Wall clock time and date at job start Fri Apr 10 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 H 1.09006 * 109.46838 * 304.99640 * 3 2 1 5 5 C 1.50700 * 109.47385 * 184.99909 * 3 2 1 6 6 H 1.08004 * 119.99890 * 240.00367 * 5 3 2 7 7 C 1.37882 * 119.99949 * 59.99564 * 5 3 2 8 8 N 1.31509 * 119.99769 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99871 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48499 * 109.47071 * 210.00189 * 9 7 5 12 12 H 1.48499 * 109.46927 * 330.00198 * 9 7 5 13 13 N 1.46902 * 109.47216 * 64.99408 * 3 2 1 14 14 C 1.46849 * 110.99662 * 65.82614 * 13 3 2 15 15 C 1.53030 * 109.60097 * 186.06948 * 14 13 3 16 16 C 1.53171 * 109.24373 * 300.56293 * 15 14 13 17 17 C 1.52839 * 109.14548 * 57.17790 * 16 15 14 18 18 C 1.53856 * 109.68682 * 182.20542 * 17 16 15 19 19 C 1.54877 * 104.09101 * 242.48971 * 18 17 16 20 20 H 1.08993 * 110.90512 * 262.65977 * 19 18 17 21 21 C 1.52998 * 110.90724 * 139.09258 * 19 18 17 22 22 C 1.52999 * 109.47073 * 175.00094 * 21 19 18 23 23 O 1.42906 * 109.46999 * 180.02562 * 22 21 19 24 24 C 1.42892 * 113.99963 * 180.02562 * 23 22 21 25 25 C 1.55015 * 102.09586 * 20.86064 * 19 18 17 26 26 O 1.43493 * 109.85497 * 64.16792 * 17 16 15 27 27 C 1.46900 * 111.00015 * 189.99876 * 13 3 2 28 28 H 1.08994 * 109.47443 * 300.00237 * 1 2 3 29 29 H 1.09004 * 109.46873 * 60.00504 * 1 2 3 30 30 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47292 * 240.00236 * 2 1 3 32 32 H 1.08995 * 109.46985 * 119.99507 * 2 1 3 33 33 H 0.97000 * 119.99750 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.45214 * 306.11156 * 14 13 3 35 35 H 1.09007 * 109.45175 * 66.02763 * 14 13 3 36 36 H 1.08998 * 109.50948 * 60.49000 * 15 14 13 37 37 H 1.09005 * 109.51120 * 180.58507 * 15 14 13 38 38 H 1.09003 * 109.52527 * 177.08127 * 16 15 14 39 39 H 1.09004 * 109.52639 * 297.21237 * 16 15 14 40 40 H 1.08999 * 110.51026 * 1.14584 * 18 17 16 41 41 H 1.09005 * 110.50774 * 123.83722 * 18 17 16 42 42 H 1.08999 * 109.46993 * 295.00427 * 21 19 18 43 43 H 1.09006 * 109.46944 * 54.99943 * 21 19 18 44 44 H 1.08999 * 109.47482 * 300.00033 * 22 21 19 45 45 H 1.09003 * 109.46779 * 60.00564 * 22 21 19 46 46 H 1.08996 * 109.47461 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47473 * 299.99919 * 24 23 22 48 48 H 1.08998 * 109.47452 * 59.99917 * 24 23 22 49 49 H 1.08995 * 110.60982 * 81.63709 * 25 19 18 50 50 H 1.09005 * 110.60715 * 204.45671 * 25 19 18 51 51 H 1.09002 * 109.46578 * 294.71091 * 27 13 3 52 52 H 1.08998 * 109.46162 * 54.69534 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6512 2.0994 1.2552 14 6 2.3297 1.4841 2.4031 15 6 1.7908 2.0879 3.7019 16 6 2.0379 3.5995 3.6965 17 6 1.3765 4.2112 2.4619 18 6 1.6638 5.7219 2.4147 19 6 0.2638 6.3756 2.5225 20 1 -0.1177 6.6423 1.5370 21 6 0.3018 7.5993 3.4401 22 6 -1.0631 8.2905 3.4251 23 8 -1.0274 9.4338 4.2816 24 6 -2.2597 10.1548 4.3403 25 6 -0.5786 5.2369 3.1524 26 8 -0.0466 4.0431 2.5376 27 6 1.9123 3.5438 1.1963 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.8293 -0.0604 -2.9501 34 1 2.1472 0.4095 2.3993 35 1 3.4015 1.6701 2.3337 36 1 0.7208 1.8943 3.7769 37 1 2.3027 1.6377 4.5525 38 1 1.6097 4.0419 4.5961 39 1 3.1102 3.7933 3.6702 40 1 2.2894 6.0182 3.2567 41 1 2.1392 5.9910 1.4715 42 1 0.5384 7.2842 4.4563 43 1 1.0647 8.2938 3.0881 44 1 -1.2997 8.6056 2.4088 45 1 -1.8259 7.5960 3.7771 46 1 -2.1503 11.0075 5.0103 47 1 -2.5218 10.5081 3.3430 48 1 -3.0471 9.4990 4.7118 49 1 -0.4375 5.2078 4.2328 50 1 -1.6337 5.3599 2.9076 51 1 2.9861 3.7161 1.1216 52 1 1.4149 3.9675 0.3239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:15 Heat of formation + Delta-G solvation = -120.742859 kcal Electronic energy + Delta-G solvation = -27869.400440 eV Core-core repulsion = 24253.536621 eV Total energy + Delta-G solvation = -3615.863818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41062 -39.19326 -38.60513 -35.88615 -34.80220 -33.72828 -32.32379 -32.02500 -29.72046 -28.44089 -27.09807 -26.51514 -25.58464 -24.19361 -23.83886 -22.83256 -21.38595 -20.78476 -20.22131 -18.24849 -17.41660 -17.21078 -17.16392 -16.77988 -16.39203 -16.13211 -15.86455 -15.65569 -15.13963 -14.97338 -14.94141 -14.68417 -14.29965 -13.99037 -13.82247 -13.53184 -13.27960 -13.12404 -13.10366 -12.91731 -12.77100 -12.69527 -12.58815 -12.35395 -12.26146 -12.13311 -11.99955 -11.90272 -11.67406 -11.60520 -11.51250 -11.44925 -11.23826 -10.99380 -10.78997 -10.58200 -10.41436 -10.27902 -8.80960 -7.99898 -6.24648 1.36548 1.38246 1.46763 2.40076 2.75530 3.07455 3.15912 3.48542 3.58864 3.81935 3.85365 4.00911 4.17220 4.22118 4.25226 4.30603 4.35281 4.50767 4.53716 4.55645 4.57044 4.58103 4.70673 4.73832 4.74640 4.79683 4.85170 4.87699 4.88045 4.93062 4.97225 4.99450 5.01503 5.03812 5.11479 5.14465 5.19976 5.29930 5.34839 5.41188 5.43773 5.52237 5.55082 5.65475 5.81166 6.09576 6.23110 6.24001 6.25119 6.44424 6.77843 6.98660 7.46421 8.93347 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.003191 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.566153 B = 8772.973076 C = 9189.002963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.221 3.779 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.523 5.523 14 C 0.064 3.936 15 C -0.104 4.104 16 C -0.124 4.124 17 C 0.116 3.884 18 C -0.138 4.138 19 C -0.108 4.108 20 H 0.084 0.916 21 C -0.098 4.098 22 C 0.058 3.942 23 O -0.417 6.417 24 C 0.025 3.975 25 C 0.042 3.958 26 O -0.368 6.368 27 C 0.078 3.922 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.015 0.985 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.027 0.973 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 14.918 13.794 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.076 3.924 18 C -0.177 4.177 19 C -0.127 4.127 20 H 0.102 0.898 21 C -0.136 4.136 22 C -0.018 4.018 23 O -0.337 6.337 24 C -0.071 4.071 25 C -0.035 4.035 26 O -0.288 6.288 27 C -0.051 4.051 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.116 0.884 51 H 0.045 0.955 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.096 14.622 13.703 22.008 hybrid contribution 1.842 -0.105 -1.026 2.111 sum -7.254 14.517 12.678 20.594 Atomic orbital electron populations 1.21538 0.96497 0.99580 1.00460 1.21426 0.94337 0.98298 1.00182 1.19026 0.91761 0.91471 0.86399 0.98462 1.21980 0.94020 1.37625 1.05194 0.93142 1.25627 1.01780 0.94981 0.95530 1.70011 1.36259 1.39034 1.09814 0.85748 0.81476 0.78415 0.77142 1.20254 1.20946 1.19675 1.62298 1.56849 1.01898 1.03592 1.21917 0.95170 0.98409 0.90944 1.21488 1.01429 0.95330 0.95978 1.21966 1.00348 0.96129 0.97681 1.21882 0.82052 0.94278 0.94171 1.23002 0.98044 0.92877 1.03730 1.22571 0.95116 0.94951 1.00015 0.89802 1.21371 0.96730 0.95329 1.00131 1.22636 0.98188 0.87244 0.93724 1.87821 1.35859 1.42201 1.67839 1.22909 0.85711 0.96583 1.01895 1.23817 0.98814 0.83452 0.97380 1.89027 1.19123 1.39215 1.81396 1.21932 0.97067 0.89685 0.96442 0.92715 0.95159 0.93602 0.91978 0.95024 0.92977 0.92555 0.96632 0.91835 0.90592 0.89963 0.91451 0.88802 0.90888 0.90560 0.90808 0.92778 0.92315 0.88621 0.93400 0.93194 0.91348 0.88449 0.95473 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 9.80 71.98 0.71 -4.56 16 2 C -0.10 -5.16 5.17 30.59 0.16 -5.00 16 3 C 0.22 11.37 1.70 44.17 0.08 11.45 16 4 H 0.00 -0.15 8.00 -2.38 -0.02 -0.17 16 5 C -0.55 -30.04 7.23 25.60 0.18 -29.85 16 6 H 0.05 2.76 5.84 -2.91 -0.02 2.74 16 7 C 0.02 1.14 5.29 84.66 0.45 1.58 16 8 N -0.91 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.52 -22.90 3.99 -875.87 -3.49 -26.39 16 14 C 0.06 2.55 4.77 86.32 0.41 2.97 16 15 C -0.10 -3.25 5.96 30.66 0.18 -3.07 16 16 C -0.12 -3.40 4.72 30.60 0.14 -3.26 16 17 C 0.12 3.52 0.74 -10.63 -0.01 3.51 16 18 C -0.14 -3.27 5.85 31.52 0.18 -3.08 16 19 C -0.11 -2.12 3.10 -9.46 -0.03 -2.15 16 20 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.10 -1.61 4.98 30.59 0.15 -1.46 16 22 C 0.06 0.92 5.84 71.98 0.42 1.34 16 23 O -0.42 -7.66 10.70 -148.98 -1.59 -9.26 16 24 C 0.03 0.30 11.01 113.37 1.25 1.55 16 25 C 0.04 0.91 6.56 72.67 0.48 1.38 16 26 O -0.37 -11.62 10.32 -148.98 -1.54 -13.16 16 27 C 0.08 3.09 3.95 86.23 0.34 3.43 16 28 H 0.05 2.28 7.75 -2.39 -0.02 2.26 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 31 H 0.06 3.45 5.95 -2.39 -0.01 3.43 16 32 H 0.03 1.53 6.22 -2.39 -0.01 1.52 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.06 2.36 6.11 -2.39 -0.01 2.34 16 35 H 0.02 0.67 6.38 -2.38 -0.02 0.66 16 36 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 37 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.08 1.87 8.06 -2.39 -0.02 1.85 16 39 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.09 1.88 7.40 -2.39 -0.02 1.86 16 41 H 0.07 1.83 7.69 -2.38 -0.02 1.81 16 42 H 0.08 1.23 7.98 -2.39 -0.02 1.21 16 43 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.81 7.73 -2.39 -0.02 0.80 16 46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 50 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 51 H 0.03 1.16 7.28 -2.39 -0.02 1.14 16 52 H 0.05 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -63.48 387.85 1.60 -61.88 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.86 Total: 18.85 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 5.10 Total: -25.23 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -3.25 Total: -78.96 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -3.13 Total: -22.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -63.48 1.60 -61.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.859 kcal (2) G-P(sol) polarization free energy of solvation -63.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds