Wall clock time and date at job start Fri Apr 10 2020 22:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 H 1.09006 * 109.46838 * 304.99640 * 3 2 1 5 5 C 1.50700 * 109.47385 * 184.99909 * 3 2 1 6 6 H 1.08004 * 119.99890 * 240.00367 * 5 3 2 7 7 C 1.37882 * 119.99949 * 59.99564 * 5 3 2 8 8 N 1.31509 * 119.99769 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99871 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48499 * 109.47071 * 210.00189 * 9 7 5 12 12 H 1.48499 * 109.46927 * 330.00198 * 9 7 5 13 13 N 1.46902 * 109.47216 * 64.99408 * 3 2 1 14 14 C 1.46849 * 110.99662 * 65.82614 * 13 3 2 15 15 C 1.53030 * 109.60097 * 186.06948 * 14 13 3 16 16 C 1.53171 * 109.24373 * 300.56293 * 15 14 13 17 17 C 1.52839 * 109.14548 * 57.17790 * 16 15 14 18 18 C 1.53856 * 109.68682 * 182.20542 * 17 16 15 19 19 C 1.54877 * 104.09101 * 242.48971 * 18 17 16 20 20 H 1.08993 * 110.90512 * 262.65977 * 19 18 17 21 21 C 1.52998 * 110.90724 * 139.09258 * 19 18 17 22 22 C 1.52999 * 109.47073 * 175.00094 * 21 19 18 23 23 O 1.42906 * 109.46999 * 180.02562 * 22 21 19 24 24 C 1.42892 * 113.99963 * 180.02562 * 23 22 21 25 25 C 1.55015 * 102.09586 * 20.86064 * 19 18 17 26 26 O 1.43493 * 109.85497 * 64.16792 * 17 16 15 27 27 C 1.46900 * 111.00015 * 189.99876 * 13 3 2 28 28 H 1.08994 * 109.47443 * 300.00237 * 1 2 3 29 29 H 1.09004 * 109.46873 * 60.00504 * 1 2 3 30 30 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47292 * 240.00236 * 2 1 3 32 32 H 1.08995 * 109.46985 * 119.99507 * 2 1 3 33 33 H 0.97000 * 119.99750 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.45214 * 306.11156 * 14 13 3 35 35 H 1.09007 * 109.45175 * 66.02763 * 14 13 3 36 36 H 1.08998 * 109.50948 * 60.49000 * 15 14 13 37 37 H 1.09005 * 109.51120 * 180.58507 * 15 14 13 38 38 H 1.09003 * 109.52527 * 177.08127 * 16 15 14 39 39 H 1.09004 * 109.52639 * 297.21237 * 16 15 14 40 40 H 1.08999 * 110.51026 * 1.14584 * 18 17 16 41 41 H 1.09005 * 110.50774 * 123.83722 * 18 17 16 42 42 H 1.08999 * 109.46993 * 295.00427 * 21 19 18 43 43 H 1.09006 * 109.46944 * 54.99943 * 21 19 18 44 44 H 1.08999 * 109.47482 * 300.00033 * 22 21 19 45 45 H 1.09003 * 109.46779 * 60.00564 * 22 21 19 46 46 H 1.08996 * 109.47461 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47473 * 299.99919 * 24 23 22 48 48 H 1.08998 * 109.47452 * 59.99917 * 24 23 22 49 49 H 1.08995 * 110.60982 * 81.63709 * 25 19 18 50 50 H 1.09005 * 110.60715 * 204.45671 * 25 19 18 51 51 H 1.09002 * 109.46578 * 294.71091 * 27 13 3 52 52 H 1.08998 * 109.46162 * 54.69534 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6512 2.0994 1.2552 14 6 2.3297 1.4841 2.4031 15 6 1.7908 2.0879 3.7019 16 6 2.0379 3.5995 3.6965 17 6 1.3765 4.2112 2.4619 18 6 1.6638 5.7219 2.4147 19 6 0.2638 6.3756 2.5225 20 1 -0.1177 6.6423 1.5370 21 6 0.3018 7.5993 3.4401 22 6 -1.0631 8.2905 3.4251 23 8 -1.0274 9.4338 4.2816 24 6 -2.2597 10.1548 4.3403 25 6 -0.5786 5.2369 3.1524 26 8 -0.0466 4.0431 2.5376 27 6 1.9123 3.5438 1.1963 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.8293 -0.0604 -2.9501 34 1 2.1472 0.4095 2.3993 35 1 3.4015 1.6701 2.3337 36 1 0.7208 1.8943 3.7769 37 1 2.3027 1.6377 4.5525 38 1 1.6097 4.0419 4.5961 39 1 3.1102 3.7933 3.6702 40 1 2.2894 6.0182 3.2567 41 1 2.1392 5.9910 1.4715 42 1 0.5384 7.2842 4.4563 43 1 1.0647 8.2938 3.0881 44 1 -1.2997 8.6056 2.4088 45 1 -1.8259 7.5960 3.7771 46 1 -2.1503 11.0075 5.0103 47 1 -2.5218 10.5081 3.3430 48 1 -3.0471 9.4990 4.7118 49 1 -0.4375 5.2078 4.2328 50 1 -1.6337 5.3599 2.9076 51 1 2.9861 3.7161 1.1216 52 1 1.4149 3.9675 0.3239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:16 Heat of formation + Delta-G solvation = -103.770470 kcal Electronic energy + Delta-G solvation = -27868.664462 eV Core-core repulsion = 24253.536621 eV Total energy + Delta-G solvation = -3615.127840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.20718 -38.24470 -37.28979 -34.40624 -33.66865 -31.81270 -30.86853 -30.56412 -28.78996 -26.57001 -26.36542 -25.37974 -23.80357 -23.32119 -22.15754 -21.45629 -20.39910 -19.16223 -18.70967 -16.66811 -16.47155 -16.22829 -15.83404 -15.63011 -15.01420 -14.95621 -14.56146 -14.38897 -14.02307 -13.56558 -13.36991 -13.11833 -13.02220 -12.69530 -12.57594 -12.33176 -11.96842 -11.82764 -11.69066 -11.50525 -11.36544 -11.23632 -11.20883 -11.02118 -10.91165 -10.85285 -10.69648 -10.49279 -10.35911 -10.09651 -10.05863 -9.94157 -9.76862 -9.55103 -9.26338 -9.12934 -8.89533 -8.32259 -6.97434 -5.94536 -4.08862 3.27298 3.34783 3.36872 3.42756 4.13612 4.41173 4.52349 4.67042 4.88143 4.90848 4.96621 5.02209 5.10196 5.13614 5.15356 5.23618 5.29081 5.32125 5.38135 5.44841 5.54556 5.63957 5.68310 5.75080 5.82149 5.92258 6.01590 6.04039 6.13776 6.21125 6.32878 6.36933 6.40197 6.47876 6.55893 6.57965 6.68940 6.77740 6.86020 6.86311 6.99520 7.22435 7.28283 7.35436 7.47304 7.68181 7.82804 8.06971 8.22369 8.41016 8.57035 9.02829 9.58593 11.03540 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.003191 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.566153 B = 8772.973076 C = 9189.002963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.062 3.938 15 C -0.113 4.113 16 C -0.126 4.126 17 C 0.112 3.888 18 C -0.141 4.141 19 C -0.119 4.119 20 H 0.086 0.914 21 C -0.106 4.106 22 C 0.059 3.941 23 O -0.394 6.394 24 C 0.032 3.968 25 C 0.045 3.955 26 O -0.339 6.339 27 C 0.077 3.923 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.090 0.910 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.054 0.946 50 H 0.084 0.916 51 H 0.045 0.955 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 13.661 11.683 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.246 5.246 14 C -0.067 4.067 15 C -0.151 4.151 16 C -0.164 4.164 17 C 0.072 3.928 18 C -0.179 4.179 19 C -0.138 4.138 20 H 0.104 0.896 21 C -0.144 4.144 22 C -0.017 4.017 23 O -0.313 6.313 24 C -0.065 4.065 25 C -0.032 4.032 26 O -0.257 6.257 27 C -0.052 4.052 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.063 0.937 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.806 13.350 11.575 19.742 hybrid contribution 1.813 0.266 -0.354 1.866 sum -6.993 13.616 11.221 18.979 Atomic orbital electron populations 1.21698 0.98801 0.98220 1.00751 1.21578 0.92326 0.99137 1.01722 1.19268 0.92803 0.91270 0.85855 0.94556 1.21772 0.92999 1.38022 1.05343 0.92630 1.24908 0.97644 0.95136 0.95721 1.69880 1.34682 1.38359 1.09411 0.86713 0.86446 0.78339 0.77187 1.20733 1.21244 1.20131 1.62340 1.56870 1.00856 1.04584 1.21905 0.96206 0.98872 0.89705 1.21562 1.01833 0.94141 0.97574 1.21964 1.00001 0.97349 0.97102 1.22010 0.81945 0.92793 0.96088 1.23028 0.96655 0.94961 1.03254 1.22686 0.96647 0.94742 0.99740 0.89565 1.21475 0.96253 0.96138 1.00525 1.22623 0.98390 0.87197 0.93486 1.87865 1.34203 1.41726 1.67552 1.22729 0.86489 0.96241 1.01046 1.23598 0.98093 0.84759 0.96767 1.89072 1.19015 1.36985 1.80636 1.21921 0.98081 0.90692 0.94534 0.93062 0.94383 0.95825 0.89140 0.94984 0.92952 0.91279 0.94820 0.91299 0.92967 0.92691 0.91799 0.90651 0.90168 0.90893 0.90799 0.93184 0.93133 0.89725 0.94096 0.94063 0.92795 0.89779 0.93726 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.80 37.16 0.36 -2.55 16 2 C -0.11 -2.63 5.17 -26.73 -0.14 -2.77 16 3 C 0.21 5.30 1.70 -68.86 -0.12 5.18 16 4 H 0.04 1.01 8.00 -51.93 -0.42 0.59 16 5 C -0.54 -14.37 7.23 -34.44 -0.25 -14.62 16 6 H 0.06 1.48 5.84 -52.48 -0.31 1.17 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.52 -11.16 3.99 -228.19 -0.91 -12.07 16 14 C 0.06 1.23 4.77 -3.84 -0.02 1.21 16 15 C -0.11 -1.86 5.96 -26.63 -0.16 -2.02 16 16 C -0.13 -1.89 4.72 -26.73 -0.13 -2.01 16 17 C 0.11 1.75 0.74 -90.37 -0.07 1.68 16 18 C -0.14 -1.78 5.85 -25.30 -0.15 -1.92 16 19 C -0.12 -1.30 3.10 -88.57 -0.27 -1.57 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.11 -1.01 4.98 -26.73 -0.13 -1.14 16 22 C 0.06 0.54 5.84 37.16 0.22 0.75 16 23 O -0.39 -4.04 10.70 -35.23 -0.38 -4.42 16 24 C 0.03 0.22 11.01 101.05 1.11 1.33 16 25 C 0.05 0.55 6.56 38.22 0.25 0.80 16 26 O -0.34 -5.57 10.32 -35.23 -0.36 -5.94 16 27 C 0.08 1.49 3.95 -3.94 -0.02 1.47 16 28 H 0.05 1.07 7.75 -51.93 -0.40 0.67 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 32 H 0.03 0.76 6.22 -51.93 -0.32 0.43 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 35 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 36 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 41 H 0.08 1.02 7.69 -51.93 -0.40 0.63 16 42 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.42 7.73 -51.93 -0.40 0.02 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.04 0.92 7.28 -51.93 -0.38 0.54 16 52 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -28.81 387.85 -9.62 -38.43 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -9.82 Total: 0.81 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 0.40 Total: -14.43 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.28 Total: -36.33 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.74 Total: -10.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.81 -9.62 -38.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.340 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds