Wall clock time and date at job start Fri Apr 10 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09000 * 109.47046 * 54.52473 * 3 2 1 5 5 C 1.50701 * 109.47232 * 174.52362 * 3 2 1 6 6 H 1.07998 * 119.99868 * 120.00055 * 5 3 2 7 7 C 1.37873 * 120.00121 * 299.99724 * 5 3 2 8 8 N 1.31515 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00096 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47178 * 60.00232 * 9 7 5 11 11 H 1.48503 * 109.47365 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47323 * 300.00163 * 9 7 5 13 13 N 1.46900 * 109.46843 * 294.52575 * 3 2 1 14 14 C 1.46901 * 110.99819 * 154.57133 * 13 3 2 15 15 C 1.53006 * 109.46829 * 186.01980 * 14 13 3 16 16 C 1.50693 * 110.01813 * 300.69934 * 15 14 13 17 17 O 1.20828 * 120.00115 * 239.02319 * 16 15 14 18 18 O 1.34231 * 120.00041 * 59.29924 * 16 15 14 19 19 C 1.45202 * 116.99858 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47185 * 60.00100 * 19 18 16 21 21 C 1.53004 * 109.46670 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47469 * 300.00089 * 19 18 16 23 23 C 1.54266 * 110.03296 * 62.09209 * 15 14 13 24 24 C 1.54967 * 104.15922 * 95.75236 * 23 15 14 25 25 C 1.54887 * 102.77792 * 37.88887 * 24 23 15 26 26 C 1.53873 * 110.02845 * 179.30678 * 15 14 13 27 27 H 1.09004 * 109.46993 * 55.94205 * 1 2 3 28 28 H 1.09004 * 109.46943 * 175.93263 * 1 2 3 29 29 H 1.08995 * 109.47725 * 295.93486 * 1 2 3 30 30 H 1.08996 * 109.47698 * 239.99524 * 2 1 3 31 31 H 1.09004 * 109.47257 * 119.99708 * 2 1 3 32 32 H 0.96997 * 120.00475 * 179.97438 * 8 7 5 33 33 H 1.00898 * 110.99645 * 278.51954 * 13 3 2 34 34 H 1.08996 * 109.47155 * 66.02260 * 14 13 3 35 35 H 1.08998 * 109.47319 * 306.01535 * 14 13 3 36 36 H 1.09010 * 109.46843 * 60.00098 * 20 19 18 37 37 H 1.09001 * 109.47016 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47293 * 300.00294 * 20 19 18 39 39 H 1.09001 * 109.47019 * 60.00326 * 21 19 18 40 40 H 1.09003 * 109.46599 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47384 * 300.00095 * 21 19 18 42 42 H 1.09003 * 109.47170 * 59.99943 * 22 19 18 43 43 H 1.09001 * 109.47189 * 180.02562 * 22 19 18 44 44 H 1.09001 * 109.47178 * 300.00261 * 22 19 18 45 45 H 1.08992 * 110.48672 * 214.39949 * 23 15 14 46 46 H 1.09001 * 110.48525 * 337.04229 * 23 15 14 47 47 H 1.09000 * 110.71716 * 279.57366 * 24 23 15 48 48 H 1.09004 * 110.76150 * 156.22406 * 24 23 15 49 49 H 1.08999 * 110.48562 * 203.40589 * 25 24 23 50 50 H 1.08999 * 110.48436 * 80.75881 * 25 24 23 51 51 H 1.08995 * 110.03537 * 359.95500 * 26 15 14 52 52 H 1.09005 * 110.02773 * 121.38407 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 0.8369 5 6 3.5409 1.4447 0.1356 6 1 4.1522 1.8871 -0.6370 7 6 4.1336 0.8819 1.2460 8 7 3.3892 0.3428 2.1866 9 14 5.9940 0.8840 1.4137 10 1 6.4894 2.2839 1.4133 11 1 6.3769 0.2244 2.6879 12 1 6.5946 0.1460 0.2736 13 7 1.6611 2.0957 -1.2600 14 6 1.5711 3.5523 -1.0916 15 6 1.0312 4.1819 -2.3773 16 6 1.9428 3.8580 -3.5326 17 8 2.4611 4.7499 -4.1618 18 8 2.1748 2.5786 -3.8663 19 6 3.0629 2.3412 -4.9902 20 6 4.4371 2.9434 -4.6904 21 6 3.2055 0.8349 -5.2181 22 6 2.4826 2.9948 -6.2459 23 6 -0.3917 3.6597 -2.6644 24 6 -1.3218 4.7449 -2.0654 25 6 -0.5744 6.0595 -2.4002 26 6 0.9152 5.7070 -2.2089 27 1 -0.3633 0.5755 -0.8514 28 1 -0.3633 -1.0251 -0.0729 29 1 -0.3634 0.4494 0.9241 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8061 -0.0535 2.9676 33 1 2.3049 1.8564 -1.9992 34 1 2.5610 3.9552 -0.8776 35 1 0.8989 3.7815 -0.2647 36 1 4.8505 2.4776 -3.7958 37 1 5.1039 2.7647 -5.5340 38 1 4.3359 4.0164 -4.5277 39 1 2.2266 0.4055 -5.4315 40 1 3.8726 0.6567 -6.0615 41 1 3.6191 0.3696 -4.3234 42 1 2.3814 4.0679 -6.0832 43 1 3.1492 2.8161 -7.0897 44 1 1.5036 2.5658 -6.4595 45 1 -0.5550 3.5680 -3.7381 46 1 -0.5536 2.7020 -2.1698 47 1 -1.4171 4.6185 -0.9869 48 1 -2.3000 4.7235 -2.5458 49 1 -0.8701 6.8521 -1.7128 50 1 -0.7670 6.3558 -3.4313 51 1 1.2428 5.9985 -1.2110 52 1 1.5184 6.2128 -2.9629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:12 Heat of formation + Delta-G solvation = -125.649644 kcal Electronic energy + Delta-G solvation = -29035.804199 eV Core-core repulsion = 25419.727606 eV Total energy + Delta-G solvation = -3616.076593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16970 -39.58075 -37.95569 -37.26124 -35.07330 -34.28787 -32.99049 -30.56085 -29.61228 -28.38028 -28.26846 -28.08811 -25.42220 -24.50629 -23.86513 -21.51999 -21.36606 -21.14010 -19.85736 -18.68808 -18.00063 -17.53263 -17.06596 -16.73698 -16.20323 -15.88987 -15.84173 -15.31674 -15.23658 -14.75661 -14.59628 -14.50064 -14.06671 -13.73369 -13.53954 -13.37641 -13.15164 -13.12262 -13.04660 -12.88470 -12.86045 -12.80431 -12.73359 -12.51493 -12.40110 -12.30133 -12.09410 -11.98179 -11.87383 -11.76500 -11.68675 -11.46010 -11.39637 -11.30621 -11.18906 -10.92662 -10.73841 -10.43869 -8.99860 -8.04443 -6.26361 1.24172 1.35261 1.36412 1.43419 1.77196 2.38469 3.13874 3.35468 3.60289 3.70616 3.75948 3.83026 3.94256 4.00221 4.14717 4.32568 4.49961 4.55627 4.56699 4.58951 4.61214 4.66974 4.76772 4.80776 4.82458 4.84277 4.84860 4.87896 4.91034 4.95924 4.99757 5.08361 5.12897 5.14478 5.23300 5.24301 5.25904 5.29504 5.32052 5.46007 5.51047 5.54375 5.55605 5.63405 5.68709 5.82549 6.14389 6.26460 6.39996 6.85447 6.88662 7.08386 7.44657 8.90828 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005702 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.603681 B = 4909.555984 C = 5979.326901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.558 4.558 6 H 0.039 0.961 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.940 3.060 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.087 3.913 15 C -0.051 4.051 16 C 0.478 3.522 17 O -0.527 6.527 18 O -0.341 6.341 19 C 0.103 3.897 20 C -0.180 4.180 21 C -0.136 4.136 22 C -0.171 4.171 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.119 4.119 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.335 0.665 34 H 0.001 0.999 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.760 6.094 -13.932 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 C 0.115 3.885 4 H 0.020 0.980 5 C -0.597 4.597 6 H 0.057 0.943 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.043 4.043 15 C -0.052 4.052 16 C 0.322 3.678 17 O -0.417 6.417 18 O -0.257 6.257 19 C 0.067 3.933 20 C -0.237 4.237 21 C -0.193 4.193 22 C -0.228 4.228 23 C -0.134 4.134 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.157 4.157 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.019 0.981 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.237 6.111 -13.883 16.806 hybrid contribution 2.620 0.169 0.602 2.693 sum -4.617 6.280 -13.282 15.400 Atomic orbital electron populations 1.21563 0.96178 0.99872 1.00584 1.21311 0.94594 0.98136 0.99729 1.18895 0.91148 0.91772 0.86669 0.97978 1.22093 0.94419 1.38139 1.05071 0.94283 1.25547 1.01448 0.94870 0.95598 1.69975 1.36128 1.38763 1.09625 0.85898 0.81880 0.78021 0.77549 1.20516 1.20534 1.19831 1.60879 1.55167 1.05695 1.08426 1.21750 0.97609 0.89929 0.95061 1.21389 0.95672 0.97691 0.90475 1.23816 0.79094 0.80663 0.84182 1.90478 1.49508 1.48584 1.53174 1.86647 1.61800 1.28366 1.48872 1.22467 0.88407 0.97904 0.84518 1.22450 0.96454 1.01997 1.02781 1.21850 1.03748 0.90753 1.02974 1.22388 1.02125 1.01804 0.96504 1.22301 0.89773 1.00440 1.00881 1.22532 0.98489 0.93386 1.01194 1.22327 0.92500 0.98121 1.02185 1.22298 0.99428 0.91080 1.02866 0.91917 0.93830 0.95018 0.95680 0.92253 0.92851 0.84394 0.98055 0.90403 0.93643 0.88818 0.91974 0.90846 0.88131 0.92798 0.91876 0.89093 0.91448 0.91745 0.89649 0.91208 0.89431 0.89823 0.91074 0.90964 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.85 71.98 0.71 -4.18 16 2 C -0.10 -4.71 5.45 30.59 0.17 -4.54 16 3 C 0.22 11.06 1.97 44.17 0.09 11.15 16 4 H 0.00 0.12 7.70 -2.39 -0.02 0.11 16 5 C -0.56 -30.56 8.46 25.60 0.22 -30.34 16 6 H 0.04 2.17 7.73 -2.91 -0.02 2.15 16 7 C 0.03 1.42 5.29 84.65 0.45 1.87 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.94 43.87 29.54 68.60 2.03 45.89 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 N -0.67 -27.61 4.63 -495.44 -2.29 -29.91 16 14 C 0.09 3.27 4.20 86.30 0.36 3.63 16 15 C -0.05 -1.56 0.70 -52.20 -0.04 -1.59 16 16 C 0.48 15.89 5.68 71.23 0.40 16.29 16 17 O -0.53 -18.34 10.71 21.96 0.24 -18.11 16 18 O -0.34 -11.16 7.20 -51.43 -0.37 -11.53 16 19 C 0.10 2.79 1.13 -10.80 -0.01 2.78 16 20 C -0.18 -5.10 8.37 71.98 0.60 -4.50 16 21 C -0.14 -3.14 8.85 71.98 0.64 -2.50 16 22 C -0.17 -3.94 8.37 71.98 0.60 -3.33 16 23 C -0.10 -2.54 5.78 31.70 0.18 -2.36 16 24 C -0.12 -2.48 6.91 31.91 0.22 -2.26 16 25 C -0.11 -2.33 6.83 31.67 0.22 -2.12 16 26 C -0.12 -3.18 6.05 31.32 0.19 -2.99 16 27 H 0.06 2.30 7.66 -2.38 -0.02 2.28 16 28 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 3.19 5.94 -2.39 -0.01 3.18 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.34 14.40 5.68 -89.70 -0.51 13.89 16 34 H 0.00 0.05 8.11 -2.39 -0.02 0.03 16 35 H 0.08 2.88 7.90 -2.39 -0.02 2.86 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.99 5.90 -2.39 -0.01 1.98 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.71 5.88 -2.39 -0.01 1.69 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.62 7.85 -2.39 -0.02 1.60 16 46 H 0.08 2.52 7.25 -2.39 -0.02 2.51 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 1.93 7.67 -2.39 -0.02 1.91 16 52 H 0.08 2.19 6.40 -2.38 -0.02 2.18 16 Total: -1.00 -60.52 392.54 5.20 -55.32 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.36 Total: 34.62 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 5.00 Total: -25.00 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.05 Total: -81.20 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.14 Total: -29.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -60.52 5.20 -55.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.328 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds