Wall clock time and date at job start Fri Apr 10 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47188 * 2 1 4 4 H 1.08997 * 109.47179 * 302.19403 * 3 2 1 5 5 C 1.50707 * 109.47009 * 182.20192 * 3 2 1 6 6 H 1.08005 * 119.99581 * 239.99952 * 5 3 2 7 7 C 1.37878 * 120.00187 * 59.99667 * 5 3 2 8 8 N 1.31516 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99879 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47269 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47174 * 120.00307 * 9 7 5 12 12 H 1.48499 * 109.46974 * 239.99805 * 9 7 5 13 13 N 1.46896 * 109.47456 * 62.20102 * 3 2 1 14 14 C 1.46841 * 111.00154 * 60.70623 * 13 3 2 15 15 C 1.53042 * 109.59734 * 186.07913 * 14 13 3 16 16 C 1.53169 * 109.23970 * 300.55421 * 15 14 13 17 17 C 1.52857 * 109.15651 * 57.17960 * 16 15 14 18 18 C 1.53871 * 109.71093 * 182.23865 * 17 16 15 19 19 C 1.54868 * 104.08863 * 238.60072 * 18 17 16 20 20 H 1.09004 * 110.90517 * 97.37271 * 19 18 17 21 21 C 1.52990 * 110.90650 * 220.93592 * 19 18 17 22 22 C 1.53004 * 109.47191 * 185.00143 * 21 19 18 23 23 O 1.42900 * 109.47090 * 179.97438 * 22 21 19 24 24 C 1.42899 * 113.99859 * 179.97438 * 23 22 21 25 25 C 1.55016 * 102.10008 * 339.13780 * 19 18 17 26 26 O 1.43489 * 109.85706 * 64.18703 * 17 16 15 27 27 C 1.46899 * 111.00077 * 184.88828 * 13 3 2 28 28 H 1.08995 * 109.47034 * 174.69651 * 1 2 3 29 29 H 1.09000 * 109.47105 * 294.70400 * 1 2 3 30 30 H 1.09005 * 109.46492 * 54.69693 * 1 2 3 31 31 H 1.09001 * 109.47258 * 239.99586 * 2 1 3 32 32 H 1.09008 * 109.46744 * 119.99835 * 2 1 3 33 33 H 0.96999 * 120.00144 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45077 * 66.03699 * 14 13 3 35 35 H 1.09001 * 109.44866 * 306.12197 * 14 13 3 36 36 H 1.08995 * 109.50896 * 180.62473 * 15 14 13 37 37 H 1.09002 * 109.50730 * 60.47824 * 15 14 13 38 38 H 1.09007 * 109.52227 * 297.27983 * 16 15 14 39 39 H 1.08996 * 109.58067 * 177.11944 * 16 15 14 40 40 H 1.09000 * 110.50452 * 119.95072 * 18 17 16 41 41 H 1.09003 * 110.50391 * 357.25218 * 18 17 16 42 42 H 1.08999 * 109.47618 * 65.00246 * 21 19 18 43 43 H 1.09009 * 109.47142 * 304.99982 * 21 19 18 44 44 H 1.08999 * 109.47013 * 300.00068 * 22 21 19 45 45 H 1.09004 * 109.47167 * 60.00402 * 22 21 19 46 46 H 1.08999 * 109.47625 * 300.00320 * 24 23 22 47 47 H 1.09007 * 109.46730 * 60.00505 * 24 23 22 48 48 H 1.08999 * 109.47460 * 179.97438 * 24 23 22 49 49 H 1.08999 * 110.60639 * 155.38853 * 25 19 18 50 50 H 1.08998 * 110.60703 * 278.36320 * 25 19 18 51 51 H 1.09001 * 109.46621 * 54.67797 * 27 13 3 52 52 H 1.09000 * 109.46426 * 294.70971 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6449 1.9675 -0.8696 5 6 3.5461 1.4427 -0.0546 6 1 4.1152 1.9001 0.7413 7 6 4.1975 0.8591 -1.1205 8 7 3.5044 0.3025 -2.0898 9 14 6.0642 0.8589 -1.1877 10 1 6.6029 1.5425 0.0154 11 1 6.5581 -0.5412 -1.2237 12 1 6.5156 1.5745 -2.4081 13 7 1.5943 2.1195 1.2251 14 6 2.1226 1.4480 2.4194 15 6 1.5197 2.0833 3.6744 16 6 1.8789 3.5719 3.7090 17 6 1.3750 4.2393 2.4295 18 6 1.7784 5.7242 2.4252 19 6 0.4312 6.4806 2.3183 20 1 0.0887 6.8059 3.3007 21 6 0.5468 7.6693 1.3622 22 6 -0.7605 8.4642 1.3762 23 8 -0.6522 9.5748 0.4836 24 6 -1.8264 10.3869 0.4212 25 6 -0.5072 5.3922 1.7369 26 8 -0.0578 4.1797 2.3804 27 6 1.9668 3.5403 1.2067 28 1 -0.3633 -1.0232 -0.0950 29 1 -0.3633 0.4295 0.9336 30 1 -0.3632 0.5939 -0.8388 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.9626 -0.1078 -2.8399 34 1 3.2073 1.5528 2.4448 35 1 1.8613 0.3903 2.3865 36 1 1.9212 1.5913 4.5602 37 1 0.4356 1.9709 3.6544 38 1 2.9611 3.6840 3.7763 39 1 1.4096 4.0409 4.5737 40 1 2.4100 5.9458 1.5649 41 1 2.2894 5.9837 3.3524 42 1 0.7404 7.3063 0.3528 43 1 1.3669 8.3130 1.6803 44 1 -1.5805 7.8205 1.0582 45 1 -0.9540 8.8274 2.3856 46 1 -2.6683 9.7830 0.0826 47 1 -2.0427 10.7895 1.4108 48 1 -1.6637 11.2079 -0.2770 49 1 -1.5450 5.6022 1.9960 50 1 -0.3876 5.3201 0.6560 51 1 1.5802 4.0055 0.2999 52 1 3.0529 3.6313 1.2266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:18 Heat of formation + Delta-G solvation = -121.125691 kcal Electronic energy + Delta-G solvation = -28048.089243 eV Core-core repulsion = 24432.208824 eV Total energy + Delta-G solvation = -3615.880419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40941 -39.19222 -38.60281 -35.93242 -34.80193 -33.78996 -32.35119 -31.92932 -29.67442 -28.50136 -27.10652 -26.48522 -25.67468 -24.22284 -23.84803 -22.75451 -21.41324 -20.78792 -20.24707 -18.23719 -17.43391 -17.25079 -17.10751 -16.72955 -16.40749 -16.13638 -16.04791 -15.64974 -15.31012 -14.98424 -14.88870 -14.45148 -14.16690 -13.99517 -13.90477 -13.51228 -13.34167 -13.17014 -13.14991 -13.05309 -12.76531 -12.59744 -12.56246 -12.49035 -12.19005 -12.12623 -12.09768 -11.76101 -11.68661 -11.63411 -11.56003 -11.45886 -11.20249 -10.99210 -10.85998 -10.58558 -10.42886 -10.25391 -8.82086 -8.00948 -6.25975 1.34316 1.37120 1.46697 2.38899 2.75170 3.07109 3.14594 3.53253 3.57728 3.78112 3.88649 3.97699 4.14593 4.23261 4.27689 4.30192 4.37413 4.49454 4.53550 4.54739 4.55763 4.57239 4.66434 4.72266 4.74245 4.82074 4.83905 4.86516 4.87025 4.90607 4.97018 5.00908 5.04281 5.06536 5.08947 5.15140 5.18427 5.27076 5.35436 5.39382 5.41861 5.51752 5.55505 5.64321 5.79883 6.07547 6.20373 6.23178 6.25922 6.42923 6.77224 6.97364 7.45145 8.92090 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.003672 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.400118 B = 7624.037879 C = 8190.595572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C 0.221 3.779 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.522 5.522 14 C 0.062 3.938 15 C -0.105 4.105 16 C -0.105 4.105 17 C 0.114 3.886 18 C -0.139 4.139 19 C -0.102 4.102 20 H 0.106 0.894 21 C -0.104 4.104 22 C 0.060 3.940 23 O -0.421 6.421 24 C 0.025 3.975 25 C 0.043 3.957 26 O -0.365 6.365 27 C 0.062 3.938 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.013 0.987 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.041 0.959 51 H 0.042 0.958 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 15.275 11.681 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.245 5.245 14 C -0.066 4.066 15 C -0.143 4.143 16 C -0.142 4.142 17 C 0.074 3.926 18 C -0.177 4.177 19 C -0.120 4.120 20 H 0.124 0.876 21 C -0.142 4.142 22 C -0.016 4.016 23 O -0.341 6.341 24 C -0.071 4.071 25 C -0.034 4.034 26 O -0.284 6.284 27 C -0.067 4.067 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.124 0.876 50 H 0.060 0.940 51 H 0.060 0.940 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.119 15.006 11.499 20.990 hybrid contribution 1.947 -0.203 -0.976 2.187 sum -7.172 14.803 10.523 19.527 Atomic orbital electron populations 1.21524 0.96366 0.99414 1.00608 1.21446 0.94349 0.98205 1.00310 1.19017 0.91399 0.91266 0.86929 0.98717 1.21993 0.93941 1.36730 1.06100 0.93320 1.25630 1.01993 0.94968 0.95354 1.70019 1.36348 1.38352 1.10375 0.85692 0.81456 0.77755 0.77849 1.19579 1.20562 1.20751 1.62288 1.58327 1.01237 1.02630 1.21945 0.95877 0.98162 0.90641 1.21509 1.01147 0.95398 0.96256 1.21668 1.00589 0.95774 0.96194 1.21930 0.81670 0.94598 0.94393 1.23022 0.98143 0.92638 1.03913 1.22582 0.94826 0.94291 1.00334 0.87594 1.21418 0.97711 0.95618 0.99434 1.22634 0.97921 0.87541 0.93481 1.87837 1.39121 1.41411 1.65735 1.22912 0.87141 0.94825 1.02190 1.23754 0.99568 0.83662 0.96375 1.88912 1.19426 1.40658 1.79430 1.22245 0.96722 0.90280 0.97486 0.93611 0.92734 0.95152 0.92071 0.94845 0.92984 0.96887 0.92266 0.90347 0.91783 0.91065 0.89411 0.91231 0.88324 0.92465 0.90362 0.92787 0.91583 0.93430 0.92820 0.88840 0.87630 0.94028 0.93984 0.96019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.70 71.98 0.70 -4.46 16 2 C -0.10 -5.18 4.97 30.59 0.15 -5.03 16 3 C 0.22 11.45 1.78 44.17 0.08 11.53 16 4 H -0.01 -0.30 8.09 -2.39 -0.02 -0.32 16 5 C -0.55 -30.23 7.18 25.60 0.18 -30.05 16 6 H 0.05 2.70 5.84 -2.91 -0.02 2.68 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -52.99 11.31 21.45 0.24 -52.75 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.52 -22.88 4.00 -875.90 -3.51 -26.38 16 14 C 0.06 2.47 4.79 86.33 0.41 2.88 16 15 C -0.11 -3.25 5.96 30.66 0.18 -3.07 16 16 C -0.10 -2.87 4.78 30.60 0.15 -2.72 16 17 C 0.11 3.47 0.74 -10.62 -0.01 3.46 16 18 C -0.14 -3.29 5.85 31.53 0.18 -3.10 16 19 C -0.10 -2.00 3.10 -9.47 -0.03 -2.03 16 20 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 21 C -0.10 -2.01 4.98 30.59 0.15 -1.86 16 22 C 0.06 1.04 5.84 71.98 0.42 1.46 16 23 O -0.42 -8.76 10.70 -148.98 -1.59 -10.35 16 24 C 0.03 0.35 11.01 113.37 1.25 1.59 16 25 C 0.04 1.07 6.57 72.67 0.48 1.54 16 26 O -0.37 -11.57 10.32 -148.98 -1.54 -13.11 16 27 C 0.06 2.48 3.82 86.23 0.33 2.81 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 2.23 7.83 -2.39 -0.02 2.21 16 30 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.06 3.40 6.02 -2.39 -0.01 3.38 16 32 H 0.03 1.62 6.18 -2.38 -0.01 1.60 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.01 0.56 6.64 -2.39 -0.02 0.55 16 35 H 0.06 2.45 5.97 -2.39 -0.01 2.43 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 1.79 7.40 -2.39 -0.02 1.77 16 41 H 0.10 1.90 7.69 -2.39 -0.02 1.88 16 42 H 0.06 1.32 7.98 -2.39 -0.02 1.31 16 43 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.05 0.88 7.73 -2.39 -0.02 0.86 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.04 1.18 7.90 -2.39 -0.02 1.16 16 51 H 0.04 1.81 8.05 -2.39 -0.02 1.79 16 52 H 0.02 0.94 6.94 -2.39 -0.02 0.93 16 Total: -1.00 -64.50 387.70 1.56 -62.94 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.86 Total: 18.98 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 5.08 Total: -25.47 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.26 Total: -79.14 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -3.13 Total: -23.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.50 1.56 -62.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.190 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds