 * 214.39949 * 23 15 14 46 46 H 1.09001 * 110.48525 * 337.04229 * 23 15 14 47 47 H 1.09000 * 110.71716 * 279.57366 * 24 23 15 48 48 H 1.09004 * 110.76150 * 156.22406 * 24 23 15 49 49 H 1.08999 * 110.48562 * 203.40589 * 25 24 23 50 50 H 1.08999 * 110.48436 * 80.75881 * 25 24 23 51 51 H 1.08995 * 110.03537 * 359.95500 * 26 15 14 52 52 H 1.09005 * 110.02773 * 121.38407 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 0.8369 5 6 3.5409 1.4447 0.1356 6 1 4.1522 1.8871 -0.6370 7 6 4.1336 0.8819 1.2460 8 7 3.3892 0.3428 2.1866 9 14 5.9940 0.8840 1.4137 10 1 6.4894 2.2839 1.4133 11 1 6.3769 0.2244 2.6879 12 1 6.5946 0.1460 0.2736 13 7 1.6611 2.0957 -1.2600 14 6 1.5711 3.5523 -1.0916 15 6 1.0312 4.1819 -2.3773 16 6 1.9428 3.8580 -3.5326 17 8 2.4611 4.7499 -4.1618 18 8 2.1748 2.5786 -3.8663 19 6 3.0629 2.3412 -4.9902 20 6 4.4371 2.9434 -4.6904 21 6 3.2055 0.8349 -5.2181 22 6 2.4826 2.9948 -6.2459 23 6 -0.3917 3.6597 -2.6644 24 6 -1.3218 4.7449 -2.0654 25 6 -0.5744 6.0595 -2.4002 26 6 0.9152 5.7070 -2.2089 27 1 -0.3633 0.5755 -0.8514 28 1 -0.3633 -1.0251 -0.0729 29 1 -0.3634 0.4494 0.9241 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8061 -0.0535 2.9676 33 1 2.3049 1.8564 -1.9992 34 1 2.5610 3.9552 -0.8776 35 1 0.8989 3.7815 -0.2647 36 1 4.8505 2.4776 -3.7958 37 1 5.1039 2.7647 -5.5340 38 1 4.3359 4.0164 -4.5277 39 1 2.2266 0.4055 -5.4315 40 1 3.8726 0.6567 -6.0615 41 1 3.6191 0.3696 -4.3234 42 1 2.3814 4.0679 -6.0832 43 1 3.1492 2.8161 -7.0897 44 1 1.5036 2.5658 -6.4595 45 1 -0.5550 3.5680 -3.7381 46 1 -0.5536 2.7020 -2.1698 47 1 -1.4171 4.6185 -0.9869 48 1 -2.3000 4.7235 -2.5458 49 1 -0.8701 6.8521 -1.7128 50 1 -0.7670 6.3558 -3.4313 51 1 1.2428 5.9985 -1.2110 52 1 1.5184 6.2128 -2.9629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:13 Heat of formation + Delta-G solvation = -113.141183 kcal Electronic energy + Delta-G solvation = -29035.261791 eV Core-core repulsion = 25419.727606 eV Total energy + Delta-G solvation = -3615.534185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91482 -38.38773 -36.51197 -35.69504 -33.87595 -32.48948 -31.23858 -29.15340 -28.53149 -27.31210 -27.24096 -26.22850 -23.76253 -23.21780 -22.23272 -20.41564 -20.10346 -19.47448 -18.55938 -16.76348 -16.69869 -16.30229 -15.71794 -15.12927 -14.83002 -14.67926 -14.27731 -14.03377 -13.60377 -13.46615 -13.39992 -13.03064 -12.66671 -12.36626 -12.17030 -12.10759 -11.91974 -11.78981 -11.73676 -11.59715 -11.35075 -11.27862 -11.15355 -11.05663 -10.98748 -10.87355 -10.81565 -10.72966 -10.56315 -10.43883 -10.39489 -10.16139 -10.02947 -9.56223 -9.52882 -9.35485 -9.02840 -8.35500 -7.19213 -5.97927 -4.10796 2.54399 2.95127 3.27647 3.32982 3.35621 4.39898 4.56678 4.72634 4.82727 4.87565 4.91307 5.03945 5.19485 5.25763 5.37510 5.51648 5.56014 5.62225 5.62569 5.71032 5.76844 5.77892 5.87966 5.88214 5.93633 5.98356 6.03593 6.10330 6.13696 6.23470 6.25212 6.33807 6.39281 6.41539 6.44948 6.49388 6.52903 6.55340 6.63917 6.78032 6.85027 7.17940 7.22064 7.47933 7.62286 7.80109 8.10986 8.15145 8.23568 8.36556 8.75328 9.03770 9.56678 11.01648 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005702 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.603681 B = 4909.555984 C = 5979.326901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.081 3.919 15 C -0.053 4.053 16 C 0.482 3.518 17 O -0.517 6.517 18 O -0.327 6.327 19 C 0.114 3.886 20 C -0.184 4.184 21 C -0.141 4.141 22 C -0.180 4.180 23 C -0.100 4.100 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.338 0.662 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 5.890 -12.360 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.068 0.932 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.319 5.319 14 C -0.049 4.049 15 C -0.055 4.055 16 C 0.327 3.673 17 O -0.407 6.407 18 O -0.243 6.243 19 C 0.078 3.922 20 C -0.241 4.241 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.138 4.138 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.414 5.905 -12.302 15.079 hybrid contribution 2.317 0.230 0.135 2.333 sum -4.097 6.135 -12.167 14.229 Atomic orbital electron populations 1.21709 0.99049 0.98399 1.00312 1.21465 0.92068 0.99212 1.01521 1.19104 0.92649 0.91302 0.86078 0.95148 1.21823 0.92942 1.38278 1.05219 0.93216 1.24899 0.97639 0.95050 0.95766 1.69861 1.34733 1.38333 1.09343 0.86780 0.86404 0.78166 0.77367 1.20484 1.21209 1.20322 1.60925 1.55990 1.04622 1.10315 1.21788 0.98877 0.91198 0.93066 1.21370 0.94914 0.96612 0.92585 1.23627 0.79132 0.80610 0.83973 1.90483 1.49211 1.48318 1.52648 1.86671 1.61318 1.28516 1.47775 1.22132 0.89009 0.96567 0.84479 1.22487 0.95480 1.03523 1.02586 1.21834 1.02797 0.92353 1.02795 1.22466 1.01193 1.03289 0.96724 1.22335 0.90549 1.00419 1.00466 1.22538 0.97981 0.94414 1.01264 1.22342 0.94771 0.97721 1.01103 1.22286 0.97462 0.92629 1.03300 0.93068 0.95796 0.94628 0.95188 0.89313 0.92873 0.84105 0.95294 0.90501 0.91528 0.91558 0.90094 0.91512 0.90960 0.90836 0.90037 0.91532 0.92209 0.92404 0.88167 0.90990 0.91686 0.91645 0.91954 0.90787 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.85 37.16 0.37 -2.38 16 2 C -0.10 -2.44 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.20 1.97 -68.86 -0.14 5.07 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.54 -14.46 8.46 -34.44 -0.29 -14.76 16 6 H 0.05 1.34 7.73 -52.49 -0.41 0.93 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.88 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.83 4.63 -107.95 -0.50 -14.33 16 14 C 0.08 1.49 4.20 -3.82 -0.02 1.47 16 15 C -0.05 -0.82 0.70 -154.54 -0.11 -0.93 16 16 C 0.48 7.98 5.68 36.00 0.20 8.19 16 17 O -0.52 -8.94 10.71 -18.75 -0.20 -9.14 16 18 O -0.33 -5.35 7.20 -39.26 -0.28 -5.63 16 19 C 0.11 1.60 1.13 -90.62 -0.10 1.50 16 20 C -0.18 -2.63 8.37 37.16 0.31 -2.32 16 21 C -0.14 -1.72 8.85 37.16 0.33 -1.40 16 22 C -0.18 -2.23 8.37 37.15 0.31 -1.92 16 23 C -0.10 -1.39 5.78 -25.03 -0.14 -1.53 16 24 C -0.12 -1.45 6.91 -24.70 -0.17 -1.62 16 25 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 26 C -0.12 -1.63 6.05 -25.61 -0.16 -1.78 16 27 H 0.05 0.97 7.66 -51.93 -0.40 0.57 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.34 5.94 -51.93 -0.31 2.03 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.34 7.07 5.68 -39.29 -0.22 6.85 16 34 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 36 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.28 5.90 -51.93 -0.31 0.98 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.15 5.88 -51.93 -0.31 0.84 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 46 H 0.10 1.53 7.25 -51.93 -0.38 1.16 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 52 H 0.09 1.25 6.40 -51.93 -0.33 0.92 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -27.59 392.54 -9.22 -36.81 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -9.75 Total: 9.12 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.01 Total: -14.77 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.13 Total: -38.39 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.48 Total: -14.77 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.59 -9.22 -36.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.333 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds